MGE detailed information
MGE type: Prophage MGE length: 59562 bp
Accession: NZ_CP115887 Location: 1520890..1580451 Organism: Staphylococcus aureus strain C308 Replicon: chromosome
Accession: NZ_CP115887 Location: 1520890..1580451 Organism: Staphylococcus aureus strain C308 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PCM89_RS07105 (1516051) | 1516051..1516299 | + | 249 | WP_001151997.1 | ferredoxin | - |
| PCM89_RS07110 (1516405) | 1516405..1516950 | - | 546 | WP_001186912.1 | ECF transporter S component | - |
| PCM89_RS07115 (1517352) | 1517352..1518296 | - | 945 | WP_001805730.1 | DUF1672 domain-containing protein | - |
| PCM89_RS07120 (1518751) | 1518751..1519659 | - | 909 | WP_001805732.1 | DUF1672 domain-containing protein | - |
| PCM89_RS07125 (1519734) | 1519734..1519880 | - | 147 | WP_001021507.1 | hypothetical protein | - |
| PCM89_RS07130 (1519864) | 1519864..1520799 | - | 936 | WP_024928067.1 | DUF1672 domain-containing protein | - |
| PCM89_RS07135 (1520890) | 1520890..1521105 | - | 216 | WP_170267452.1 | hypothetical protein | - |
| PCM89_RS07140 (1521284) | 1521284..1522294 | - | 1011 | WP_000777019.1 | restriction endonuclease subunit S | - |
| PCM89_RS07145 (1522281) | 1522281..1524185 | - | 1905 | WP_001003363.1 | N-6 DNA methylase | - |
| PCM89_RS07150 (1524546) | 1524546..1525301 | - | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| PCM89_RS07155 (1525313) | 1525313..1525567 | - | 255 | WP_000611512.1 | phage holin | - |
| PCM89_RS07160 (1525619) | 1525619..1525726 | + | 108 | WP_001791821.1 | hypothetical protein | - |
| - (1525648) | 1525648..1525787 | + | 140 | NuclAT_0 | - | Antitoxin Detail |
| - (1525648) | 1525648..1525787 | + | 140 | NuclAT_0 | - | Antitoxin Detail |
| - (1525648) | 1525648..1525787 | + | 140 | NuclAT_0 | - | Antitoxin Detail |
| - (1525648) | 1525648..1525787 | + | 140 | NuclAT_0 | - | Antitoxin Detail |
| PCM89_RS07165 (1525779) | 1525779..1525955 | - | 177 | WP_011447039.1 | type I toxin-antitoxin system toxin PepG1 | Toxin Detail |
| PCM89_RS07170 (1526108) | 1526108..1526407 | - | 300 | WP_000466784.1 | DUF2951 domain-containing protein | - |
| PCM89_RS07175 (1526453) | 1526453..1526617 | - | 165 | WP_000916020.1 | XkdX family protein | - |
| PCM89_RS07180 (1526610) | 1526610..1526999 | - | 390 | WP_001166596.1 | DUF2977 domain-containing protein | - |
| PCM89_RS07185 (1526999) | 1526999..1528465 | - | 1467 | WP_000067127.1 | BppU family phage baseplate upper protein | - |
| PCM89_RS07190 (1528465) | 1528465..1530375 | - | 1911 | WP_000429558.1 | minor structural protein | - |
| PCM89_RS07195 (1530391) | 1530391..1530681 | - | 291 | WP_000179858.1 | hypothetical protein | - |
| PCM89_RS07200 (1530681) | 1530681..1532264 | - | 1584 | WP_000384475.1 | prophage endopeptidase tail family protein | - |
| PCM89_RS07205 (1532273) | 1532273..1533097 | - | 825 | WP_001190527.1 | phage tail family protein | - |
| PCM89_RS07210 (1533097) | 1533097..1539297 | - | 6201 | WP_001670344.1 | phage tail tape measure protein | - |
| PCM89_RS07215 (1539311) | 1539311..1539469 | - | 159 | WP_000438833.1 | hypothetical protein | - |
| PCM89_RS07220 (1539511) | 1539511..1539861 | - | 351 | WP_000589167.1 | hypothetical protein | - |
| PCM89_RS07225 (1539919) | 1539919..1540374 | - | 456 | WP_000169127.1 | Ig-like domain-containing protein | - |
| PCM89_RS07230 (1540466) | 1540466..1541107 | - | 642 | WP_000807536.1 | phage tail protein | - |
| PCM89_RS07235 (1541142) | 1541142..1541537 | - | 396 | WP_001023806.1 | DUF3168 domain-containing protein | - |
