MGE detailed information
MGE type: Prophage MGE length: 23043 bp
Accession: NZ_CP114896 Location: 1086542..1109584 Organism: Escherichia coli strain CM93 Replicon: chromosome
Accession: NZ_CP114896 Location: 1086542..1109584 Organism: Escherichia coli strain CM93 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O6117_RS05300 (1083057) | 1083057..1083803 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| O6117_RS05305 (1083892) | 1083892..1084578 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| O6117_RS05310 (1084755) | 1084755..1084958 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| O6117_RS05315 (1084993) | 1084993..1086453 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| O6117_RS05320 (1086542) | 1086542..1087909 | - | 1368 | Protein_1036 | MHS family MFS transporter | - |
| O6117_RS05325 (1088430) | 1088430..1088543 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| O6117_RS05330 (1088612) | 1088612..1088845 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| O6117_RS05335 (1089162) | 1089162..1089752 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| O6117_RS05340 (1089850) | 1089850..1090425 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| O6117_RS05345 (1090425) | 1090425..1091387 | - | 963 | WP_001027733.1 | phage tail protein | - |
| O6117_RS05350 (1091338) | 1091338..1091907 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| O6117_RS05355 (1092296) | 1092296..1092529 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| O6117_RS05360 (1092587) | 1092587..1092997 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| O6117_RS05365 (1093149) | 1093149..1093322 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| O6117_RS05370 (1093494) | 1093494..1093649 | - | 156 | WP_001309517.1 | protein YnfN | - |
| O6117_RS05375 (1093728) | 1093728..1093793 | - | 66 | WP_120795388.1 | small protein YnfR | - |
| O6117_RS05380 (1093796) | 1093796..1093984 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| O6117_RS05385 (1093995) | 1093995..1094207 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| O6117_RS05390 (1094570) | 1094570..1095067 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| O6117_RS05395 (1095064) | 1095064..1095597 | - | 534 | WP_001092971.1 | lysozyme | - |
| O6117_RS05400 (1095594) | 1095594..1095905 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| O6117_RS05405 (1095910) | 1095910..1096125 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| O6117_RS05410 (1096345) | 1096345..1096515 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| O6117_RS05415 (1096879) | 1096879..1097094 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| O6117_RS05420 (1097395) | 1097395..1097607 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| O6117_RS05425 (1097662) | 1097662..1097751 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| O6117_RS05430 (1098029) | 1098029..1098781 | - | 753 | WP_001047135.1 | antitermination protein | - |
| O6117_RS05435 (1098795) | 1098795..1099844 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| O6117_RS05440 (1099846) | 1099846..1100124 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| O6117_RS05445 (1100191) | 1100191..1100442 | - | 252 | WP_000980994.1 | protein Rem | - |
| O6117_RS05450 (1100659) | 1100659..1100814 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| O6117_RS05455 (1100886) | 1100886..1101173 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| O6117_RS05460 (1101173) | 1101173..1101412 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| O6117_RS05465 (1101437) | 1101437..1101742 | + | 306 | WP_001326990.1 | protein YdfV | - |
| O6117_RS05470 (1101945) | 1101945..1102277 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| O6117_RS05475 (1102714) | 1102714..1102863 | - | 150 | WP_011443592.1 | protein YdfW | - |
| O6117_RS05480 (1102898) | 1102898..1103176 | - | 279 | Protein_1068 | protein YdfX | - |
| O6117_RS05485 (1103160) | 1103160..1103390 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| O6117_RS05490 (1103474) | 1103474..1103881 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| O6117_RS05495 (1104048) | 1104048..1104203 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| O6117_RS05500 (1104205) | 1104205..1104333 | + | 129 | WP_000344964.1 | protein YdfB | - |
| O6117_RS05505 (1104363) | 1104363..1104581 | + | 219 | WP_001171942.1 | protein YdfC | - |
| O6117_RS05510 (1105149) | 1105149..1105337 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| O6117_RS05515 (1105334) | 1105334..1105525 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| O6117_RS05520 (1105618) | 1105618..1106385 | + | 768 | Protein_1076 | exonuclease | - |
| O6117_RS05525 (1106382) | 1106382..1107077 | + | 696 | Protein_1077 | IS3 family transposase IS2 | Transposase |
| O6117_RS05530 (1107091) | 1107091..1107396 | + | 306 | Protein_1078 | DUF3596 domain-containing protein | - |
| O6117_RS05540 (1108727) | 1108727..1109584 | + | 858 | Protein_1080 | Putative defective protein IntQ ; Integrase | Integrase |
| O6117_RS05545 (1109772) | 1109772..1110791 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| O6117_RS05550 (1110803) | 1110803..1112017 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| O6117_RS05555 (1112223) | 1112223..1112549 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| O6117_RS05560 (1112684) | 1112684..1113025 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| O6117_RS05565 (1113060) | 1113060..1113620 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| O6117_RS05570 (1113623) | 1113623..1114333 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.002 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0 |