MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 47025 bp
Accession: NZ_CP114195 Location: 677362..724386 Organism: Vibrio parahaemolyticus strain vp-HL-202005 Replicon: chromosome
Accession: NZ_CP114195 Location: 677362..724386 Organism: Vibrio parahaemolyticus strain vp-HL-202005 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| O1Q84_RS20215 (O1Q84_20215) | 672552..672938 | + | 387 | WP_108653711.1 | type IV conjugative transfer system lipoprotein TraV | - |
| O1Q84_RS20220 (O1Q84_20220) | 672947..675535 | + | 2589 | WP_108653742.1 | type IV secretion system protein TraC | - |
| O1Q84_RS20225 (O1Q84_20225) | 675532..675879 | + | 348 | WP_029863998.1 | type-F conjugative transfer system protein TrbI | - |
| O1Q84_RS20230 (O1Q84_20230) | 675882..676556 | + | 675 | WP_029863997.1 | type-F conjugative transfer system protein TraW | - |
| O1Q84_RS20235 (O1Q84_20235) | 676553..677560 | + | 1008 | WP_108653710.1 | conjugal transfer pilus assembly protein TraU | - |
| O1Q84_RS20240 (O1Q84_20240) | 677572..678147 | + | 576 | WP_108653709.1 | hypothetical protein | - |
| O1Q84_RS20245 (O1Q84_20245) | 678151..678759 | + | 609 | WP_108653708.1 | hypothetical protein | - |
| O1Q84_RS20250 (O1Q84_20250) | 678903..679583 | + | 681 | WP_236578051.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| O1Q84_RS20255 (O1Q84_20255) | 679580..681316 | + | 1737 | WP_108653706.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| O1Q84_RS20260 (O1Q84_20260) | 681339..682130 | + | 792 | WP_236578052.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| O1Q84_RS20265 (O1Q84_20265) | 682152..682565 | + | 414 | WP_108653704.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| O1Q84_RS20270 (O1Q84_20270) | 682776..684185 | + | 1410 | WP_108653703.1 | conjugal transfer protein TraH | - |
| O1Q84_RS20275 (O1Q84_20275) | 684189..686996 | + | 2808 | WP_108653702.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| O1Q84_RS20280 (O1Q84_20280) | 687076..687633 | + | 558 | WP_108653701.1 | hypothetical protein | - |
| O1Q84_RS20285 (O1Q84_20285) | 687786..689879 | + | 2094 | WP_269169621.1 | type IV conjugative transfer system coupling protein TraD | - |
| O1Q84_RS20290 (O1Q84_20290) | 690128..690847 | + | 720 | WP_236578071.1 | endonuclease | - |
| O1Q84_RS20295 (O1Q84_20295) | 691048..691197 | + | 150 | WP_108653698.1 | Hok/Gef family protein | - |
| O1Q84_RS20300 (O1Q84_20300) | 691301..697096 | + | 5796 | WP_108653697.1 | conjugative transfer relaxase/helicase TraI | - |
| O1Q84_RS20305 (O1Q84_20305) | 697117..697476 | - | 360 | WP_108653741.1 | hypothetical protein | - |
| O1Q84_RS20310 (O1Q84_20310) | 697662..697967 | + | 306 | WP_146026769.1 | hypothetical protein | - |
| O1Q84_RS20315 (O1Q84_20315) | 698036..698479 | - | 444 | WP_031428056.1 | hypothetical protein | VF |
| O1Q84_RS20320 (O1Q84_20320) | 698533..698875 | - | 343 | Protein_619 | type I restriction endonuclease subunit M | - |
| O1Q84_RS20325 (O1Q84_20325) | 698949..699335 | - | 387 | WP_031428057.1 | hypothetical protein | - |
| O1Q84_RS20330 (O1Q84_20330) | 699339..699719 | - | 381 | WP_031428060.1 | hypothetical protein | - |
| O1Q84_RS20335 (O1Q84_20335) | 700727..700948 | - | 222 | WP_031428062.1 | hypothetical protein | - |
| O1Q84_RS20340 (O1Q84_20340) | 700956..701087 | - | 132 | WP_265182829.1 | hypothetical protein | - |
