Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VagC
Location 84562..85187 Replicon plasmid pATCC14028_1
Accession NZ_CP117245
Organism Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 14028

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag PQQ30_RS24205 Protein ID WP_000911322.1
Coordinates 84562..84960 (-) Length 133 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag PQQ30_RS24210 Protein ID WP_000450265.1
Coordinates 84960..85187 (-) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
PQQ30_RS24190 (PQQ30_24190) 80753..81247 + 495 WP_010999946.1 entry exclusion protein -
PQQ30_RS24195 (PQQ30_24195) 81283..82014 + 732 WP_000782438.1 conjugal transfer complement resistance protein TraT -
PQQ30_RS24200 (PQQ30_24200) 82391..84553 + 2163 WP_000009318.1 type IV conjugative transfer system coupling protein TraD -
PQQ30_RS24205 (PQQ30_24205) 84562..84960 - 399 WP_000911322.1 type II toxin-antitoxin system VapC family toxin Toxin
PQQ30_RS24210 (PQQ30_24210) 84960..85187 - 228 WP_000450265.1 toxin-antitoxin system antitoxin VapB Antitoxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Conjugative plasmid - rck / pefD / pefC / pefA / pefB / fdeC / spvC / spvB 1..93832 93832


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(5-125)

Antitoxin

SpoVT-AbrB domain

(7-51)


Sequences

Toxin        


Download         Length: 133 a.a.        Molecular weight: 14887.13 Da        Isoelectric Point: 8.5264

>T270187 WP_000911322.1 NZ_CP117245:c84960-84562 [Salmonella enterica subsp. enterica serovar Typhimurium]
MLKFMLDTNICIFTIKNKPASVRERFNLNQGRMCISSVTLMELIYGAEKSQMPERNLAVIEGFVSRLDVLDYDTPAATHT
GQIRAELARQGRPVGPFDQMIAGHARSRGLIVVTNNTREFERVGGLRTEDWS

Download         Length: 399 bp

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8509.49 Da        Isoelectric Point: 4.5358

>AT270187 WP_000450265.1 NZ_CP117245:c85187-84960 [Salmonella enterica subsp. enterica serovar Typhimurium]
METSVFLSNRSQAVRLPKAVALPENVKRVEVIAVGRTRIITPAGESWDEWFDGNNVSADFMDNREQPSVQERESF

Download         Length: 228 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References