MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 134756 bp
Accession: NZ_CP115456 Location: 1077635..1212390 Organism: Sphingobium yanoikuyae strain CC4533 Replicon: chromosome
Accession: NZ_CP115456 Location: 1077635..1212390 Organism: Sphingobium yanoikuyae strain CC4533 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PAE53_RS05205 (PAE53_05205) | 1072913..1073839 | + | 927 | WP_270092813.1 | LysR substrate-binding domain-containing protein | - |
| PAE53_RS05210 (PAE53_05210) | 1073885..1074778 | - | 894 | WP_270092814.1 | LysR family transcriptional regulator | - |
| PAE53_RS05215 (PAE53_05215) | 1074892..1075665 | + | 774 | WP_270092815.1 | class III extradiol ring-cleavage dioxygenase | - |
| PAE53_RS05220 (PAE53_05220) | 1075688..1076275 | + | 588 | WP_270092816.1 | NAD(P)H-dependent oxidoreductase | - |
| PAE53_RS05225 (PAE53_05225) | 1076301..1076915 | + | 615 | WP_270092817.1 | YceI family protein | - |
| PAE53_RS05230 (PAE53_05230) | 1077028..1077723 | + | 696 | WP_270092818.1 | dienelactone hydrolase family protein | - |
| PAE53_RS05235 (PAE53_05235) | 1078332..1079945 | + | 1614 | WP_270092819.1 | FAD-dependent oxidoreductase | - |
| PAE53_RS05240 (PAE53_05240) | 1080157..1081116 | - | 960 | WP_270092820.1 | Acetyl esterase | VF |
| PAE53_RS05245 (PAE53_05245) | 1081215..1082423 | - | 1209 | WP_270092821.1 | 3-oxoadipyl-CoA thiolase | - |
| PAE53_RS05250 (PAE53_05250) | 1082436..1083089 | - | 654 | WP_270092822.1 | 3-oxoacid CoA-transferase subunit B | - |
| PAE53_RS05255 (PAE53_05255) | 1083104..1083793 | - | 690 | WP_270092823.1 | 3-oxoacid CoA-transferase subunit A | - |
| PAE53_RS05260 (PAE53_05260) | 1083868..1085331 | - | 1464 | WP_270092824.1 | benzaldehyde dehydrogenase | - |
| PAE53_RS05265 (PAE53_05265) | 1085328..1086176 | - | 849 | WP_270092825.1 | 3-oxoadipate enol-lactonase | - |
| PAE53_RS05270 (PAE53_05270) | 1086307..1087083 | - | 777 | WP_270092826.1 | Levodione reductase | VF |
| PAE53_RS05275 (PAE53_05275) | 1087080..1088129 | - | 1050 | WP_270092827.1 | benzoate 1,2-dioxygenase electron transfer component BenC | - |
| PAE53_RS05280 (PAE53_05280) | 1088135..1088641 | - | 507 | WP_270092828.1 | benzoate 1,2-dioxygenase small subunit | - |
| PAE53_RS05285 (PAE53_05285) | 1088638..1090017 | - | 1380 | WP_270092829.1 | Rieske 2Fe-2S domain-containing protein | - |
| PAE53_RS05290 (PAE53_05290) | 1090045..1090956 | - | 912 | WP_270092830.1 | dioxygenase | - |
| PAE53_RS05295 (PAE53_05295) | 1091012..1091302 | - | 291 | WP_270092831.1 | muconolactone Delta-isomerase | - |
| PAE53_RS05300 (PAE53_05300) | 1091306..1092463 | - | 1158 | WP_270093637.1 | muconate/chloromuconate family cycloisomerase | - |
| PAE53_RS05305 (PAE53_05305) | 1092575..1093507 | + | 933 | WP_270092832.1 | HTH-type transcriptional regulator BenM | VF |
| PAE53_RS05310 (PAE53_05310) | 1093767..1094885 | + | 1119 | WP_270092833.1 | NAD(P)-dependent alcohol dehydrogenase | - |
