MGE detailed information
MGE type: Conjugative plasmid MGE length: 111058 bp
Accession: NZ_CP116199 Location: 1..111058 Organism: Escherichia coli strain DETEC-C31 Replicon: plasmid pDETEC88
Accession: NZ_CP116199 Location: 1..111058 Organism: Escherichia coli strain DETEC-C31 Replicon: plasmid pDETEC88
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIB97_RS23960 (360) | 360..1262 | - | 903 | WP_001312822.1 | antimicrobial resistance protein Mig-14 | - |
| PIB97_RS23965 (1331) | 1331..2440 | - | 1110 | WP_000771475.1 | SDR family oxidoreductase | - |
| PIB97_RS23970 (2873) | 2873..3826 | - | 954 | WP_000280980.1 | Protease 7 | VF |
| PIB97_RS23975 (5327) | 5327..6868 | + | 1542 | WP_001298859.1 | IS21 family transposase ISEc12 | Transposase |
| PIB97_RS23980 (6883) | 6883..7629 | + | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| PIB97_RS23985 (7719) | 7719..7973 | - | 255 | Protein_5 | integrase core domain-containing protein | - |
| PIB97_RS23990 (8028) | 8028..9241 | + | 1214 | WP_162842477.1 | IS3 family transposase IS629 | Transposase |
| PIB97_RS23995 (9389) | 9389..9657 | - | 269 | Protein_7 | IS3 family transposase ISLad1 | Transposase |
| PIB97_RS24000 (9714) | 9714..10411 | + | 698 | WP_095033700.1 | IS1-like element IS1B family transposase | - |
| PIB97_RS24005 (10428) | 10428..10625 | - | 198 | Protein_9 | colicin V | - |
| PIB97_RS24010 (10603) | 10603..10839 | - | 237 | WP_014640552.1 | colicin V immunity protein | - |
| PIB97_RS24015 (11381) | 11381..11584 | - | 204 | Protein_11 | hypothetical protein | - |
| PIB97_RS24020 (11757) | 11757..11924 | + | 168 | Protein_12 | colicin-B | - |
| PIB97_RS24025 (11942) | 11942..12469 | - | 528 | WP_000203272.1 | colicin B immunity protein | - |
| PIB97_RS24030 (12713) | 12713..13528 | + | 816 | WP_001312845.1 | lipid II-degrading bacteriocin colicin M | - |
| PIB97_RS24035 (13578) | 13578..13931 | - | 354 | WP_000864812.1 | colicin M immunity protein | - |
| PIB97_RS24040 (14109) | 14109..14900 | - | 792 | WP_000016493.1 | site-specific integrase | - |
| PIB97_RS24045 (14897) | 14897..15586 | - | 690 | WP_000796228.1 | hypothetical protein | - |
| PIB97_RS24050 (15630) | 15630..15980 | - | 351 | WP_000493379.1 | hypothetical protein | - |
| PIB97_RS24055 (16525) | 16525..17613 | + | 1089 | WP_000952217.1 | transcriptional repressor PifC | - |
| PIB97_RS24060 (17615) | 17615..19840 | + | 2226 | WP_000698737.1 | P-loop NTPase fold protein | - |
| PIB97_RS24065 (19890) | 19890..20789 | - | 900 | WP_000963206.1 | nucleotide-binding protein | - |
| PIB97_RS24070 (20779) | 20779..21069 | - | 291 | WP_000111771.1 | hypothetical protein | - |
| PIB97_RS24075 (21365) | 21365..21595 | + | 231 | WP_001261287.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| PIB97_RS24080 (21592) | 21592..22008 | + | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PIB97_RS24085 (22170) | 22170..24308 | - | 2139 | WP_000350638.1 | AAA family ATPase | - |
| PIB97_RS24090 (24662) | 24662..24919 | + | 258 | WP_000343085.1 | hypothetical protein | - |
| PIB97_RS24095 (24919) | 24919..25509 | + | 591 | WP_000194575.1 | hypothetical protein | - |
| PIB97_RS24100 (25772) | 25772..27232 | + | 1461 | WP_202745975.1 | AAA family ATPase | - |
| PIB97_RS24105 (27520) | 27520..28137 | + | 618 | WP_000521603.1 | ProQ/FINO family protein | - |
| PIB97_RS24110 (28430) | 28430..29509 | - | 1080 | WP_001089727.1 | permease | - |
| PIB97_RS24115 (29614) | 29614..29937 | + | 324 | WP_001175594.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| PIB97_RS24120 (30098) | 30098..30418 | + | 321 | Protein_32 | NAD(P)H-dependent oxidoreductase | - |
| PIB97_RS24125 (30471) | 30471..31175 | - | 705 | WP_001067834.1 | IS6 family transposase IS26 | Transposase |
