MGE detailed information
MGE type: Conjugative plasmid MGE length: 103383 bp
Accession: NZ_CP116183 Location: 1..103383 Organism: Escherichia coli strain DETEC-E480 Replicon: plasmid pDETEC56
Accession: NZ_CP116183 Location: 1..103383 Organism: Escherichia coli strain DETEC-E480 Replicon: plasmid pDETEC56
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIB86_RS24975 () | 101..349 | + | 249 | WP_000083837.1 | replication regulatory protein RepA | - |
| PIB86_RS24980 () | 594..668 | + | 75 | WP_001375168.1 | RepA leader peptide Tap | - |
| PIB86_RS24985 () | 661..1518 | + | 858 | WP_032495102.1 | incFII family plasmid replication initiator RepA | - |
| PIB86_RS24990 () | 2457..2918 | + | 462 | WP_072643484.1 | histidine phosphatase family protein | - |
| PIB86_RS24995 () | 3074..4273 | - | 1200 | WP_000948429.1 | IS91 family transposase ISSbo1 | Transposase |
| PIB86_RS25000 () | 4283..4471 | - | 189 | WP_000957857.1 | hypothetical protein | - |
| PIB86_RS25005 () | 4600..6222 | + | 1623 | WP_271287831.1 | P-loop NTPase fold protein | - |
| PIB86_RS25010 () | 6272..7171 | - | 900 | WP_000963206.1 | nucleotide-binding protein | - |
| PIB86_RS25015 () | 7161..7451 | - | 291 | WP_000111771.1 | hypothetical protein | - |
| PIB86_RS25020 () | 7747..7977 | + | 231 | WP_001261287.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| PIB86_RS25025 () | 7974..8390 | + | 417 | WP_001044768.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PIB86_RS25030 () | 8552..10690 | - | 2139 | WP_000350638.1 | AAA family ATPase | - |
| PIB86_RS25035 () | 11044..11301 | + | 258 | WP_000343085.1 | hypothetical protein | - |
| PIB86_RS25040 () | 11301..11891 | + | 591 | WP_000194575.1 | hypothetical protein | - |
| PIB86_RS25045 () | 12154..13710 | + | 1557 | WP_000818556.1 | AAA family ATPase | - |
| PIB86_RS25050 () | 13902..14519 | + | 618 | WP_000521603.1 | ProQ/FINO family protein | - |
| PIB86_RS25055 () | 14812..15849 | - | 1038 | WP_044502555.1 | permease | - |
| PIB86_RS25060 () | 15954..16277 | + | 324 | WP_001175594.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| PIB86_RS25065 () | 16476..17179 | + | 704 | Protein_18 | IS6 family transposase IS15DI | Transposase |
| PIB86_RS25070 () | 17185..17913 | + | 729 | WP_152921961.1 | replication initiation protein | - |
| PIB86_RS25075 () | 18451..19155 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PIB86_RS25080 () | 19541..19957 | + | 417 | WP_014839980.1 | Glutathione transferase FosA | ARG |
| PIB86_RS25085 () | 19962..20480 | - | 519 | WP_014839979.1 | FidL-like protein | - |
| PIB86_RS25090 () | 20480..21268 | - | 789 | WP_271287832.1 | winged helix-turn-helix domain-containing protein | - |
| PIB86_RS25095 () | 21288..21713 | - | 426 | Protein_24 | TetR/AcrR family transcriptional regulator | - |
| PIB86_RS25100 () | 21768..22472 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PIB86_RS25105 () | 22744..23424 | + | 681 | Protein_26 | IS91 family transposase ISAzo26 | Transposase |
| PIB86_RS25110 () | 23489..24193 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PIB86_RS25115 () | 24245..26011 | + | 1767 | Protein_28 | Tn3 family transposase TnpA_ISPa38 | Transposase |
| PIB86_RS25120 () | 26090..27094 | + | 1005 | WP_000427619.1 | IS110 family transposase IS5075 | Transposase |
| PIB86_RS25125 () | 27366..27452 | - | 87 | Protein_30 | Arm DNA-binding domain-containing protein | - |