| PAE53_RS05315 (PAE53_05315) | 1095263..1095928 | - | 666 | WP_270092834.1 | OmpW family outer membrane protein | - |
| PAE53_RS05320 (PAE53_05320) | 1096659..1097135 | + | 477 | WP_270092835.1 | RNA polymerase sigma factor | - |
| PAE53_RS05325 (PAE53_05325) | 1097527..1097841 | + | 315 | WP_270092836.1 | helix-turn-helix transcriptional regulator | - |
| PAE53_RS05330 (PAE53_05330) | 1097878..1098243 | - | 366 | WP_270092837.1 | hypothetical protein | - |
| PAE53_RS05335 (PAE53_05335) | 1098362..1099285 | - | 924 | WP_270092838.1 | HEPN domain-containing protein | - |
| PAE53_RS05340 (PAE53_05340) | 1099296..1099703 | - | 408 | WP_270092839.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PAE53_RS05345 (PAE53_05345) | 1099700..1099954 | - | 255 | WP_270092840.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| PAE53_RS05350 (PAE53_05350) | 1100251..1100367 | + | 117 | Protein_1057 | type II toxin-antitoxin system prevent-host-death family antitoxin | - |
| PAE53_RS05355 (PAE53_05355) | 1100377..1100661 | - | 285 | WP_270093764.1 | hypothetical protein | - |
| PAE53_RS05360 (PAE53_05360) | 1101373..1101564 | - | 192 | WP_270092841.1 | hypothetical protein | - |
| PAE53_RS05365 (PAE53_05365) | 1102343..1103713 | + | 1371 | WP_088184704.1 | IS1380 family transposase ISSp1 | Transposase |
| PAE53_RS05370 (PAE53_05370) | 1104493..1105259 | + | 767 | Protein_1061 | IS5 family transposase IS427 | Transposase |
| PAE53_RS05375 (PAE53_05375) | 1105454..1105933 | + | 480 | WP_270092842.1 | hypothetical protein | - |
| PAE53_RS05380 (PAE53_05380) | 1105930..1106634 | + | 705 | WP_270092843.1 | hypothetical protein | - |
| PAE53_RS05385 (PAE53_05385) | 1106636..1107181 | + | 546 | WP_270092844.1 | hypothetical protein | - |
| PAE53_RS05390 (PAE53_05390) | 1107162..1108502 | + | 1341 | WP_270092845.1 | hypothetical protein | - |
| PAE53_RS05395 (PAE53_05395) | 1108652..1109335 | + | 684 | WP_270092846.1 | hypothetical protein | - |
| PAE53_RS05400 (PAE53_05400) | 1109338..1109793 | + | 456 | WP_270092847.1 | AHH domain-containing protein | - |
| PAE53_RS05405 (PAE53_05405) | 1109744..1110058 | - | 315 | Protein_1068 | RES domain-containing protein | - |
| PAE53_RS05410 (PAE53_05410) | 1110164..1110799 | - | 636 | WP_270092848.1 | hypothetical protein | - |
| PAE53_RS05415 (PAE53_05415) | 1110916..1111356 | + | 441 | WP_270092849.1 | hypothetical protein | - |
| PAE53_RS05420 (PAE53_05420) | 1111357..1115079 | - | 3723 | WP_270092850.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| PAE53_RS05425 (PAE53_05425) | 1115092..1116513 | - | 1422 | WP_270092851.1 | conjugal transfer protein TraH | - |
| PAE53_RS05430 (PAE53_05430) | 1116567..1117142 | - | 576 | WP_270092852.1 | hypothetical protein | - |
| PAE53_RS05435 (PAE53_05435) | 1117142..1117996 | - | 855 | WP_270092853.1 | conjugal transfer protein TraF | - |