| PCM89_RS07240 (1541538) | 1541538..1541939 | - | 402 | WP_000110023.1 | hypothetical protein | - |
| PCM89_RS07245 (1541936) | 1541936..1542268 | - | 333 | WP_000395498.1 | hypothetical protein | - |
| PCM89_RS07250 (1542280) | 1542280..1542558 | - | 279 | WP_000050973.1 | head-tail connector protein | - |
| PCM89_RS07255 (1542627) | 1542627..1543790 | - | 1164 | WP_001670346.1 | phage major capsid protein | - |
| PCM89_RS07260 (1543802) | 1543802..1544575 | - | 774 | WP_000061866.1 | Clp protease ClpP | - |
| PCM89_RS07265 (1544559) | 1544559..1545797 | - | 1239 | WP_001100664.1 | phage portal protein | - |
| PCM89_RS07270 (1545802) | 1545802..1547493 | - | 1692 | WP_000153554.1 | terminase large subunit | - |
| PCM89_RS07275 (1547483) | 1547483..1547788 | - | 306 | WP_000778932.1 | P27 family phage terminase small subunit | - |
| PCM89_RS07280 (1547917) | 1547917..1548231 | - | 315 | WP_000160689.1 | HNH endonuclease | - |
| PCM89_RS07285 (1548388) | 1548388..1548825 | - | 438 | WP_000513699.1 | transcriptional regulator | - |
| PCM89_RS07290 (1548838) | 1548838..1550205 | - | 1368 | WP_075583730.1 | DEAD/DEAH box helicase | - |
| PCM89_RS07295 (1550186) | 1550186..1550476 | - | 291 | WP_000665203.1 | VRR-NUC domain-containing protein | - |
| PCM89_RS07300 (1550610) | 1550610..1550708 | + | 99 | WP_001801650.1 | hypothetical protein | - |
| PCM89_RS07305 (1550817) | 1550817..1553264 | - | 2448 | WP_000884844.1 | virulence-associated E family protein | - |
| PCM89_RS07310 (1553316) | 1553316..1553516 | - | 201 | WP_000265258.1 | DUF1514 family protein | - |
| PCM89_RS07315 (1553584) | 1553584..1553736 | - | 153 | WP_024937088.1 | transcriptional regulator | - |
| PCM89_RS07320 (1553736) | 1553736..1554122 | - | 387 | WP_001623479.1 | hypothetical protein | - |
| PCM89_RS07325 (1554112) | 1554112..1554348 | - | 237 | WP_000483477.1 | hypothetical protein | - |
| PCM89_RS07330 (1554373) | 1554373..1554609 | - | 237 | WP_000195806.1 | DUF1381 domain-containing protein | - |
| PCM89_RS07335 (1554646) | 1554646..1555173 | - | 528 | WP_000185638.1 | dUTP pyrophosphatase | - |
| PCM89_RS07340 (1555166) | 1555166..1555414 | - | 249 | WP_001065075.1 | DUF1024 family protein | - |
| PCM89_RS07345 (1555429) | 1555429..1555671 | - | 243 | WP_000132191.1 | SAV1978 family virulence-associated passenger protein | - |
| PCM89_RS07350 (1555686) | 1555686..1555886 | - | 201 | WP_000235324.1 | hypothetical protein | - |
| PCM89_RS07355 (1555889) | 1555889..1556146 | - | 258 | WP_000022728.1 | DUF3310 domain-containing protein | - |
| PCM89_RS07360 (1556146) | 1556146..1556547 | - | 402 | WP_000113975.1 | PVL family protein | - |
| PCM89_RS07365 (1556547) | 1556547..1556732 | - | 186 | WP_001164629.1 | DUF3113 family protein | - |
| PCM89_RS07370 (1556745) | 1556745..1558697 | - | 1953 | WP_075583731.1 | DNA polymerase | - |
| PCM89_RS07375 (1558766) | 1558766..1559320 | - | 555 | WP_000647288.1 | DUF2815 family protein | - |
| PCM89_RS07380 (1559346) | 1559346..1560512 | - | 1167 | WP_000762534.1 | DUF2800 domain-containing protein | - |
| PCM89_RS07385 (1560509) | 1560509..1560871 | - | 363 | WP_000985986.1 | hypothetical protein | - |
| PCM89_RS07390 (1560886) | 1560886..1561209 | - | 324 | WP_000175000.1 | hypothetical protein | - |
| PCM89_RS07395 (1561288) | 1561288..1561449 | - | 162 | WP_001285954.1 | DUF1270 domain-containing protein | - |
| PCM89_RS07400 (1561462) | 1561462..1561725 | - | 264 | WP_001124160.1 | IS3 family transposase ISVa4 | Transposase |