| O1Q84_RS20345 (O1Q84_20345) | 702371..702586 | - | 216 | WP_031428064.1 | hypothetical protein | - |
| O1Q84_RS20350 (O1Q84_20350) | 703135..703629 | - | 495 | WP_031428066.1 | hypothetical protein | - |
| O1Q84_RS20355 (O1Q84_20355) | 704045..704203 | - | 159 | WP_235191550.1 | hypothetical protein | - |
| O1Q84_RS20360 (O1Q84_20360) | 704857..705459 | + | 603 | WP_031428068.1 | DUF2913 family protein | - |
| O1Q84_RS20365 (O1Q84_20365) | 705495..705983 | - | 489 | WP_031428070.1 | DNA repair protein RadC | - |
| O1Q84_RS20370 (O1Q84_20370) | 706833..708113 | + | 1281 | WP_108653694.1 | SgrR family transcriptional regulator | - |
| O1Q84_RS20375 (O1Q84_20375) | 708180..708545 | + | 366 | WP_031428075.1 | hypothetical protein | - |
| O1Q84_RS20380 (O1Q84_20380) | 708889..709827 | - | 939 | WP_031428077.1 | DMT family transporter | - |
| O1Q84_RS20385 (O1Q84_20385) | 709931..710812 | + | 882 | WP_108653693.1 | HTH-type transcriptional regulator CatM | VF |
| O1Q84_RS20390 (O1Q84_20390) | 711016..711504 | - | 489 | WP_108653692.1 | DUF523 domain-containing protein | - |
| O1Q84_RS20395 (O1Q84_20395) | 711622..712128 | - | 507 | WP_229607483.1 | ClbS/DfsB family four-helix bundle protein | - |
| O1Q84_RS20400 (O1Q84_20400) | 712226..712294 | - | 69 | WP_080254664.1 | DUF3265 domain-containing protein | - |
| O1Q84_RS20405 (O1Q84_20405) | 712369..712617 | + | 249 | WP_025611568.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| O1Q84_RS20410 (O1Q84_20410) | 712607..712897 | + | 291 | WP_108653690.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| O1Q84_RS20415 (O1Q84_20415) | 713050..713319 | - | 270 | WP_029865924.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| O1Q84_RS20420 (O1Q84_20420) | 713312..713566 | - | 255 | WP_029865959.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin Detail |
| O1Q84_RS20425 (O1Q84_20425) | 713668..713760 | - | 93 | WP_140321407.1 | DUF3265 domain-containing protein | - |
| O1Q84_RS20430 (O1Q84_20430) | 713875..714843 | + | 969 | WP_159404068.1 | IS30 family transposase ISVa6 | Transposase |
| O1Q84_RS20435 (O1Q84_20435) | 715387..716379 | - | 993 | WP_108654759.1 | hypothetical protein | - |
| O1Q84_RS20440 (O1Q84_20440) | 717093..718163 | + | 1071 | WP_108653902.1 | hypothetical protein | - |
| O1Q84_RS20445 (O1Q84_20445) | 718296..719126 | + | 831 | WP_108653901.1 | hypothetical protein | - |
| O1Q84_RS20450 (O1Q84_20450) | 719131..719460 | + | 330 | WP_031428126.1 | hypothetical protein | - |
| O1Q84_RS20455 (O1Q84_20455) | 719667..720743 | - | 1077 | WP_031428128.1 | glycerol dehydrogenase | - |
| O1Q84_RS20460 (O1Q84_20460) | 720802..722202 | - | 1401 | WP_102780305.1 | aldehyde dehydrogenase family protein | - |
| O1Q84_RS20465 (O1Q84_20465) | 722220..723410 | - | 1191 | WP_159404363.1 | FIST N-terminal domain-containing protein | - |
| O1Q84_RS20470 (O1Q84_20470) | 723735..724424 | - | 690 | WP_159404364.1 | EAL domain-containing protein | - |
| O1Q84_RS20475 (O1Q84_20475) | 724435..725481 | - | 1047 | WP_269169622.1 | hypothetical protein | - |
| O1Q84_RS20480 (O1Q84_20480) | 725478..726146 | - | 669 | WP_031428140.1 | fimbria/pilus periplasmic chaperone | - |
| O1Q84_RS20485 (O1Q84_20485) | 726125..728602 | - | 2478 | WP_031428142.1 | hypothetical protein | - |
| O1Q84_RS20490 (O1Q84_20490) | 728691..729236 | - | 546 | WP_031428144.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|