MGE detailed information
MGE type: Genomic_island MGE length: 9948 bp
Accession: NZ_CP116478 Location: 1151894..1161841 Organism: Pseudomonas syringae pv. actinidiae strain PSA.AH.01 Replicon: chromosome
Accession: NZ_CP116478 Location: 1151894..1161841 Organism: Pseudomonas syringae pv. actinidiae strain PSA.AH.01 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PHA47_RS05105 (PHA47_05105) | 1147327..1147809 | + | 483 | WP_003380358.1 | PAS domain-containing protein | - |
| PHA47_RS05110 (PHA47_05110) | 1147905..1149161 | + | 1257 | WP_003380359.1 | 3-phosphoshikimate 1-carboxyvinyltransferase | - |
| PHA47_RS05115 (PHA47_05115) | 1149226..1149462 | + | 237 | WP_003380360.1 | hypothetical protein | - |
| PHA47_RS05120 (PHA47_05120) | 1149538..1150200 | - | 663 | WP_003380361.1 | ChrR family anti-sigma-E factor | - |
| PHA47_RS05125 (PHA47_05125) | 1150200..1150712 | - | 513 | WP_003380362.1 | sigma-70 family RNA polymerase sigma factor | - |
| PHA47_RS05130 (PHA47_05130) | 1150948..1151136 | - | 189 | WP_003380363.1 | hypothetical protein | - |
| PHA47_RS05135 (PHA47_05135) | 1151135..1151710 | + | 576 | WP_003380364.1 | hypothetical protein | - |
| PHA47_RS05140 (PHA47_05140) | 1151894..1152298 | - | 405 | WP_003380365.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| PHA47_RS05145 (PHA47_05145) | 1152298..1152528 | - | 231 | WP_003380366.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| PHA47_RS05150 (PHA47_05150) | 1152643..1153524 | - | 882 | WP_003380368.1 | aldose 1-epimerase | - |
| PHA47_RS05155 (PHA47_05155) | 1153499..1154469 | - | 971 | Protein_1018 | DMT family transporter | - |
| PHA47_RS05160 (PHA47_05160) | 1154553..1155833 | - | 1281 | WP_003380372.1 | TRAP transporter large permease | - |
| PHA47_RS05165 (PHA47_05165) | 1155834..1156361 | - | 528 | WP_003380373.1 | TRAP transporter small permease | - |
| PHA47_RS05170 (PHA47_05170) | 1156425..1157456 | - | 1032 | WP_020312848.1 | TRAP transporter substrate-binding protein | - |
| PHA47_RS05175 (PHA47_05175) | 1157513..1158397 | - | 885 | WP_003380378.1 | 6-deoxy-6-sulfogluconolactonase | VF |
| PHA47_RS05180 (PHA47_05180) | 1158457..1159281 | - | 825 | WP_003380380.1 | NAD(P)-dependent oxidoreductase | - |
| PHA47_RS05185 (PHA47_05185) | 1159460..1160728 | - | 1269 | WP_007244158.1 | OprD family porin | - |
| PHA47_RS05190 (PHA47_05190) | 1161300..1161575 | - | 276 | WP_017683357.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| PHA47_RS05195 (PHA47_05195) | 1161575..1161841 | - | 267 | WP_003382249.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| PHA47_RS05200 (PHA47_05200) | 1162006..1163928 | - | 1923 | WP_017683359.1 | methyl-accepting chemotaxis protein | - |
| PHA47_RS05205 (PHA47_05205) | 1164287..1166167 | + | 1881 | WP_003382247.1 | methyl-accepting chemotaxis protein | - |
| PHA47_RS05210 (PHA47_05210) | 1166295..1166558 | - | 264 | WP_017683360.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|