MGE detailed information
MGE type: Prophage MGE length: 23043 bp
Accession: NZ_CP114895 Location: 2271311..2294353 Organism: Escherichia coli strain CM56 Replicon: chromosome
Accession: NZ_CP114895 Location: 2271311..2294353 Organism: Escherichia coli strain CM56 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O6106_RS11125 (2267826) | 2267826..2268572 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| O6106_RS11130 (2268661) | 2268661..2269347 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| O6106_RS11135 (2269524) | 2269524..2269727 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| O6106_RS11140 (2269762) | 2269762..2271222 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| O6106_RS11145 (2271311) | 2271311..2272678 | - | 1368 | Protein_2156 | MHS family MFS transporter | - |
| O6106_RS11150 (2273199) | 2273199..2273312 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| O6106_RS11155 (2273381) | 2273381..2273614 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| O6106_RS11160 (2273931) | 2273931..2274521 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| O6106_RS11165 (2274619) | 2274619..2275194 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| O6106_RS11170 (2275194) | 2275194..2276156 | - | 963 | WP_001027733.1 | phage tail protein | - |
| O6106_RS11175 (2276107) | 2276107..2276676 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| O6106_RS11180 (2277065) | 2277065..2277298 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| O6106_RS11185 (2277356) | 2277356..2277766 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| O6106_RS11190 (2277918) | 2277918..2278091 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| O6106_RS11195 (2278263) | 2278263..2278418 | - | 156 | WP_001309517.1 | protein YnfN | - |
| O6106_RS11200 (2278497) | 2278497..2278562 | - | 66 | WP_120795388.1 | small protein YnfR | - |
| O6106_RS11205 (2278565) | 2278565..2278753 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| O6106_RS11210 (2278764) | 2278764..2278976 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| O6106_RS11215 (2279339) | 2279339..2279836 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| O6106_RS11220 (2279833) | 2279833..2280366 | - | 534 | WP_001092971.1 | lysozyme | - |
| O6106_RS11225 (2280363) | 2280363..2280674 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| O6106_RS11230 (2280679) | 2280679..2280894 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| O6106_RS11235 (2281114) | 2281114..2281284 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| O6106_RS11240 (2281648) | 2281648..2281863 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| O6106_RS11245 (2282164) | 2282164..2282376 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| O6106_RS11250 (2282431) | 2282431..2282520 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| O6106_RS11255 (2282798) | 2282798..2283550 | - | 753 | WP_001047135.1 | antitermination protein | - |
| O6106_RS11260 (2283564) | 2283564..2284613 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| O6106_RS11265 (2284615) | 2284615..2284893 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| O6106_RS11270 (2284960) | 2284960..2285211 | - | 252 | WP_000980994.1 | protein Rem | - |
| O6106_RS11275 (2285428) | 2285428..2285583 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| O6106_RS11280 (2285655) | 2285655..2285942 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| O6106_RS11285 (2285942) | 2285942..2286181 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| O6106_RS11290 (2286206) | 2286206..2286511 | + | 306 | WP_001326990.1 | protein YdfV | - |
| O6106_RS11295 (2286714) | 2286714..2287046 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| O6106_RS11300 (2287483) | 2287483..2287632 | - | 150 | WP_011443592.1 | protein YdfW | - |
| O6106_RS11305 (2287667) | 2287667..2287945 | - | 279 | Protein_2188 | protein YdfX | - |
| O6106_RS11310 (2287929) | 2287929..2288159 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| O6106_RS11315 (2288243) | 2288243..2288650 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| O6106_RS11320 (2288817) | 2288817..2288972 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| O6106_RS11325 (2288974) | 2288974..2289102 | + | 129 | WP_000344964.1 | protein YdfB | - |
| O6106_RS11330 (2289132) | 2289132..2289350 | + | 219 | WP_001171942.1 | protein YdfC | - |
| O6106_RS11335 (2289918) | 2289918..2290106 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| O6106_RS11340 (2290103) | 2290103..2290294 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| O6106_RS11345 (2290387) | 2290387..2291154 | + | 768 | Protein_2196 | exonuclease | - |
| O6106_RS11350 (2291151) | 2291151..2291846 | + | 696 | Protein_2197 | IS3 family transposase IS2 | Transposase |
| O6106_RS11355 (2291860) | 2291860..2292165 | + | 306 | Protein_2198 | DUF3596 domain-containing protein | - |
| O6106_RS11365 (2293496) | 2293496..2294353 | + | 858 | Protein_2200 | Putative defective protein IntQ ; Integrase | Integrase |
| O6106_RS11370 (2294541) | 2294541..2295560 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| O6106_RS11375 (2295572) | 2295572..2296786 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| O6106_RS11380 (2296992) | 2296992..2297318 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| O6106_RS11385 (2297453) | 2297453..2297794 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| O6106_RS11390 (2297829) | 2297829..2298389 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| O6106_RS11395 (2298392) | 2298392..2299102 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.002 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0 |