| PAE53_RS05440 (PAE53_05440) | 1118102..1118401 | + | 300 | WP_066769168.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| PAE53_RS05445 (PAE53_05445) | 1118423..1118938 | + | 516 | WP_270092854.1 | GNAT family N-acetyltransferase | Toxin Detail |
| PAE53_RS05450 (PAE53_05450) | 1118962..1119567 | - | 606 | WP_066769172.1 | S26 family signal peptidase | - |
| PAE53_RS05455 (PAE53_05455) | 1119539..1120420 | - | 882 | WP_270092855.1 | TrbC family F-type conjugative pilus assembly protein | - |
| PAE53_RS05460 (PAE53_05460) | 1120392..1121516 | - | 1125 | WP_270093638.1 | conjugal transfer protein TraN | - |
| PAE53_RS05465 (PAE53_05465) | 1121513..1123369 | - | 1857 | WP_270093639.1 | hypothetical protein | - |
| PAE53_RS05470 (PAE53_05470) | 1123621..1124637 | - | 1017 | WP_066769180.1 | TraU family protein | - |
| PAE53_RS05475 (PAE53_05475) | 1124634..1125326 | - | 693 | WP_066769181.1 | conjugal transfer protein TraW | - |
| PAE53_RS05480 (PAE53_05480) | 1125316..1125549 | - | 234 | WP_066769183.1 | hypothetical protein | - |
| PAE53_RS05485 (PAE53_05485) | 1125546..1125872 | - | 327 | WP_270092856.1 | hypothetical protein | - |
| PAE53_RS05490 (PAE53_05490) | 1125878..1128376 | - | 2499 | WP_270092857.1 | TraC family protein | - |
| PAE53_RS05495 (PAE53_05495) | 1128373..1129017 | - | 645 | WP_270092858.1 | TraV family lipoprotein | - |
| PAE53_RS05500 (PAE53_05500) | 1129050..1130357 | - | 1308 | WP_270092859.1 | TraB/VirB10 family protein | - |
| PAE53_RS05505 (PAE53_05505) | 1130354..1131088 | - | 735 | WP_270092860.1 | type-F conjugative transfer system secretin TraK | - |
| PAE53_RS05510 (PAE53_05510) | 1131117..1131716 | - | 600 | WP_270092861.1 | TraE/TraK family type IV conjugative transfer system protein | - |
| PAE53_RS05515 (PAE53_05515) | 1131758..1132024 | - | 267 | WP_270092862.1 | type IV conjugative transfer system protein TraL | - |
| PAE53_RS05520 (PAE53_05520) | 1132132..1132449 | - | 318 | WP_270092863.1 | hypothetical protein | - |
| PAE53_RS05525 (PAE53_05525) | 1132646..1133404 | - | 759 | WP_270092864.1 | DsbC family protein | - |
| PAE53_RS05530 (PAE53_05530) | 1133388..1133696 | - | 309 | WP_270092865.1 | hypothetical protein | - |
| PAE53_RS05535 (PAE53_05535) | 1134034..1134483 | + | 450 | WP_270092866.1 | hypothetical protein | - |
| PAE53_RS05540 (PAE53_05540) | 1134595..1135014 | + | 420 | WP_270092867.1 | transcriptional regulator | - |
| PAE53_RS05545 (PAE53_05545) | 1135011..1135646 | + | 636 | WP_270092868.1 | GntR family transcriptional regulator | - |
| PAE53_RS05550 (PAE53_05550) | 1135827..1135967 | + | 141 | WP_270092869.1 | benenodin family lasso peptide | - |
| PAE53_RS05555 (PAE53_05555) | 1136016..1136693 | + | 678 | WP_270092870.1 | lasso peptide biosynthesis B2 protein | - |
| PAE53_RS05560 (PAE53_05560) | 1136690..1138465 | + | 1776 | WP_270092871.1 | asparagine synthetase B family protein | - |
| PAE53_RS05565 (PAE53_05565) | 1138542..1140542 | - | 2001 | WP_270092872.1 | Atxe2 family lasso peptide isopeptidase | - |