| PIB86_RS25130 () | 27782..28597 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| PIB86_RS25135 () | 28658..29461 | + | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| PIB86_RS25140 () | 29461..30297 | + | 837 | WP_000480968.1 | hypothetical protein | ARG |
| PIB86_RS25145 () | 30603..30845 | + | 243 | WP_000844627.1 | transposase | - |
| PIB86_RS25150 () | 30877..31527 | - | 651 | WP_001493764.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| PIB86_RS25155 () | 31633..32832 | + | 1200 | WP_271287833.1 | Tetracycline resistance protein, class C | ARG |
| PIB86_RS25160 () | 32799..32987 | - | 189 | Protein_37 | IS91 family transposase | - |
| PIB86_RS25165 () | 33099..33404 | - | 306 | WP_001255015.1 | HTH-type transcriptional regulator HdfR | VF |
| PIB86_RS25170 () | 33432..34646 | - | 1215 | WP_271287834.1 | Bicyclomycin resistance protein | ARG |
| PIB86_RS25175 () | 34863..35747 | - | 885 | WP_021598067.1 | DUF3363 domain-containing protein | - |
| PIB86_RS25180 () | 35778..37271 | - | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| PIB86_RS25185 () | 37482..37706 | - | 225 | WP_000743213.1 | hypothetical protein | - |
| PIB86_RS25190 () | 37703..38440 | - | 738 | WP_001446887.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| PIB86_RS25195 () | 38926..39066 | - | 141 | WP_001044210.1 | hypothetical protein | - |
| PIB86_RS25200 () | 39072..39776 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PIB86_RS25205 () | 39902..40657 | - | 756 | WP_012372818.1 | 16S rRNA (guanine(1405)-N(7))-methyltransferase | ARG |
| PIB86_RS25210 () | 40827..41687 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| PIB86_RS25215 () | 41870..42427 | - | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| PIB86_RS25220 () | 42732..42842 | - | 111 | Protein_49 | IS6 family transposase | - |
| PIB86_RS25225 () | 42908..43612 | + | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PIB86_RS25230 () | 43664..44389 | + | 726 | Protein_51 | Beta-lactamase TEM | ARG |
| PIB86_RS25235 () | 44648..45124 | + | 477 | WP_013023839.1 | WbuC family cupin fold metalloprotein | - |
| PIB86_RS25240 () | 45171..46046 | - | 876 | WP_015387340.1 | Beta-lactamase CTX-M-1 | ARG |
| PIB86_RS25245 () | 46468..47172 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| PIB86_RS25250 () | 47238..47303 | + | 66 | Protein_55 | IS1 family transposase | - |
| PIB86_RS25255 () | 48752..48986 | + | 235 | Protein_56 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| PIB86_RS25260 () | 49114..49317 | + | 204 | Protein_57 | hypothetical protein | - |
| PIB86_RS25265 () | 49518..49868 | - | 351 | WP_000361389.1 | plasmid partitioning/stability family protein | - |
| PIB86_RS25270 () | 49871..50833 | - | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| PIB86_RS25275 () | 50980..51273 | + | 294 | WP_032146011.1 | hypothetical protein | - |
| PIB86_RS25280 () | 51350..52033 | + | 684 | WP_000085883.1 | DNA methylase | - |
| PIB86_RS25285 () | 52034..52255 | + | 222 | WP_001104881.1 | hypothetical protein | - |
| PIB86_RS25290 () | 52269..52703 | + | 435 | WP_000274503.1 | DUF1380 family protein | - |
| PIB86_RS25295 () | 52754..53530 | + | 777 | WP_001383963.1 | hypothetical protein | - |