| PIB97_RS24130 (31241) | 31241..31525 | + | 285 | Protein_34 | IS6 family transposase IS26 | Transposase |
| PIB97_RS24135 (31715) | 31715..32530 | - | 816 | WP_000018329.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| PIB97_RS24140 (32681) | 32681..33385 | + | 705 | WP_001067834.1 | IS6 family transposase IS26 | Transposase |
| PIB97_RS24145 (33640) | 33640..34515 | + | 876 | WP_015387340.1 | Beta-lactamase CTX-M-1 | ARG |
| PIB97_RS24150 (34562) | 34562..34855 | - | 294 | WP_116961751.1 | WbuC family cupin fold metalloprotein | - |
| PIB97_RS24155 (34920) | 34920..37139 | + | 2220 | Protein_39 | Tn3 family transposase TnpA_Tn3 | Transposase |
| PIB97_RS24160 (37216) | 37216..37920 | + | 705 | WP_001067834.1 | IS6 family transposase IS26 | Transposase |
| PIB97_RS24165 (37986) | 37986..38531 | + | 546 | Protein_41 | Tn3 family transposase TnpA_Tn3 | Transposase |
| PIB97_RS24170 (38567) | 38567..38982 | - | 416 | Protein_42 | IS1-like element IS1B family transposase | - |
| PIB97_RS24175 (39231) | 39231..39632 | - | 402 | WP_001398199.1 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| PIB97_RS24180 (39565) | 39565..39822 | - | 258 | WP_000557619.1 | type II toxin-antitoxin system antitoxin PemI | - |
| PIB97_RS24185 (39915) | 39915..40568 | - | 654 | WP_000616807.1 | CPBP family intramembrane metalloprotease | - |
| PIB97_RS24190 (40666) | 40666..40806 | - | 141 | WP_001333237.1 | hypothetical protein | - |
| PIB97_RS24195 (41507) | 41507..42364 | - | 858 | WP_000774297.1 | incFII family plasmid replication initiator RepA | - |
| PIB97_RS24200 (42357) | 42357..42839 | - | 483 | WP_001273588.1 | hypothetical protein | - |
| PIB97_RS24205 (42832) | 42832..42879 | - | 48 | WP_229471593.1 | hypothetical protein | - |
| PIB97_RS24210 (42870) | 42870..43121 | + | 252 | WP_223195197.1 | replication protein RepA | - |
| PIB97_RS24215 (43138) | 43138..43395 | - | 258 | WP_000083845.1 | replication regulatory protein RepA | - |
| PIB97_RS24220 (43679) | 43679..43828 | - | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| - (43872) | 43872..43933 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (43872) | 43872..43933 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (43872) | 43872..43933 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (43872) | 43872..43933 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| PIB97_RS24225 (44189) | 44189..44263 | - | 75 | Protein_53 | endonuclease | - |
| PIB97_RS24230 (44509) | 44509..44721 | - | 213 | WP_001299730.1 | ANR family transcriptional regulator | - |
| PIB97_RS24235 (44857) | 44857..45417 | - | 561 | WP_000139315.1 | fertility inhibition protein FinO | - |
| PIB97_RS24240 (45520) | 45520..46380 | - | 861 | WP_000704513.1 | Quorum-quenching protein AidA | VF |
| PIB97_RS24245 (46439) | 46439..47185 | - | 747 | WP_000205749.1 | conjugal transfer pilus acetylase TraX | - |
| PIB97_RS24250 (47205) | 47205..52475 | - | 5271 | WP_000986962.1 | Multifunctional conjugation protein TraI | Relaxase |
| PIB97_RS24255 (52557) | 52557..52784 | + | 228 | WP_000450520.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| PIB97_RS24260 (52784) | 52784..53182 | + | 399 | WP_000911313.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PIB97_RS24265 (53191) | 53191..55344 | - | 2154 | WP_000009324.1 | type IV conjugative transfer system coupling protein TraD | - |
| PIB97_RS24270 (55597) | 55597..56328 | - | 732 | WP_023565183.1 | conjugal transfer complement resistance protein TraT | - |
| PIB97_RS24275 (56360) | 56360..56857 | - | 498 | WP_000605857.1 | entry exclusion protein | - |
| PIB97_RS24280 (56873) | 56873..59695 | - | 2823 | WP_001007018.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| PIB97_RS24285 (59692) | 59692..61065 | - | 1374 | WP_001517790.1 | conjugal transfer pilus assembly protein TraH | - |