| PAE53_RS05570 (PAE53_05570) | 1140569..1143163 | - | 2595 | WP_270093640.1 | Vitamin B12 transporter BtuB | VF |
| PAE53_RS05575 (PAE53_05575) | 1143271..1144335 | - | 1065 | WP_270092873.1 | FecR domain-containing protein | - |
| PAE53_RS05580 (PAE53_05580) | 1144328..1144876 | - | 549 | WP_270092874.1 | sigma-70 family RNA polymerase sigma factor | - |
| PAE53_RS05585 (PAE53_05585) | 1145154..1145549 | - | 396 | WP_270092875.1 | hypothetical protein | - |
| PAE53_RS05590 (PAE53_05590) | 1146171..1147739 | - | 1569 | WP_270092876.1 | IS66 family transposase ISRel8 | Transposase |
| PAE53_RS05595 (PAE53_05595) | 1147807..1148160 | - | 354 | WP_048578803.1 | IS66 family transposase ISMno13 | Transposase |
| PAE53_RS05600 (PAE53_05600) | 1148157..1148579 | - | 423 | WP_270092877.1 | IS66 family transposase ISAzca2 | Transposase |
| PAE53_RS05605 (PAE53_05605) | 1148830..1149768 | + | 939 | WP_270092878.1 | toprim domain-containing protein | - |
| PAE53_RS05610 (PAE53_05610) | 1149802..1151790 | + | 1989 | WP_270092879.1 | ParB/Srx family N-terminal domain-containing protein | - |
| PAE53_RS05615 (PAE53_05615) | 1151883..1152251 | + | 369 | WP_066763142.1 | hypothetical protein | - |
| PAE53_RS05620 (PAE53_05620) | 1152398..1154662 | + | 2265 | WP_270092880.1 | strawberry notch family protein | - |
| PAE53_RS05625 (PAE53_05625) | 1154753..1155985 | + | 1233 | WP_007015824.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| PAE53_RS05630 (PAE53_05630) | 1155982..1157337 | + | 1356 | WP_009823940.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| PAE53_RS05635 (PAE53_05635) | 1157334..1158338 | + | 1005 | WP_009823939.1 | Tyrosine recombinase XerC | VF |
| PAE53_RS05640 (PAE53_05640) | 1158423..1160522 | + | 2100 | Protein_1115 | strawberry notch C-terminal domain-containing protein | - |
| PAE53_RS05645 (PAE53_05645) | 1160590..1161510 | - | 921 | WP_270092881.1 | MucR family transcriptional regulator | - |
| PAE53_RS05650 (PAE53_05650) | 1161675..1162178 | + | 504 | WP_270092882.1 | hypothetical protein | - |
| PAE53_RS05655 (PAE53_05655) | 1162175..1162774 | + | 600 | WP_270092883.1 | hypothetical protein | - |
| PAE53_RS05660 (PAE53_05660) | 1162826..1163530 | + | 705 | WP_270092884.1 | hypothetical protein | - |
| PAE53_RS05665 (PAE53_05665) | 1163534..1163809 | + | 276 | WP_066768092.1 | hypothetical protein | - |
| PAE53_RS05670 (PAE53_05670) | 1163863..1164177 | + | 315 | WP_066768090.1 | hypothetical protein | - |
| PAE53_RS05675 (PAE53_05675) | 1164188..1165201 | + | 1014 | WP_270092885.1 | hypothetical protein | - |
| PAE53_RS05680 (PAE53_05680) | 1165302..1166498 | + | 1197 | WP_270093641.1 | DUF932 domain-containing protein | - |
| PAE53_RS05685 (PAE53_05685) | 1166509..1167126 | + | 618 | WP_270092886.1 | hypothetical protein | - |
| PAE53_RS05690 (PAE53_05690) | 1167228..1167434 | + | 207 | WP_270092887.1 | hypothetical protein | - |
