MGE detailed information
MGE type: Genomic_island MGE length: 10427 bp
Accession: NZ_CP116042 Location: 1027561..1037987 Organism: Salmonella enterica subsp. enterica serovar 14[5]12:i:- strain BL708 Replicon: chromosome
Accession: NZ_CP116042 Location: 1027561..1037987 Organism: Salmonella enterica subsp. enterica serovar 14[5]12:i:- strain BL708 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PGC28_RS04935 (1022674) | 1022674..1023054 | + | 381 | WP_001070479.1 | DUF4440 domain-containing protein | - |
| PGC28_RS04940 (1023110) | 1023110..1025677 | - | 2568 | WP_001005807.1 | DNA mismatch repair protein MutS | - |
| PGC28_RS04945 (1025836) | 1025836..1026357 | + | 522 | WP_000858988.1 | hypothetical protein | - |
| PGC28_RS04950 (1026529) | 1026529..1027185 | - | 657 | WP_000420452.1 | protein-serine/threonine phosphatase | - |
| PGC28_RS04955 (1027532) | 1027532..1027737 | + | 206 | Protein_972 | IS5 family transposase ISEcl3 | Transposase |
| PGC28_RS04960 (1027810) | 1027810..1028337 | - | 528 | WP_000971655.1 | GNAT family N-acetyltransferase | Toxin Detail |
| PGC28_RS04965 (1028334) | 1028334..1028624 | - | 291 | WP_000855692.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| PGC28_RS04970 (1028894) | 1028894..1029072 | - | 179 | Protein_975 | IS3 family transposase | - |
| PGC28_RS04975 (1029313) | 1029313..1029639 | + | 327 | WP_000393302.1 | hypothetical protein | - |
| PGC28_RS04980 (1029912) | 1029912..1030259 | - | 348 | WP_001669174.1 | DUF1493 family protein | - |
| PGC28_RS04985 (1030244) | 1030244..1030693 | - | 450 | WP_000381610.1 | membrane protein | - |
| PGC28_RS04990 (1031124) | 1031124..1031567 | - | 444 | WP_000715092.1 | Type 3 secretion system pilotin | VF |
| PGC28_RS04995 (1032024) | 1032024..1032674 | + | 651 | WP_001674874.1 | Invasion protein InvF | VF |
| PGC28_RS05000 (1032671) | 1032671..1034359 | + | 1689 | WP_000848113.1 | Type 3 secretion system secretin | VF |
| PGC28_RS05005 (1034356) | 1034356..1035474 | + | 1119 | WP_000612171.1 | Protein MxiC | VF |
| PGC28_RS05010 (1035499) | 1035499..1037556 | + | 2058 | WP_000927219.1 | Invasion protein InvA | VF |
| PGC28_RS05015 (1037580) | 1037580..1037987 | + | 408 | WP_001164066.1 | Surface presentation of antigens protein SpaK | VF |
| PGC28_RS05020 (1037984) | 1037984..1039279 | + | 1296 | WP_000856766.1 | SctN family type III secretion system ATPase InvC | - |
| PGC28_RS05025 (1039257) | 1039257..1039700 | + | 444 | WP_001520714.1 | SPI-1 type III secretion system protein SpaM | - |
| PGC28_RS05030 (1039700) | 1039700..1040710 | + | 1011 | WP_000503098.1 | SPI-1 type III secretion system protein SpaN | - |
| PGC28_RS05035 (1040710) | 1040710..1041621 | + | 912 | WP_000058734.1 | SPI-1 type III secretion system protein SpaO | - |
| PGC28_RS05040 (1041611) | 1041611..1042285 | + | 675 | WP_000526016.1 | SPI-1 type III secretion system export apparatus protein SpaP | - |
| PGC28_RS05045 (1042311) | 1042311..1042571 | + | 261 | WP_000342503.1 | SPI-1 type III secretion system export apparatus protein SpaQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA10052 | UFRD01000002 | 4599654..4610080 | 0 |