MGE detailed information
MGE type: Prophage MGE length: 78378 bp
Accession: NZ_CP117010 Location: 1051699..1130076 Organism: Escherichia coli strain MLI110 Replicon: chromosome
Accession: NZ_CP117010 Location: 1051699..1130076 Organism: Escherichia coli strain MLI110 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL413_RS05725 (1047432) | 1047432..1048565 | - | 1134 | WP_000064739.1 | NADH:flavorubredoxin reductase NorW | - |
| NL413_RS05730 (1048562) | 1048562..1050001 | - | 1440 | WP_000029611.1 | anaerobic nitric oxide reductase flavorubredoxin | - |
| NL413_RS05735 (1050188) | 1050188..1051702 | + | 1515 | WP_000010749.1 | nitric oxide reductase transcriptional regulator NorR | - |
| NL413_RS05740 (1051699) | 1051699..1052664 | - | 966 | WP_001287420.1 | hypothetical protein | VF |
| NL413_RS05745 (1052657) | 1052657..1053430 | - | 774 | WP_000804550.1 | glucitol operon DNA-binding transcriptional repressor SrlR | - |
| NL413_RS05750 (1053497) | 1053497..1053856 | - | 360 | WP_000252908.1 | transcriptional regulator GutM | - |
| NL413_RS05755 (1053961) | 1053961..1054740 | - | 780 | WP_001077358.1 | sorbitol-6-phosphate dehydrogenase | - |
| NL413_RS05760 (1054744) | 1054744..1055115 | - | 372 | WP_000216194.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| NL413_RS05765 (1055126) | 1055126..1056085 | - | 960 | WP_000148878.1 | PTS glucitol/sorbitol transporter subunit IIB | - |
| NL413_RS05770 (1056082) | 1056082..1056645 | - | 564 | WP_000573321.1 | PTS glucitol/sorbitol transporter subunit IIC | - |
| NL413_RS05775 (1056901) | 1056901..1057986 | + | 1086 | WP_001295177.1 | lytic murein transglycosylase B | - |
| NL413_RS05780 (1058131) | 1058131..1058628 | + | 498 | WP_000132231.1 | nicotinamide-nucleotide amidase | - |
| NL413_RS05785 (1058708) | 1058708..1059769 | + | 1062 | WP_000963143.1 | recombinase RecA | - |
| NL413_RS05790 (1059838) | 1059838..1060338 | + | 501 | WP_000140508.1 | recombination regulator RecX | - |
| NL413_RS05795 (1060466) | 1060466..1063096 | + | 2631 | WP_000047184.1 | alanine--tRNA ligase | - |
| NL413_RS05800 (1063331) | 1063331..1063516 | + | 186 | WP_000906486.1 | carbon storage regulator CsrA | - |
| NL413_RS05830 (1064974) | 1064974..1065540 | + | 567 | WP_000273289.1 | fructose-1-phosphate/6-phosphogluconate phosphatase | - |
| NL413_RS05835 (1065537) | 1065537..1065965 | + | 429 | WP_001287454.1 | YqaA family protein | - |
| NL413_RS05840 (1066038) | 1066038..1067594 | + | 1557 | WP_000611804.1 | glutamate--cysteine ligase | - |
| NL413_RS05845 (1067744) | 1067744..1068259 | + | 516 | WP_001130211.1 | hypothetical protein | VF |
| NL413_RS05850 (1068323) | 1068323..1069861 | - | 1539 | WP_061350702.1 | hypothetical protein | VF |
| NL413_RS05855 (1069878) | 1069878..1071050 | - | 1173 | WP_001295175.1 | hypothetical protein | VF |
| NL413_RS05860 (1071177) | 1071177..1071707 | - | 531 | WP_000378442.1 | hypothetical protein | VF |
| NL413_RS05865 (1071798) | 1071798..1072133 | - | 336 | WP_000119766.1 | L-valine transporter subunit YgaH | - |
| NL413_RS05870 (1072123) | 1072123..1072860 | - | 738 | WP_000445658.1 | L-valine exporter subunit YgaZ | - |
| NL413_RS05875 (1072984) | 1072984..1074168 | - | 1185 | WP_000165673.1 | MFS transporter | - |
| NL413_RS05880 (1074460) | 1074460..1075452 | - | 993 | WP_001216521.1 | glycine betaine/L-proline ABC transporter substrate-binding protein ProX | - |