| PAE53_RS05695 (PAE53_05695) | 1167748..1168242 | + | 495 | WP_270092888.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| PAE53_RS05700 (PAE53_05700) | 1168298..1168984 | + | 687 | WP_270092889.1 | hypothetical protein | - |
| PAE53_RS05705 (PAE53_05705) | 1168996..1169508 | + | 513 | WP_270092890.1 | hypothetical protein | - |
| PAE53_RS05710 (PAE53_05710) | 1169554..1170687 | + | 1134 | WP_270092891.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| PAE53_RS05715 (PAE53_05715) | 1170799..1171260 | + | 462 | WP_270092892.1 | hypothetical protein | - |
| PAE53_RS05720 (PAE53_05720) | 1171279..1171599 | + | 321 | WP_270092893.1 | hypothetical protein | - |
| PAE53_RS05725 (PAE53_05725) | 1171648..1173315 | + | 1668 | WP_270092894.1 | ATP-binding protein | - |
| PAE53_RS05730 (PAE53_05730) | 1173361..1173705 | + | 345 | WP_270092895.1 | hypothetical protein | - |
| PAE53_RS05735 (PAE53_05735) | 1173702..1173908 | + | 207 | WP_270092896.1 | hypothetical protein | - |
| PAE53_RS05740 (PAE53_05740) | 1174305..1175000 | - | 696 | WP_270092897.1 | hypothetical protein | - |
| PAE53_RS05745 (PAE53_05745) | 1175386..1175583 | + | 198 | WP_156448104.1 | hypothetical protein | - |
| PAE53_RS05750 (PAE53_05750) | 1176493..1178940 | - | 2448 | WP_270092898.1 | DEAD/DEAH box helicase | - |
| PAE53_RS05755 (PAE53_05755) | 1178937..1180844 | - | 1908 | WP_270092899.1 | TniQ family protein | - |
| PAE53_RS05760 (PAE53_05760) | 1180841..1181971 | - | 1131 | WP_270092900.1 | TniB family NTP-binding protein | - |
| PAE53_RS05765 (PAE53_05765) | 1181968..1184085 | - | 2118 | WP_270092901.1 | hypothetical protein ; Integrase | Integrase |
| PAE53_RS05770 (PAE53_05770) | 1184082..1184762 | - | 681 | WP_270092902.1 | hypothetical protein | - |
| PAE53_RS05775 (PAE53_05775) | 1184857..1185507 | + | 651 | WP_270092903.1 | hypothetical protein | - |
| PAE53_RS05780 (PAE53_05780) | 1185521..1185706 | + | 186 | WP_270092904.1 | hypothetical protein | - |
| PAE53_RS05785 (PAE53_05785) | 1185845..1186114 | + | 270 | WP_066768276.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| PAE53_RS05790 (PAE53_05790) | 1186114..1186407 | + | 294 | WP_270092905.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| PAE53_RS05795 (PAE53_05795) | 1186553..1187053 | + | 501 | WP_270092906.1 | hypothetical protein | - |
| PAE53_RS05800 (PAE53_05800) | 1187082..1187744 | - | 663 | WP_270092907.1 | UPF0149 family protein | - |
| PAE53_RS05805 (PAE53_05805) | 1187829..1188215 | - | 387 | WP_066768268.1 | hypothetical protein | - |
| PAE53_RS05810 (PAE53_05810) | 1188365..1188568 | + | 204 | WP_270092908.1 | DUF5818 domain-containing protein | - |
| PAE53_RS05815 (PAE53_05815) | 1188663..1189574 | - | 912 | WP_270092909.1 | fused MFS/spermidine synthase | - |
| PAE53_RS05820 (PAE53_05820) | 1189567..1189740 | - | 174 | WP_270092910.1 | hypothetical protein | - |
| PAE53_RS05825 (PAE53_05825) | 1189956..1190219 | + | 264 | WP_066768278.1 | helix-turn-helix transcriptional regulator | - |
