MGE detailed information
MGE type: Prophage MGE length: 23043 bp
Accession: NZ_CP110859 Location: 2237424..2260466 Organism: Escherichia coli strain TSW4881-W1 Replicon: chromosome
Accession: NZ_CP110859 Location: 2237424..2260466 Organism: Escherichia coli strain TSW4881-W1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OQ464_RS10760 (2232675) | 2232675..2233385 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| OQ464_RS10765 (2233388) | 2233388..2233948 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| OQ464_RS10770 (2233983) | 2233983..2234324 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| OQ464_RS10775 (2234459) | 2234459..2234785 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| OQ464_RS10780 (2234991) | 2234991..2236205 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| OQ464_RS10785 (2236217) | 2236217..2237236 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| OQ464_RS10790 (2237424) | 2237424..2238281 | - | 858 | Protein_2109 | Putative defective protein IntQ ; Integrase | Integrase |
| OQ464_RS10795 (2238373) | 2238373..2239601 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| OQ464_RS10800 (2239612) | 2239612..2239917 | - | 306 | Protein_2111 | DUF3596 domain-containing protein | - |
| OQ464_RS10805 (2239931) | 2239931..2240626 | - | 696 | Protein_2112 | IS3 family transposase IS2 | Transposase |
| OQ464_RS10810 (2240623) | 2240623..2241390 | - | 768 | Protein_2113 | exonuclease | - |
| OQ464_RS10815 (2241483) | 2241483..2241674 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| OQ464_RS10820 (2241671) | 2241671..2241859 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| OQ464_RS10825 (2242427) | 2242427..2242645 | - | 219 | WP_001171942.1 | protein YdfC | - |
| OQ464_RS10830 (2242675) | 2242675..2242803 | - | 129 | WP_000344964.1 | protein YdfB | - |
| OQ464_RS10835 (2242805) | 2242805..2242960 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| OQ464_RS10840 (2243127) | 2243127..2243534 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| OQ464_RS10845 (2243618) | 2243618..2243848 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| OQ464_RS10850 (2243832) | 2243832..2244110 | + | 279 | Protein_2121 | hypothetical protein | - |
| OQ464_RS10855 (2244145) | 2244145..2244294 | + | 150 | WP_011443592.1 | protein YdfW | - |
| OQ464_RS10860 (2244731) | 2244731..2245063 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| OQ464_RS10865 (2245266) | 2245266..2245571 | - | 306 | WP_001326990.1 | protein YdfV | - |
| OQ464_RS10870 (2245596) | 2245596..2245835 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| OQ464_RS10875 (2245835) | 2245835..2246122 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| OQ464_RS10880 (2246194) | 2246194..2246349 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| OQ464_RS10885 (2246566) | 2246566..2246817 | + | 252 | WP_000980994.1 | protein Rem | - |
| OQ464_RS10890 (2246884) | 2246884..2247162 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| OQ464_RS10895 (2247164) | 2247164..2248213 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| OQ464_RS10900 (2248227) | 2248227..2248979 | + | 753 | WP_001047135.1 | antitermination protein | - |
| OQ464_RS10905 (2249257) | 2249257..2249346 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| OQ464_RS10910 (2249401) | 2249401..2249613 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| OQ464_RS10915 (2249914) | 2249914..2250129 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| OQ464_RS10920 (2250493) | 2250493..2250663 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| OQ464_RS10925 (2250883) | 2250883..2251098 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| OQ464_RS10930 (2251103) | 2251103..2251414 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| OQ464_RS10935 (2251411) | 2251411..2251944 | + | 534 | WP_001092971.1 | lysozyme | - |
| OQ464_RS10940 (2251941) | 2251941..2252438 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| OQ464_RS10945 (2252801) | 2252801..2253013 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| OQ464_RS10950 (2253024) | 2253024..2253212 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| OQ464_RS10955 (2253215) | 2253215..2253280 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| OQ464_RS10960 (2253359) | 2253359..2253514 | + | 156 | WP_001309517.1 | protein YnfN | - |
| OQ464_RS10965 (2253686) | 2253686..2253859 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| OQ464_RS10970 (2254011) | 2254011..2254421 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| OQ464_RS10975 (2254479) | 2254479..2254712 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| OQ464_RS10980 (2255101) | 2255101..2255670 | + | 570 | WP_064673984.1 | DNA-packaging protein | - |
| OQ464_RS10985 (2255621) | 2255621..2256583 | + | 963 | WP_001027733.1 | phage tail protein | - |
| OQ464_RS10990 (2256583) | 2256583..2257158 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| OQ464_RS10995 (2257256) | 2257256..2257846 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| OQ464_RS11000 (2258163) | 2258163..2258396 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| OQ464_RS11005 (2258465) | 2258465..2258578 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| OQ464_RS11010 (2259099) | 2259099..2260466 | + | 1368 | Protein_2153 | MHS family MFS transporter | - |
| OQ464_RS11015 (2260555) | 2260555..2262015 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| OQ464_RS11020 (2262050) | 2262050..2262253 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| OQ464_RS11025 (2262430) | 2262430..2263116 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| OQ464_RS11030 (2263205) | 2263205..2263951 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.001 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.002 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.001 |