| PIB86_RS25300 () | 53948..54373 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| PIB86_RS25305 () | 54420..54842 | + | 423 | WP_000271762.1 | DUF1380 family protein | - |
| PIB86_RS25310 () | 54839..55030 | + | 192 | WP_001027493.1 | hypothetical protein | - |
| PIB86_RS25315 () | 56068..56298 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| PIB86_RS25320 () | 56350..57711 | + | 1362 | WP_000170695.1 | DUF3560 domain-containing protein | - |
| PIB86_RS25325 () | 57758..58321 | + | 564 | WP_015059007.1 | class I SAM-dependent methyltransferase | - |
| PIB86_RS25330 () | 58407..58868 | - | 462 | Protein_71 | hypothetical protein | - |
| PIB86_RS25335 () | 59170..59697 | + | 528 | WP_000290834.1 | single-stranded DNA-binding protein | - |
| PIB86_RS25340 () | 59755..59988 | + | 234 | WP_000006003.1 | DUF905 family protein | - |
| PIB86_RS25345 () | 60049..62072 | + | 2024 | Protein_74 | ParB/RepB/Spo0J family partition protein | - |
| PIB86_RS25350 () | 62141..62575 | + | 435 | WP_000845953.1 | conjugation system SOS inhibitor PsiB | - |
| PIB86_RS25355 () | 62572..63334 | + | 763 | Protein_76 | plasmid SOS inhibition protein A | - |
| - () | 63303..63527 | + | 225 | NuclAT_0 | - | - |
| - () | 63303..63527 | + | 225 | NuclAT_0 | - | - |
| - () | 63303..63527 | + | 225 | NuclAT_0 | - | - |
| - () | 63303..63527 | + | 225 | NuclAT_0 | - | - |
| PIB86_RS25360 () | 63312..63491 | - | 180 | WP_001309233.1 | hypothetical protein | - |
| - | 63460..63525 | - | 66 | - | - | Antitoxin Detail |
| PIB86_RS25365 () | 63513..63662 | + | 150 | Protein_78 | plasmid maintenance protein Mok | - |
| PIB86_RS25370 () | 63604..63729 | + | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| PIB86_RS25375 () | 64048..64344 | - | 297 | Protein_80 | hypothetical protein | - |
| PIB86_RS25380 () | 64644..64940 | + | 297 | WP_001272251.1 | hypothetical protein | - |
| PIB86_RS25385 () | 65051..65872 | + | 822 | WP_001234445.1 | DUF932 domain-containing protein | - |
| PIB86_RS25390 () | 66169..66816 | - | 648 | WP_015059008.1 | hypothetical protein | VF |
| PIB86_RS25395 () | 67093..67476 | + | 384 | WP_000124981.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| PIB86_RS25400 () | 67667..68353 | + | 687 | WP_015059009.1 | PAS domain-containing protein | - |
| PIB86_RS25405 () | 68447..68674 | + | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| PIB86_RS25410 () | 68708..69073 | + | 366 | WP_021519752.1 | type IV conjugative transfer system pilin TraA | - |
| PIB86_RS25415 () | 69088..69399 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| PIB86_RS25420 () | 69421..69987 | + | 567 | WP_000399794.1 | type IV conjugative transfer system protein TraE | - |
| PIB86_RS25425 () | 69974..70702 | + | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| PIB86_RS25430 () | 70702..72129 | + | 1428 | WP_032297072.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| PIB86_RS25435 () | 72119..72709 | + | 591 | WP_000002778.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| PIB86_RS25440 () | 72696..72893 | + | 198 | WP_001324648.1 | conjugal transfer protein TrbD | - |
| PIB86_RS25445 () | 72905..73156 | + | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| PIB86_RS25450 () | 73153..73668 | + | 516 | WP_000809902.1 | type IV conjugative transfer system lipoprotein TraV | - |
| PIB86_RS25455 () | 73803..74024 | + | 222 | WP_001278692.1 | conjugal transfer protein TraR | - |