| PAE53_RS05830 (PAE53_05830) | 1190241..1190549 | + | 309 | WP_270092911.1 | alkylphosphonate utilization protein | - |
| PAE53_RS05835 (PAE53_05835) | 1190549..1190851 | + | 303 | WP_066768260.1 | DUF167 domain-containing protein | - |
| PAE53_RS05840 (PAE53_05840) | 1190859..1191596 | + | 738 | WP_270092912.1 | YoaK family protein | - |
| PAE53_RS05845 (PAE53_05845) | 1191666..1193180 | + | 1515 | WP_270092913.1 | hypothetical protein | - |
| PAE53_RS05850 (PAE53_05850) | 1193177..1195561 | + | 2385 | WP_270092914.1 | hypothetical protein | - |
| PAE53_RS05855 (PAE53_05855) | 1195558..1196322 | + | 765 | WP_066768252.1 | hypothetical protein | - |
| PAE53_RS05860 (PAE53_05860) | 1196405..1197820 | - | 1416 | WP_270092915.1 | UvrD-helicase domain-containing protein | - |
| PAE53_RS05865 (PAE53_05865) | 1197813..1199531 | - | 1719 | WP_270092916.1 | AAA family ATPase | - |
| PAE53_RS05870 (PAE53_05870) | 1199715..1200182 | + | 468 | WP_270092917.1 | hypothetical protein | - |
| PAE53_RS05875 (PAE53_05875) | 1200195..1201301 | + | 1107 | WP_270092918.1 | DUF3800 domain-containing protein | - |
| PAE53_RS05880 (PAE53_05880) | 1202027..1202530 | + | 504 | WP_066769844.1 | DUF736 domain-containing protein | - |
| PAE53_RS05885 (PAE53_05885) | 1202612..1203625 | + | 1014 | WP_270092919.1 | DUF2493 domain-containing protein | - |
| PAE53_RS05890 (PAE53_05890) | 1203776..1204102 | - | 327 | WP_270092920.1 | hypothetical protein | - |
| PAE53_RS05895 (PAE53_05895) | 1204571..1204873 | + | 303 | WP_025291971.1 | hypothetical protein | - |
| PAE53_RS05900 (PAE53_05900) | 1204870..1206918 | + | 2049 | WP_270092921.1 | type IV secretion system DNA-binding domain-containing protein | - |
| PAE53_RS05905 (PAE53_05905) | 1206915..1209899 | + | 2985 | WP_270092922.1 | MobF family relaxase | - |
| PAE53_RS05910 (PAE53_05910) | 1209889..1210440 | + | 552 | WP_270092923.1 | restriction endonuclease | - |
| PAE53_RS05915 (PAE53_05915) | 1210437..1210973 | + | 537 | WP_270092924.1 | lytic transglycosylase domain-containing protein | - |
| PAE53_RS05920 (PAE53_05920) | 1211018..1211218 | + | 201 | WP_270092925.1 | hypothetical protein | - |
| PAE53_RS05925 (PAE53_05925) | 1211215..1212129 | - | 915 | WP_270092926.1 | lipid kinase YegS | - |
| PAE53_RS05930 (PAE53_05930) | 1212164..1213459 | - | 1296 | WP_270092927.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| PAE53_RS05935 (PAE53_05935) | 1213497..1213874 | - | 378 | WP_270092928.1 | DUF2147 domain-containing protein | - |
| PAE53_RS05940 (PAE53_05940) | 1214081..1214335 | - | 255 | Protein_1175 | recombinase family protein | - |
| PAE53_RS05945 (PAE53_05945) | 1214373..1214666 | - | 294 | WP_270092929.1 | helix-turn-helix domain-containing protein | - |
| PAE53_RS05950 (PAE53_05950) | 1214659..1215930 | - | 1272 | WP_270093642.1 | site-specific integrase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|