MGE detailed information
MGE type: Prophage MGE length: 23043 bp
Accession: NZ_CP114894 Location: 982542..1005584 Organism: Escherichia coli strain CM19 Replicon: chromosome
Accession: NZ_CP114894 Location: 982542..1005584 Organism: Escherichia coli strain CM19 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O6X69_RS04825 (979057) | 979057..979803 | + | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| O6X69_RS04830 (979892) | 979892..980578 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| O6X69_RS04835 (980755) | 980755..980958 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| O6X69_RS04840 (980993) | 980993..982453 | - | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| O6X69_RS04845 (982542) | 982542..983909 | - | 1368 | Protein_941 | MHS family MFS transporter | - |
| O6X69_RS04850 (984430) | 984430..984543 | + | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| O6X69_RS04855 (984612) | 984612..984845 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| O6X69_RS04860 (985162) | 985162..985752 | + | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| O6X69_RS04865 (985850) | 985850..986425 | - | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| O6X69_RS04870 (986425) | 986425..987387 | - | 963 | WP_001027733.1 | phage tail protein | - |
| O6X69_RS04875 (987338) | 987338..987907 | - | 570 | WP_000453612.1 | DNA-packaging protein | - |
| O6X69_RS04880 (988296) | 988296..988529 | + | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| O6X69_RS04885 (988587) | 988587..988997 | + | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| O6X69_RS04890 (989149) | 989149..989322 | - | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| O6X69_RS04895 (989494) | 989494..989649 | - | 156 | WP_001309517.1 | protein YnfN | - |
| O6X69_RS04900 (989728) | 989728..989793 | - | 66 | WP_120795388.1 | small protein YnfR | - |
| O6X69_RS04905 (989796) | 989796..989984 | - | 189 | WP_071524604.1 | cold-shock protein | - |
| O6X69_RS04910 (989995) | 989995..990207 | - | 213 | WP_000066495.1 | cold shock protein CspI | - |
| O6X69_RS04915 (990570) | 990570..991067 | - | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| O6X69_RS04920 (991064) | 991064..991597 | - | 534 | WP_001092971.1 | lysozyme | - |
| O6X69_RS04925 (991594) | 991594..991905 | - | 312 | WP_000189916.1 | YdfR family protein | - |
| O6X69_RS04930 (991910) | 991910..992125 | - | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| O6X69_RS04935 (992345) | 992345..992515 | + | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| O6X69_RS04940 (992879) | 992879..993094 | - | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| O6X69_RS04945 (993395) | 993395..993607 | + | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| O6X69_RS04950 (993662) | 993662..993751 | + | 90 | WP_120795389.1 | hypothetical protein | - |
| O6X69_RS04955 (994029) | 994029..994781 | - | 753 | WP_001047135.1 | antitermination protein | - |
| O6X69_RS04960 (994795) | 994795..995844 | - | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| O6X69_RS04965 (995846) | 995846..996124 | - | 279 | WP_012304870.1 | hypothetical protein | - |
| O6X69_RS04970 (996191) | 996191..996442 | - | 252 | WP_000980994.1 | protein Rem | - |
| O6X69_RS04975 (996659) | 996659..996814 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| O6X69_RS04980 (996886) | 996886..997173 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| O6X69_RS04985 (997173) | 997173..997412 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| O6X69_RS04990 (997437) | 997437..997742 | + | 306 | WP_001326990.1 | protein YdfV | - |
| O6X69_RS04995 (997945) | 997945..998277 | + | 333 | WP_001301033.1 | FlxA-like family protein | - |
| O6X69_RS05000 (998714) | 998714..998863 | - | 150 | WP_011443592.1 | protein YdfW | - |
| O6X69_RS05005 (998898) | 998898..999176 | - | 279 | Protein_973 | protein YdfX | - |
| O6X69_RS05010 (999160) | 999160..999390 | - | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| O6X69_RS05015 (999474) | 999474..999881 | + | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| O6X69_RS05020 (1000048) | 1000048..1000203 | + | 156 | WP_000379575.1 | DUF1391 family protein | - |
| O6X69_RS05025 (1000205) | 1000205..1000333 | + | 129 | WP_000344964.1 | protein YdfB | - |
| O6X69_RS05030 (1000363) | 1000363..1000581 | + | 219 | WP_001171942.1 | protein YdfC | - |
| O6X69_RS05035 (1001149) | 1001149..1001337 | + | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| O6X69_RS05040 (1001334) | 1001334..1001525 | + | 192 | WP_001083297.1 | lysis protein YdfD | - |
| O6X69_RS05045 (1001618) | 1001618..1002385 | + | 768 | Protein_981 | exonuclease | - |
| O6X69_RS05050 (1002382) | 1002382..1003077 | + | 696 | Protein_982 | IS3 family transposase IS2 | Transposase |
| O6X69_RS05055 (1003091) | 1003091..1003396 | + | 306 | Protein_983 | DUF3596 domain-containing protein | - |
| O6X69_RS05065 (1004727) | 1004727..1005584 | + | 858 | Protein_985 | Putative defective protein IntQ ; Integrase | Integrase |
| O6X69_RS05070 (1005772) | 1005772..1006791 | - | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| O6X69_RS05075 (1006803) | 1006803..1008017 | - | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| O6X69_RS05080 (1008223) | 1008223..1008549 | - | 327 | WP_000598292.1 | YnfA family protein | - |
| O6X69_RS05085 (1008684) | 1008684..1009025 | + | 342 | WP_000705211.1 | DUF1283 family protein | - |
| O6X69_RS05090 (1009060) | 1009060..1009620 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| O6X69_RS05095 (1009623) | 1009623..1010333 | - | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.002 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0 |