MGE detailed information
MGE type: Genomic_island MGE length: 9352 bp
Accession: NZ_CP116106 Location: 4360525..4369876 Organism: Escherichia coli strain DETEC-P829 Replicon: chromosome
Accession: NZ_CP116106 Location: 4360525..4369876 Organism: Escherichia coli strain DETEC-P829 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIC05_RS21160 (4355686) | 4355686..4356987 | + | 1302 | WP_000961959.1 | anaerobic C4-dicarboxylate transporter DcuA | - |
| PIC05_RS21165 (4357103) | 4357103..4357441 | + | 339 | WP_000883400.1 | divalent cation tolerance protein CutA | - |
| PIC05_RS21170 (4357417) | 4357417..4359114 | + | 1698 | WP_000068932.1 | protein-disulfide reductase DsbD | - |
| PIC05_RS21175 (4359151) | 4359151..4359726 | + | 576 | WP_001188520.1 | transcriptional regulator | - |
| PIC05_RS21185 (4360525) | 4360525..4362063 | + | 1539 | WP_001187183.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| PIC05_RS21190 (4362429) | 4362429..4363763 | + | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
| PIC05_RS21195 (4363843) | 4363843..4365990 | + | 2148 | WP_001295383.1 | lysine decarboxylase CadA | - |
| PIC05_RS21200 (4366049) | 4366049..4367506 | + | 1458 | WP_000856832.1 | dipeptide/tripeptide permease DtpC | - |
| PIC05_RS21205 (4367743) | 4367743..4369260 | + | 1518 | WP_001295087.1 | lysine--tRNA ligase | - |
| PIC05_RS21210 (4369379) | 4369379..4369552 | - | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | Toxin Detail |
| PIC05_RS21215 (4369580) | 4369580..4369876 | - | 297 | WP_000398619.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin Detail |
| PIC05_RS21220 (4370103) | 4370103..4370375 | - | 273 | WP_000405647.1 | GNAT family N-acetyltransferase | - |
| PIC05_RS21225 (4370387) | 4370387..4370617 | - | 231 | WP_000371698.1 | 4Fe-4S mono-cluster protein YjdI | - |
| PIC05_RS21230 (4370798) | 4370798..4372429 | + | 1632 | WP_001216487.1 | sensor histidine kinase | - |
| PIC05_RS21235 (4372426) | 4372426..4373145 | + | 720 | WP_271292831.1 | two-component system response regulator DcuR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20087 | HG738867 | 4238430..4247780 | 0.007 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21458 | NC_007779 | 4357262..4366612 | 0.007 | |
| Escherichia coli BW2952 | Genomic island | TA23874 | NC_012759 | 4289342..4298692 | 0.007 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285032 | NZ_HG738867 | 4238430..4247780 | 0.007 |