MGE detailed information
MGE type: Genomic_island MGE length: 16253 bp
Accession: NZ_CP114896 Location: 3999698..4015950 Organism: Escherichia coli strain CM93 Replicon: chromosome
Accession: NZ_CP114896 Location: 3999698..4015950 Organism: Escherichia coli strain CM93 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O6117_RS19480 (3995389) | 3995389..3996702 | - | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| O6117_RS19485 (3996714) | 3996714..3996992 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| O6117_RS19490 (3996989) | 3996989..3998110 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| O6117_RS19495 (3998355) | 3998355..3998471 | - | 117 | Protein_3789 | VOC family protein | - |
| O6117_RS19500 (3998509) | 3998509..3998727 | - | 219 | Protein_3790 | hypothetical protein | - |
| O6117_RS19505 (3998896) | 3998896..3999642 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| O6117_RS19510 (3999698) | 3999698..4000243 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| O6117_RS19515 (4000255) | 4000255..4000512 | - | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| O6117_RS19520 (4001003) | 4001003..4001134 | - | 132 | WP_001309182.1 | hypothetical protein | - |
| O6117_RS19525 (4001250) | 4001250..4002490 | + | 1241 | Protein_3795 | helicase YjhR | - |
| O6117_RS19530 (4002758) | 4002758..4002963 | - | 206 | Protein_3796 | HNH endonuclease | - |
| O6117_RS19535 (4003073) | 4003073..4004053 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| O6117_RS19540 (4004118) | 4004118..4005224 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| O6117_RS19545 (4005244) | 4005244..4005960 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| O6117_RS19550 (4007230) | 4007230..4008438 | - | 1209 | WP_006250222.1 | IS4 family transposase IS10R | Transposase |
| O6117_RS19555 (4008545) | 4008545..4010554 | - | 2010 | Protein_3801 | phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase | - |
| O6117_RS19560 (4010808) | 4010808..4011302 | - | 495 | WP_001308243.1 | DUF2501 domain-containing protein YjjA | - |
| O6117_RS19565 (4011351) | 4011351..4012088 | - | 738 | WP_000799911.1 | IS21 family transposase ISSme2 | Transposase |
| O6117_RS19570 (4012091) | 4012091..4012630 | - | 540 | WP_000098818.1 | primosomal protein DnaT | - |
| O6117_RS19575 (4012737) | 4012737..4013210 | - | 474 | WP_000538191.1 | threonine/serine exporter | - |
| O6117_RS19580 (4013201) | 4013201..4013971 | - | 771 | WP_001338213.1 | threonine/serine exporter ThrE family protein | - |
| O6117_RS19585 (4014590) | 4014590..4015315 | + | 726 | WP_000936635.1 | Putative transcription factor YjjQ | VF |
| O6117_RS19590 (4015273) | 4015273..4015950 | + | 678 | WP_001301727.1 | Transcriptional activator protein BglJ | VF |
| O6117_RS19595 (4015988) | 4015988..4016776 | - | 789 | WP_000331618.1 | siderophore-iron reductase FhuF | - |
| O6117_RS19600 (4016917) | 4016917..4017153 | + | 237 | WP_001393508.1 | DUF1435 domain-containing protein | - |
| O6117_RS19620 (4017782) | 4017782..4018813 | - | 1032 | WP_001272330.1 | 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC | - |
| O6117_RS19625 (4018916) | 4018916..4019329 | + | 414 | WP_000204012.1 | DNA polymerase III subunit psi | - |
| O6117_RS19630 (4019298) | 4019298..4019744 | + | 447 | WP_001092461.1 | ribosomal protein S18-alanine N-acetyltransferase | - |
| O6117_RS19635 (4019759) | 4019759..4020436 | + | 678 | WP_000870710.1 | pyrimidine 5'-nucleotidase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20047 | CP009789 | 4505469..4521845 | 0.002 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22706 | NC_010473 | 4633070..4649322 | 0 |