| NL413_RS05885 (1075510) | 1075510..1076574 | - | 1065 | WP_000774988.1 | glycine betaine/L-proline ABC transporter permease ProW | - |
| NL413_RS05890 (1076567) | 1076567..1077769 | - | 1203 | WP_000985494.1 | hypothetical protein | VF |
| NL413_RS05895 (1078123) | 1078123..1079082 | - | 960 | WP_000777969.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| NL413_RS05900 (1079092) | 1079092..1081236 | - | 2145 | WP_061350792.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| NL413_RS05905 (1081209) | 1081209..1081619 | - | 411 | WP_000080947.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| NL413_RS05910 (1081616) | 1081616..1081861 | - | 246 | WP_001223227.1 | glutaredoxin-like protein NrdH | - |
| NL413_RS05915 (1082109) | 1082109..1082438 | - | 330 | WP_001295174.1 | DUF883 domain-containing protein | - |
| NL413_RS05920 (1082590) | 1082590..1082934 | + | 345 | WP_000281320.1 | DUF2002 family protein | - |
| NL413_RS05925 (1082971) | 1082971..1083420 | - | 450 | WP_000492656.1 | L-alanine exporter AlaE | - |
| NL413_RS05930 (1084089) | 1084089..1084493 | + | 405 | WP_000115383.1 | DNA-binding protein StpA | - |
| NL413_RS05935 (1084540) | 1084540..1085064 | - | 525 | WP_001229442.1 | thiosulfate sulfurtransferase YgaP | - |
| NL413_RS05940 (1085074) | 1085074..1085373 | - | 300 | WP_000137280.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| NL413_RS05945 (1085556) | 1085556..1085714 | + | 159 | WP_000508177.1 | YqaE/Pmp3 family membrane protein | - |
| NL413_RS05950 (1085798) | 1085798..1086247 | + | 450 | WP_000522415.1 | potassium binding protein Kbp | - |
| NL413_RS05955 (1086248) | 1086248..1086910 | - | 663 | WP_000156811.1 | DNA-binding transcriptional regulator CsiR | - |
| NL413_RS05960 (1086931) | 1086931..1088331 | - | 1401 | WP_001295173.1 | GABA permease | - |
| NL413_RS05965 (1088569) | 1088569..1089849 | - | 1281 | WP_001087611.1 | hypothetical protein | VF |
| NL413_RS05970 (1089863) | 1089863..1091311 | - | 1449 | WP_000772831.1 | NADP-dependent succinate-semialdehyde dehydrogenase | - |
| NL413_RS05975 (1091334) | 1091334..1092602 | - | 1269 | WP_000271951.1 | L-2-hydroxyglutarate oxidase | - |
| NL413_RS05980 (1092622) | 1092622..1093599 | - | 978 | WP_000993126.1 | glutarate dioxygenase GlaH | - |
| NL413_RS05985 (1093935) | 1093935..1096187 | - | 2253 | Protein_1039 | alpha-amylase family glycosyl hydrolase | - |
| NL413_RS05995 (1097573) | 1097573..1098946 | + | 1374 | Protein_1040 | DUF5507 domain-containing protein | - |
| NL413_RS06000 (1099340) | 1099340..1099519 | + | 180 | WP_087676347.1 | DNA invertase | - |
| NL413_RS06005 (1099674) | 1099674..1099793 | + | 120 | WP_001120794.1 | hypothetical protein | - |
| NL413_RS06010 (1099858) | 1099858..1100727 | + | 870 | Protein_1043 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| NL413_RS06015 (1100798) | 1100798..1101778 | + | 981 | WP_000019402.1 | IS5 family transposase IS5D | Transposase |
| NL413_RS06020 (1101909) | 1101909..1105631 | + | 3723 | Protein_1045 | hypothetical protein | VF |
| NL413_RS06025 (1105991) | 1105991..1106320 | - | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | Toxin Detail |
| NL413_RS06030 (1106341) | 1106341..1106658 | - | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| NL413_RS06035 (1106696) | 1106696..1106896 | - | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
