MGE detailed information
MGE type: Conjugative plasmid MGE length: 87625 bp
Accession: NZ_CP116076 Location: 1..87625 Organism: Escherichia coli strain DETEC-S586 Replicon: plasmid pDETEC47
Accession: NZ_CP116076 Location: 1..87625 Organism: Escherichia coli strain DETEC-S586 Replicon: plasmid pDETEC47
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIC49_RS24560 (455) | 455..1486 | + | 1032 | WP_048257187.1 | plasmid replication initiator RepA | - |
| PIC49_RS24565 (2184) | 2184..2342 | + | 159 | WP_038349023.1 | hypothetical protein | - |
| PIC49_RS24570 (2397) | 2397..2666 | + | 270 | WP_032291093.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| PIC49_RS24575 (2666) | 2666..2944 | + | 279 | WP_001384452.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| PIC49_RS24580 (2984) | 2984..3832 | + | 849 | WP_032291092.1 | 3'-5' exonuclease | - |
| PIC49_RS24585 (4148) | 4148..4657 | - | 510 | WP_032291091.1 | hypothetical protein | - |
| PIC49_RS24590 (4713) | 4713..5315 | - | 603 | WP_000517687.1 | ProQ/FINO family protein | - |
| PIC49_RS24595 (5668) | 5668..7014 | + | 1347 | WP_063118133.1 | protein YagA | - |
| PIC49_RS24600 (7521) | 7521..7823 | - | 303 | WP_001245884.1 | hypothetical protein | - |
| PIC49_RS24605 (7820) | 7820..8446 | - | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| PIC49_RS24610 (8642) | 8642..9913 | - | 1272 | WP_001703910.1 | Y-family DNA polymerase | - |
| PIC49_RS24615 (9913) | 9913..10350 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| PIC49_RS24620 (10347) | 10347..10595 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| PIC49_RS24625 (11013) | 11013..11915 | + | 903 | WP_001739825.1 | DUF1281 domain-containing protein | - |
| PIC49_RS24630 (11919) | 11919..12005 | + | 87 | Protein_14 | hypothetical protein | - |
| PIC49_RS24635 (12010) | 12010..12345 | - | 336 | WP_001340323.1 | hypothetical protein | - |
| PIC49_RS24640 (12683) | 12683..13663 | + | 981 | WP_012783921.1 | plasmid segregation protein ParM | - |
| PIC49_RS24645 (13666) | 13666..13785 | + | 120 | Protein_17 | plasmid partitioning/stability family protein | - |
| PIC49_RS24650 (14110) | 14110..14394 | + | 285 | Protein_18 | hypothetical protein | - |
| PIC49_RS24655 (14470) | 14470..15155 | + | 686 | Protein_19 | DNA methylase | - |
| PIC49_RS24660 (15156) | 15156..15377 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| PIC49_RS24665 (15307) | 15307..15825 | + | 519 | WP_231530587.1 | DUF1380 family protein | - |
| PIC49_RS24670 (15870) | 15870..16640 | + | 771 | WP_089438460.1 | hypothetical protein | - |
| PIC49_RS24675 (17056) | 17056..17481 | + | 426 | WP_001198900.1 | antirestriction protein | - |
| PIC49_RS24680 (17528) | 17528..17950 | + | 423 | WP_000271688.1 | DUF1380 family protein | - |
| PIC49_RS24685 (17947) | 17947..18138 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| PIC49_RS24690 (18417) | 18417..20084 | - | 1668 | WP_012372796.1 | group II intron reverse transcriptase/maturase | - |
| PIC49_RS24695 (21251) | 21251..21778 | + | 528 | WP_021532391.1 | single-stranded DNA-binding protein | - |
| PIC49_RS24700 (21836) | 21836..22069 | + | 234 | WP_000006024.1 | DUF905 domain-containing protein | - |
| PIC49_RS24705 (22128) | 22128..24086 | + | 1959 | WP_001401579.1 | ParB/RepB/Spo0J family partition protein | - |
| PIC49_RS24710 (24141) | 24141..24575 | + | 435 | WP_001578018.1 | conjugation system SOS inhibitor PsiB | - |