| PIB86_RS25460 () | 74184..76811 | + | 2628 | WP_015059012.1 | type IV secretion system protein TraC | - |
| PIB86_RS25465 () | 76808..77194 | + | 387 | WP_015059013.1 | type-F conjugative transfer system protein TrbI | - |
| PIB86_RS25470 () | 77191..77823 | + | 633 | WP_001203735.1 | type-F conjugative transfer system protein TraW | - |
| PIB86_RS25475 () | 77820..78812 | + | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| PIB86_RS25480 () | 78839..79147 | + | 309 | WP_000412447.1 | hypothetical protein | - |
| PIB86_RS25485 () | 79210..79731 | + | 522 | WP_015059014.1 | hypothetical protein | - |
| PIB86_RS25490 () | 79758..80396 | + | 639 | WP_000087532.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| PIB86_RS25495 () | 80393..80764 | + | 372 | WP_000056336.1 | hypothetical protein | - |
| PIB86_RS25500 () | 80790..81212 | + | 423 | WP_001229309.1 | HNH endonuclease signature motif containing protein | - |
| PIB86_RS25505 () | 81209..83059 | + | 1851 | WP_015059015.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| PIB86_RS25510 () | 83086..83343 | + | 258 | WP_053913405.1 | conjugal transfer protein TrbE | - |
| PIB86_RS25515 () | 83336..84079 | + | 744 | WP_015059017.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| PIB86_RS25520 () | 84240..84476 | + | 237 | WP_000270010.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| PIB86_RS25525 () | 84463..85008 | + | 546 | WP_000059817.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| PIB86_RS25530 () | 84998..85312 | + | 315 | WP_001384255.1 | P-type conjugative transfer protein TrbJ | - |
| PIB86_RS25535 () | 85266..85658 | + | 393 | WP_000126338.1 | F-type conjugal transfer protein TrbF | - |
| PIB86_RS25540 () | 85645..87018 | + | 1374 | WP_000944325.1 | conjugal transfer pilus assembly protein TraH | - |
| PIB86_RS25545 () | 87015..89831 | + | 2817 | WP_271287830.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| PIB86_RS25550 () | 89864..90385 | + | 522 | WP_000632668.1 | conjugal transfer entry exclusion protein TraS | - |
| PIB86_RS25555 () | 90410..91141 | + | 732 | WP_021559024.1 | conjugal transfer complement resistance protein TraT | - |
| PIB86_RS25560 () | 91344..92081 | + | 738 | WP_015059020.1 | hypothetical protein | - |
| PIB86_RS25565 () | 92132..94384 | + | 2253 | WP_061093448.1 | type IV conjugative transfer system coupling protein TraD | - |
| PIB86_RS25570 () | 94384..99654 | + | 5271 | WP_061093447.1 | Multifunctional conjugation protein TraI | Relaxase |
| PIB86_RS25575 () | 99674..100420 | + | 747 | WP_000205770.1 | conjugal transfer pilus acetylase TraX | - |
| PIB86_RS25580 () | 100475..101035 | + | 561 | WP_000139328.1 | fertility inhibition protein FinO | - |
| PIB86_RS25585 () | 101167..101367 | + | 201 | WP_015059022.1 | hypothetical protein | - |
| PIB86_RS25590 () | 101753..102352 | + | 600 | WP_032083981.1 | PIN domain-containing protein | - |
| PIB86_RS25595 () | 102414..102746 | + | 333 | WP_152916585.1 | hypothetical protein | - |
| - () | 102947..103006 | - | 60 | NuclAT_1 | - | - |
| - () | 102947..103006 | - | 60 | NuclAT_1 | - | - |
| - () | 102947..103006 | - | 60 | NuclAT_1 | - | - |
| - () | 102947..103006 | - | 60 | NuclAT_1 | - | - |
| PIB86_RS25600 () | 103051..103200 | + | 150 | WP_001312851.1 | Hok/Gef family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|