| PIB97_RS24290 (61065) | 61065..61445 | - | 381 | WP_001389370.1 | F-type conjugal transfer protein TrbF | - |
| PIB97_RS24295 (61432) | 61432..61773 | - | 342 | WP_001443031.1 | P-type conjugative transfer protein TrbJ | - |
| PIB97_RS24300 (61703) | 61703..62248 | - | 546 | WP_000059851.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| PIB97_RS24305 (62235) | 62235..62519 | - | 285 | WP_000624109.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| PIB97_RS24310 (62600) | 62600..62914 | + | 315 | WP_001324103.1 | hypothetical protein | - |
| PIB97_RS24315 (62916) | 62916..63263 | - | 348 | WP_001287910.1 | conjugal transfer protein TrbA | - |
| PIB97_RS24320 (63279) | 63279..64022 | - | 744 | WP_001030393.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| PIB97_RS24325 (64015) | 64015..64272 | - | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| PIB97_RS24330 (64299) | 64299..66107 | - | 1809 | WP_000821841.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| PIB97_RS24335 (66104) | 66104..66742 | - | 639 | WP_000777700.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| PIB97_RS24340 (66751) | 66751..67743 | - | 993 | WP_000830183.1 | conjugal transfer pilus assembly protein TraU | - |
| PIB97_RS24345 (67740) | 67740..68372 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| PIB97_RS24350 (68369) | 68369..68755 | - | 387 | WP_000099686.1 | type-F conjugative transfer system protein TrbI | - |
| PIB97_RS24355 (68752) | 68752..71379 | - | 2628 | WP_001064245.1 | type IV secretion system protein TraC | - |
| PIB97_RS24360 (71539) | 71539..71760 | - | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| PIB97_RS24365 (71895) | 71895..72410 | - | 516 | WP_000809838.1 | type IV conjugative transfer system lipoprotein TraV | - |
| PIB97_RS24370 (72407) | 72407..72658 | - | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| PIB97_RS24375 (72670) | 72670..72867 | - | 198 | WP_001324648.1 | conjugal transfer protein TrbD | - |
| PIB97_RS24380 (72854) | 72854..73444 | - | 591 | WP_001376242.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| PIB97_RS24385 (73434) | 73434..74861 | - | 1428 | WP_000146685.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| PIB97_RS24390 (74861) | 74861..75589 | - | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| PIB97_RS24395 (75576) | 75576..76079 | - | 504 | Protein_87 | type IV conjugative transfer system protein TraE | - |
| PIB97_RS24405 (77410) | 77410..77478 | - | 69 | Protein_89 | type IV conjugative transfer system protein TraE | - |
| PIB97_RS24410 (77500) | 77500..77811 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| PIB97_RS24415 (77826) | 77826..78191 | - | 366 | WP_000994779.1 | type IV conjugative transfer system pilin TraA | - |
| PIB97_RS24420 (78224) | 78224..78625 | - | 402 | WP_001369361.1 | conjugal transfer relaxosome DNA-bindin protein TraY | - |
| PIB97_RS24425 (78718) | 78718..79407 | - | 690 | WP_000283385.1 | conjugal transfer transcriptional regulator TraJ | - |
| PIB97_RS24430 (79594) | 79594..79977 | - | 384 | WP_001151524.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| PIB97_RS24435 (80298) | 80298..80900 | + | 603 | WP_000243712.1 | hypothetical protein | VF |
| PIB97_RS24440 (81197) | 81197..82018 | - | 822 | WP_001234426.1 | DUF932 domain-containing protein | - |
| PIB97_RS24445 (82136) | 82136..82423 | - | 288 | WP_000107535.1 | hypothetical protein | - |
| PIB97_RS24450 (82448) | 82448..82654 | - | 207 | WP_000547968.1 | hypothetical protein | - |
| PIB97_RS24455 (82724) | 82724..82896 | + | 173 | Protein_99 | hypothetical protein | - |
| PIB97_RS24460 (82894) | 82894..83124 | - | 231 | WP_071586998.1 | hypothetical protein | - |