| PCM89_RS07405 (1561750) | 1561750..1561965 | - | 216 | WP_001097552.1 | hypothetical protein | - |
| PCM89_RS07410 (1562020) | 1562020..1562385 | + | 366 | WP_001128433.1 | hypothetical protein | Antitoxin Detail |
| PCM89_RS07415 (1562354) | 1562354..1562599 | - | 246 | WP_001025401.1 | DUF2829 domain-containing protein | Toxin Detail |
| PCM89_RS07420 (1562666) | 1562666..1563046 | + | 381 | WP_000773059.1 | DUF2513 domain-containing protein | - |
| PCM89_RS07425 (1563033) | 1563033..1563230 | - | 198 | WP_001148860.1 | hypothetical protein | - |
| PCM89_RS07430 (1563300) | 1563300..1563512 | + | 213 | WP_000362644.1 | hypothetical protein | - |
| PCM89_RS07435 (1563553) | 1563553..1563702 | - | 150 | WP_000771849.1 | hypothetical protein | - |
| PCM89_RS07440 (1563717) | 1563717..1564160 | - | 444 | WP_000435357.1 | hypothetical protein | - |
| PCM89_RS07445 (1564208) | 1564208..1564420 | - | 213 | WP_000213811.1 | helix-turn-helix transcriptional regulator | - |
| PCM89_RS07450 (1564572) | 1564572..1565303 | + | 732 | WP_000511090.1 | XRE family transcriptional regulator | - |
| PCM89_RS07455 (1565374) | 1565374..1565556 | + | 183 | WP_000705240.1 | hypothetical protein | - |
| PCM89_RS07460 (1565593) | 1565593..1565739 | + | 147 | WP_001795334.1 | hypothetical protein | - |
| PCM89_RS07465 (1565736) | 1565736..1566350 | - | 615 | WP_000191464.1 | hypothetical protein | - |
| PCM89_RS07470 (1566476) | 1566476..1567681 | + | 1206 | WP_000264751.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| PCM89_RS07475 (1567724) | 1567724..1569760 | - | 2037 | WP_001816962.1 | hypothetical protein | - |
| PCM89_RS07480 (1569763) | 1569763..1570680 | - | 918 | WP_001670353.1 | DUF1672 domain-containing protein | - |
| PCM89_RS07485 (1570932) | 1570932..1572683 | - | 1752 | WP_000987779.1 | two-component system sensor histidine kinase SrrB | - |
| PCM89_RS07490 (1572664) | 1572664..1573389 | - | 726 | WP_000064078.1 | Transcriptional regulatory protein SrrA | VF |
| PCM89_RS07495 (1573522) | 1573522..1574259 | - | 738 | WP_000159577.1 | pseudouridine synthase | - |
| PCM89_RS07500 (1574252) | 1574252..1574794 | - | 543 | WP_000368656.1 | SMC-Scp complex subunit ScpB | - |
| PCM89_RS07505 (1574787) | 1574787..1575518 | - | 732 | WP_000273371.1 | segregation/condensation protein A | - |
| PCM89_RS07510 (1575610) | 1575610..1576116 | + | 507 | WP_001183429.1 | DUF309 domain-containing protein | - |
| PCM89_RS07515 (1576194) | 1576194..1577081 | - | 888 | WP_000447732.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| PCM89_RS07520 (1577130) | 1577130..1577579 | - | 450 | WP_000392691.1 | Fur family transcriptional regulator | - |
| PCM89_RS07525 (1577684) | 1577684..1578226 | - | 543 | WP_000365246.1 | NUDIX hydrolase | - |
| PCM89_RS07530 (1578308) | 1578308..1579216 | + | 909 | WP_001171354.1 | aldo/keto reductase | - |
| PCM89_RS07535 (1579432) | 1579432..1579680 | - | 249 | WP_000995802.1 | hypothetical protein | - |
| PCM89_RS07540 (1579696) | 1579696..1580451 | - | 756 | WP_000678231.1 | SDR family oxidoreductase | - |
| PCM89_RS07545 (1580593) | 1580593..1581408 | + | 816 | WP_000779748.1 | pyrroline-5-carboxylate reductase | - |
| PCM89_RS07550 (1581511) | 1581511..1582431 | - | 921 | WP_000454065.1 | ribonuclease Z | - |
| PCM89_RS07555 (1582744) | 1582744..1584228 | + | 1485 | WP_000105070.1 | glucose-6-phosphate dehydrogenase | - |
| PCM89_RS07560 (1584458) | 1584458..1585324 | + | 867 | WP_000382585.1 | AraC family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|