| PIC49_RS24715 (24572) | 24572..25291 | + | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| PIC49_RS24720 (25288) | 25288..25884 | + | 597 | WP_000977998.1 | hypothetical protein | - |
| PIC49_RS24725 (26346) | 26346..26846 | + | 501 | WP_014065718.1 | antirestriction protein ArdA | - |
| PIC49_RS24730 (27578) | 27578..28012 | + | 435 | WP_000218858.1 | hypothetical protein | - |
| PIC49_RS24735 (28106) | 28106..28372 | + | 267 | WP_000804663.1 | hypothetical protein | - |
| PIC49_RS24740 (28549) | 28549..28938 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| PIC49_RS24745 (28935) | 28935..29837 | + | 903 | WP_000038347.1 | ISNCY family transposase ISRor2 | VF |
| PIC49_RS24750 (29899) | 29899..30105 | + | 207 | WP_000150314.1 | hypothetical protein | VF |
| PIC49_RS24755 (30136) | 30136..30387 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| PIC49_RS24760 (30967) | 30967..31815 | + | 849 | WP_089438462.1 | DUF4942 domain-containing protein | - |
| PIC49_RS24765 (31901) | 31901..32236 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| PIC49_RS24770 (32470) | 32470..32802 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| PIC49_RS24775 (32813) | 32813..35509 | + | 2697 | WP_069192527.1 | hypothetical protein | Relaxase |
| PIC49_RS24780 (35546) | 35546..37837 | - | 2292 | WP_072291269.1 | F-type conjugative transfer protein TrbC | - |
| PIC49_RS24785 (37830) | 37830..38900 | - | 1071 | WP_000151583.1 | IncI1-type conjugal transfer protein TrbB | - |
| PIC49_RS24790 (38919) | 38919..40127 | - | 1209 | WP_001383960.1 | IncI1-type conjugal transfer protein TrbA | - |
| PIC49_RS24795 (40345) | 40345..41298 | - | 954 | WP_021513958.1 | hypothetical protein | - |
| - (41492) | 41492..41547 | - | 56 | NuclAT_1 | - | - |
| - (41492) | 41492..41547 | - | 56 | NuclAT_1 | - | - |
| - (41492) | 41492..41547 | - | 56 | NuclAT_1 | - | - |
| - (41492) | 41492..41547 | - | 56 | NuclAT_1 | - | - |
| - (41788) | 41788..41850 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (41788) | 41788..41850 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (41788) | 41788..41850 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (41788) | 41788..41850 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| PIC49_RS24800 (41900) | 41900..42052 | + | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| PIC49_RS24805 (42124) | 42124..42375 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| PIC49_RS24810 (42876) | 42876..42971 | + | 96 | WP_000609148.1 | DinQ-like type I toxin DqlB | - |
| PIC49_RS24815 (43036) | 43036..43212 | - | 177 | WP_001054900.1 | hypothetical protein | - |
| PIC49_RS24820 (43544) | 43544..43753 | + | 210 | WP_000062602.1 | HEAT repeat domain-containing protein | - |
| PIC49_RS24825 (43825) | 43825..44487 | - | 663 | WP_012783935.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| PIC49_RS24830 (44558) | 44558..46726 | - | 2169 | WP_023518847.1 | DotA/TraY family protein | - |
| PIC49_RS24835 (46823) | 46823..47407 | - | 585 | WP_001037987.1 | IncI1-type conjugal transfer protein TraX | - |
| PIC49_RS24840 (47436) | 47436..48638 | - | 1203 | WP_089438463.1 | IncI1-type conjugal transfer protein TraW | - |
| PIC49_RS24845 (48605) | 48605..49219 | - | 615 | WP_000337395.1 | IncI1-type conjugal transfer protein TraV | - |
| PIC49_RS24850 (49219) | 49219..52263 | - | 3045 | WP_001024789.1 | IncI1-type conjugal transfer protein TraU | - |
| PIC49_RS24855 (52353) | 52353..53153 | - | 801 | WP_001164784.1 | IncI1-type conjugal transfer protein TraT | - |