| PIB97_RS24465 (83344) | 83344..83469 | - | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| PIB97_RS24470 (83411) | 83411..83560 | - | 150 | Protein_102 | plasmid maintenance protein Mok | - |
| - (83546) | 83546..83770 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (83546) | 83546..83770 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (83546) | 83546..83770 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (83546) | 83546..83770 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| PIB97_RS24475 (83582) | 83582..83770 | + | 189 | WP_001299721.1 | hypothetical protein | - |
| PIB97_RS24480 (83739) | 83739..84501 | - | 763 | Protein_104 | plasmid SOS inhibition protein A | - |
| PIB97_RS24485 (84498) | 84498..84932 | - | 435 | WP_000845936.1 | conjugation system SOS inhibitor PsiB | - |
| PIB97_RS24490 (84987) | 84987..85184 | - | 198 | Protein_106 | hypothetical protein | - |
| PIB97_RS24495 (85212) | 85212..85445 | - | 234 | WP_000005987.1 | DUF905 family protein | - |
| PIB97_RS24500 (85513) | 85513..86052 | - | 540 | WP_000290840.1 | single-stranded DNA-binding protein | - |
| PIB97_RS24505 (86078) | 86078..86284 | - | 207 | WP_000275856.1 | hypothetical protein | - |
| PIB97_RS24510 (86354) | 86354..86434 | + | 81 | Protein_110 | hypothetical protein | - |
| PIB97_RS24515 (86617) | 86617..86786 | - | 170 | Protein_111 | hypothetical protein | - |
| PIB97_RS24520 (87380) | 87380..88351 | - | 972 | WP_000817028.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| PIB97_RS24525 (88351) | 88351..89517 | - | 1167 | WP_001238646.1 | hypothetical protein | VF |
| PIB97_RS24535 (90999) | 90999..93200 | - | 2202 | WP_000973520.1 | Ferric aerobactin receptor | VF |
| PIB97_RS24540 (93226) | 93226..94559 | - | 1334 | Protein_116 | L-lysine N6-monooxygenase | VF |
| PIB97_RS24545 (94556) | 94556..96298 | - | 1743 | WP_001015721.1 | Aerobactin synthase | VF |
| PIB97_RS24550 (96298) | 96298..97245 | - | 948 | WP_000011910.1 | N(6)-hydroxylysine O-acetyltransferase | VF |
| PIB97_RS24555 (97246) | 97246..98970 | - | 1725 | WP_000602863.1 | N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase | VF |
| PIB97_RS24560 (99106) | 99106..100299 | + | 1194 | WP_000095526.1 | MFS transporter | - |
| PIB97_RS24565 (100679) | 100679..101059 | - | 381 | WP_001318207.1 | fluoride efflux transporter CrcB | - |
| PIB97_RS24570 (101400) | 101400..101813 | - | 414 | Protein_122 | phosphopyruvate hydratase | - |
| PIB97_RS24575 (101811) | 101811..102068 | + | 258 | Protein_123 | Tn3 family transposase | - |
| PIB97_RS24580 (102302) | 102302..103159 | - | 858 | WP_000968139.1 | Manganese transport system membrane protein MntB | ARG |
| PIB97_RS24585 (103156) | 103156..104013 | - | 858 | WP_001101723.1 | Manganese transport system membrane protein MntB | ARG |
| PIB97_RS24590 (104010) | 104010..104837 | - | 828 | WP_000983710.1 | Manganese transport system ATP-binding protein MntB | VF |
| PIB97_RS24595 (104837) | 104837..105751 | - | 915 | WP_000949004.1 | putative periplasmic iron-binding protein | VF |
| PIB97_RS24600 (106107) | 106107..106804 | + | 698 | WP_094096600.1 | IS1 family transposase IS1S | Transposase |
| PIB97_RS24605 (106984) | 106984..107497 | - | 514 | Protein_129 | DUF4113 domain-containing protein | - |
| PIB97_RS24610 (107558) | 107558..107662 | - | 105 | Protein_130 | AAA family ATPase | - |
| PIB97_RS24615 (107664) | 107664..107987 | - | 324 | Protein_131 | IS21 family transposase IS21 | Transposase |
| PIB97_RS24620 (108733) | 108733..109710 | + | 978 | WP_000361611.1 | RepB family plasmid replication initiator protein | - |
| PIB97_RS24625 (109995) | 109995..110735 | - | 741 | WP_001066954.1 | tyrosine-type recombinase/integrase | - |
| PIB97_RS24630 (110856) | 110856..111044 | - | 189 | WP_001312821.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|