| NL413_RS06040 (1106905) | 1106905..1107387 | - | 483 | WP_001407480.1 | RadC family protein | - |
| NL413_RS06045 (1107396) | 1107396..1107854 | - | 459 | WP_000211841.1 | antirestriction protein | - |
| NL413_RS06050 (1107957) | 1107957..1108141 | - | 185 | Protein_1051 | DUF905 family protein | - |
| NL413_RS06055 (1108752) | 1108752..1110455 | - | 1704 | WP_000896263.1 | protein YfjW | - |
| NL413_RS06060 (1110597) | 1110597..1111606 | + | 1010 | Protein_1053 | arsenic transporter | - |
| NL413_RS06065 (1111619) | 1111619..1111771 | + | 153 | Protein_1054 | arsenate reductase | - |
| NL413_RS06070 (1112158) | 1112158..1112625 | - | 468 | WP_000702495.1 | protein YfjT | - |
| NL413_RS06075 (1112713) | 1112713..1113117 | + | 405 | WP_161222429.1 | IS66 family transposase ISKpn24 | Transposase |
| NL413_RS06080 (1113114) | 1113114..1113461 | + | 348 | WP_021563201.1 | IS66 family transposase ISKpn24 | Transposase |
| NL413_RS06085 (1113510) | 1113510..1115048 | + | 1539 | WP_004201219.1 | IS66 family transposase ISKpn24 | Transposase |
| NL413_RS06090 (1115111) | 1115111..1115554 | - | 444 | WP_000824222.1 | lipoprotein YfjS | - |
| NL413_RS06095 (1115554) | 1115554..1115790 | - | 237 | WP_001144029.1 | protein YpjK | - |
| NL413_RS06100 (1115831) | 1115831..1116532 | - | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| NL413_RS06105 (1116749) | 1116749..1117570 | - | 822 | WP_000197391.1 | DUF932 domain-containing protein | - |
| NL413_RS06110 (1117662) | 1117662..1118525 | - | 864 | WP_000787597.1 | GTPase family protein | - |
| NL413_RS06115 (1118880) | 1118880..1119251 | - | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin Detail |
| NL413_RS06120 (1119244) | 1119244..1120317 | - | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin Detail |
| NL413_RS06125 (1120459) | 1120459..1120722 | + | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| NL413_RS06130 (1121082) | 1121082..1122698 | + | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| NL413_RS06135 (1122695) | 1122695..1124884 | + | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| NL413_RS06140 (1125062) | 1125062..1125688 | - | 627 | WP_000220524.1 | inovirus Gp2 family protein | - |
| NL413_RS06145 (1125841) | 1125841..1127250 | - | 1410 | WP_000481742.1 | YfjI family protein | - |
| NL413_RS06150 (1127379) | 1127379..1127591 | - | 213 | WP_001065343.1 | DNA-binding transcriptional activator AlpA | - |
| NL413_RS06155 (1127635) | 1127635..1128591 | + | 957 | WP_000510827.1 | protein YfjH | - |
| NL413_RS06160 (1128835) | 1128835..1130076 | - | 1242 | WP_257812146.1 | hypothetical protein ; Integrase | Integrase |
| NL413_RS06170 (1130857) | 1130857..1131339 | - | 483 | WP_000162574.1 | SsrA-binding protein SmpB | - |
| NL413_RS06175 (1131510) | 1131510..1131947 | + | 438 | WP_001300750.1 | type II toxin-antitoxin system toxin RatA | - |
| NL413_RS06180 (1131937) | 1131937..1132227 | + | 291 | WP_001117838.1 | RnfH family protein | - |
| NL413_RS06185 (1132289) | 1132289..1132630 | - | 342 | WP_001203437.1 | outer membrane protein assembly factor BamE | - |
| NL413_RS06190 (1132779) | 1132779..1134440 | - | 1662 | WP_000880910.1 | DNA repair protein RecN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|