| PIC49_RS24860 (53137) | 53137..53325 | - | 189 | WP_001277253.1 | putative conjugal transfer protein TraS | - |
| PIC49_RS24865 (53389) | 53389..53793 | - | 405 | WP_000086965.1 | IncI1-type conjugal transfer protein TraR | - |
| PIC49_RS24870 (53844) | 53844..54371 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| PIC49_RS24875 (54371) | 54371..55075 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| PIC49_RS24880 (55075) | 55075..56364 | - | 1290 | WP_042004726.1 | conjugal transfer protein TraO | - |
| PIC49_RS24885 (56367) | 56367..57350 | - | 984 | WP_001191877.1 | hypothetical protein | VF |
| PIC49_RS24890 (57361) | 57361..58053 | - | 693 | WP_000138550.1 | DotI/IcmL family type IV secretion protein | - |
| PIC49_RS24895 (58050) | 58050..58397 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| PIC49_RS24900 (58415) | 58415..62182 | - | 3768 | WP_001141527.1 | DUF5710 domain-containing protein | - |
| PIC49_RS24905 (62272) | 62272..62823 | - | 552 | WP_000014583.1 | Phospholipase D | VF |
| PIC49_RS24910 (62838) | 62838..63128 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| PIC49_RS24915 (63125) | 63125..64273 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| PIC49_RS24920 (64270) | 64270..65088 | - | 819 | WP_000646098.1 | hypothetical protein | VF |
| PIC49_RS24925 (65085) | 65085..65543 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| PIC49_RS24930 (65937) | 65937..66521 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| PIC49_RS24935 (66581) | 66581..67783 | - | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| PIC49_RS24940 (67869) | 67869..68693 | - | 825 | WP_001238932.1 | conjugal transfer protein TraE | - |
| PIC49_RS24945 (68844) | 68844..69998 | - | 1155 | WP_001139955.1 | site-specific integrase | - |
| PIC49_RS24950 (71632) | 71632..73056 | - | 1425 | WP_001389385.1 | hypothetical protein | VF |
| PIC49_RS24955 (73056) | 73056..73712 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| PIC49_RS24960 (73697) | 73697..74257 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| PIC49_RS24965 (74267) | 74267..74881 | - | 615 | WP_001542527.1 | hypothetical protein | VF |
| PIC49_RS24970 (74899) | 74899..75996 | - | 1098 | WP_001492931.1 | hypothetical protein | VF |
| PIC49_RS24975 (76009) | 76009..77562 | - | 1554 | WP_001492932.1 | hypothetical protein | VF |
| PIC49_RS24980 (77573) | 77573..78025 | - | 453 | WP_001247870.1 | hypothetical protein | VF |
| PIC49_RS24985 (78012) | 78012..79307 | - | 1296 | WP_001388364.1 | type 4b pilus protein PilO2 | - |
| PIC49_RS24990 (79300) | 79300..80982 | - | 1683 | WP_000748143.1 | hypothetical protein | VF |
| PIC49_RS24995 (80996) | 80996..81433 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| PIC49_RS25000 (81433) | 81433..82500 | - | 1068 | WP_012783947.1 | hypothetical protein | VF |
| PIC49_RS25005 (83124) | 83124..83420 | - | 297 | WP_050571830.1 | hypothetical protein | - |
| PIC49_RS25010 (83587) | 83587..83841 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| PIC49_RS25015 (84003) | 84003..84554 | - | 552 | WP_000744644.1 | hypothetical protein | - |
| PIC49_RS25020 (84727) | 84727..85410 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| PIC49_RS25025 (85664) | 85664..86197 | - | 534 | WP_001303319.1 | transcription termination/antitermination NusG family protein | - |
| PIC49_RS25030 (86639) | 86639..86926 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| PIC49_RS25035 (86964) | 86964..87122 | - | 159 | Protein_95 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|