MGE detailed information
MGE type: Prophage MGE length: 21707 bp
Accession: NZ_CP110814 Location: 2226863..2248569 Organism: Escherichia coli strain THB42-F4 Replicon: chromosome
Accession: NZ_CP110814 Location: 2226863..2248569 Organism: Escherichia coli strain THB42-F4 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N0552_RS10695 (2222114) | 2222114..2222824 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| N0552_RS10700 (2222827) | 2222827..2223387 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| N0552_RS10705 (2223422) | 2223422..2223763 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| N0552_RS10710 (2223898) | 2223898..2224224 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| N0552_RS10715 (2224430) | 2224430..2225644 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| N0552_RS10720 (2225656) | 2225656..2226675 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| N0552_RS10725 (2226863) | 2226863..2228020 | - | 1158 | Protein_2093 | Putative defective protein IntQ ; Integrase | Integrase |
| N0552_RS10730 (2228034) | 2228034..2228729 | - | 696 | Protein_2094 | IS3 family transposase IS2 | Transposase |
| N0552_RS10735 (2228726) | 2228726..2229493 | - | 768 | Protein_2095 | exonuclease | - |
| N0552_RS10740 (2229586) | 2229586..2229777 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| N0552_RS10745 (2229774) | 2229774..2229962 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| N0552_RS10750 (2230530) | 2230530..2230748 | - | 219 | WP_001171942.1 | protein YdfC | - |
| N0552_RS10755 (2230778) | 2230778..2230906 | - | 129 | WP_000344964.1 | protein YdfB | - |
| N0552_RS10760 (2230908) | 2230908..2231063 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| N0552_RS10765 (2231230) | 2231230..2231637 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| N0552_RS10770 (2231721) | 2231721..2231951 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| N0552_RS10775 (2231935) | 2231935..2232213 | + | 279 | Protein_2103 | hypothetical protein | - |
| N0552_RS10780 (2232248) | 2232248..2232397 | + | 150 | WP_011443592.1 | protein YdfW | - |
| N0552_RS10785 (2232834) | 2232834..2233166 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| N0552_RS10790 (2233369) | 2233369..2233674 | - | 306 | WP_001326990.1 | protein YdfV | - |
| N0552_RS10795 (2233699) | 2233699..2233938 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| N0552_RS10800 (2233938) | 2233938..2234225 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| N0552_RS10805 (2234297) | 2234297..2234452 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| N0552_RS10810 (2234669) | 2234669..2234920 | + | 252 | WP_000980994.1 | protein Rem | - |
| N0552_RS10815 (2234987) | 2234987..2235265 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| N0552_RS10820 (2235267) | 2235267..2236316 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| N0552_RS10825 (2236330) | 2236330..2237082 | + | 753 | WP_001047135.1 | antitermination protein | - |
| N0552_RS10830 (2237360) | 2237360..2237449 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| N0552_RS10835 (2237504) | 2237504..2237716 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| N0552_RS10840 (2238017) | 2238017..2238232 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| N0552_RS10845 (2238596) | 2238596..2238766 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| N0552_RS10850 (2238986) | 2238986..2239201 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| N0552_RS10855 (2239206) | 2239206..2239517 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| N0552_RS10860 (2239514) | 2239514..2240047 | + | 534 | WP_001092971.1 | lysozyme | - |
| N0552_RS10865 (2240044) | 2240044..2240541 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| N0552_RS10870 (2240904) | 2240904..2241116 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| N0552_RS10875 (2241127) | 2241127..2241315 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| N0552_RS10880 (2241318) | 2241318..2241383 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| N0552_RS10885 (2241462) | 2241462..2241617 | + | 156 | WP_001309517.1 | protein YnfN | - |
| N0552_RS10890 (2241789) | 2241789..2241962 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| N0552_RS10895 (2242114) | 2242114..2242524 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| N0552_RS10900 (2242582) | 2242582..2242815 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| N0552_RS10905 (2243204) | 2243204..2243773 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| N0552_RS10910 (2243724) | 2243724..2244686 | + | 963 | WP_001027733.1 | phage tail protein | - |
| N0552_RS10915 (2244686) | 2244686..2245261 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| N0552_RS10920 (2245359) | 2245359..2245949 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| N0552_RS10925 (2246266) | 2246266..2246499 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| N0552_RS10930 (2246568) | 2246568..2246681 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| N0552_RS10935 (2247202) | 2247202..2248569 | + | 1368 | Protein_2135 | MHS family MFS transporter | - |
| N0552_RS10940 (2248658) | 2248658..2250118 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| N0552_RS10945 (2250153) | 2250153..2250356 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| N0552_RS10950 (2250533) | 2250533..2251219 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| N0552_RS10955 (2251308) | 2251308..2252054 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.002 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0 |