MGE detailed information
MGE type: Genomic_island MGE length: 31881 bp
Accession: NZ_CP110814 Location: 1098445..1130325 Organism: Escherichia coli strain THB42-F4 Replicon: chromosome
Accession: NZ_CP110814 Location: 1098445..1130325 Organism: Escherichia coli strain THB42-F4 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N0552_RS05280 (1094629) | 1094629..1095897 | - | 1269 | WP_000271909.1 | L-2-hydroxyglutarate oxidase | - |
| N0552_RS05285 (1095917) | 1095917..1096894 | - | 978 | WP_000993126.1 | glutarate dioxygenase GlaH | - |
| N0552_RS05290 (1097230) | 1097230..1099482 | - | 2253 | Protein_1032 | alpha-amylase family glycosyl hydrolase | - |
| N0552_RS05300 (1100868) | 1100868..1102241 | + | 1374 | Protein_1033 | DUF5507 domain-containing protein | - |
| N0552_RS05305 (1102587) | 1102587..1102745 | + | 159 | Protein_1034 | recombinase family protein | - |
| N0552_RS05310 (1102969) | 1102969..1103088 | + | 120 | WP_001120794.1 | hypothetical protein | - |
| N0552_RS05315 (1103153) | 1103153..1107733 | + | 4581 | WP_010723187.1 | putative autotransporter | VF |
| N0552_RS05320 (1108097) | 1108097..1108426 | - | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | Toxin Detail |
| N0552_RS05325 (1108447) | 1108447..1108764 | - | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| N0552_RS05330 (1108802) | 1108802..1109002 | - | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
| N0552_RS05335 (1109011) | 1109011..1109493 | - | 483 | WP_001407480.1 | RadC family protein | - |
| N0552_RS05340 (1109502) | 1109502..1109960 | - | 459 | WP_000211841.1 | antirestriction protein | - |
| N0552_RS05345 (1110063) | 1110063..1110286 | - | 224 | Protein_1042 | DUF905 family protein | - |
| N0552_RS05350 (1110858) | 1110858..1112561 | - | 1704 | WP_000896263.1 | protein YfjW | - |
| N0552_RS05355 (1112703) | 1112703..1113712 | + | 1010 | Protein_1044 | arsenic transporter | - |
| N0552_RS05360 (1113725) | 1113725..1113877 | + | 153 | Protein_1045 | arsenate reductase | - |
| N0552_RS05365 (1114264) | 1114264..1114731 | - | 468 | WP_000702495.1 | protein YfjT | - |
| N0552_RS05370 (1114755) | 1114755..1115198 | - | 444 | WP_000824222.1 | lipoprotein YfjS | - |
| N0552_RS05375 (1115198) | 1115198..1115434 | - | 237 | WP_001144029.1 | protein YpjK | - |
| N0552_RS05380 (1115475) | 1115475..1116176 | - | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| N0552_RS05385 (1116393) | 1116393..1117214 | - | 822 | WP_000197391.1 | DUF932 domain-containing protein | - |
| N0552_RS05390 (1117306) | 1117306..1118169 | - | 864 | WP_000787597.1 | GTPase family protein | - |
| N0552_RS05395 (1118524) | 1118524..1118895 | - | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin Detail |
| N0552_RS05400 (1118888) | 1118888..1119961 | - | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin Detail |
| N0552_RS05405 (1120103) | 1120103..1120366 | + | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| N0552_RS05410 (1120726) | 1120726..1122342 | + | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| N0552_RS05415 (1122339) | 1122339..1124528 | + | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| N0552_RS05420 (1124706) | 1124706..1125332 | - | 627 | WP_000220524.1 | inovirus Gp2 family protein | - |
| N0552_RS05425 (1125485) | 1125485..1126894 | - | 1410 | WP_000481742.1 | YfjI family protein | - |
| N0552_RS05430 (1127023) | 1127023..1127235 | - | 213 | WP_001065343.1 | DNA-binding transcriptional activator AlpA | - |
| N0552_RS05435 (1127279) | 1127279..1128235 | + | 957 | WP_000510827.1 | protein YfjH | - |
| N0552_RS05440 (1128479) | 1128479..1129720 | - | 1242 | WP_000101723.1 | Prophage integrase IntA ; Integrase | Integrase |
| N0552_RS05450 (1130501) | 1130501..1130983 | - | 483 | WP_000162574.1 | SsrA-binding protein SmpB | - |
| N0552_RS05455 (1131154) | 1131154..1131591 | + | 438 | WP_001300750.1 | type II toxin-antitoxin system toxin RatA | - |
| N0552_RS05460 (1131581) | 1131581..1131871 | + | 291 | WP_001117838.1 | RnfH family protein | - |
| N0552_RS05465 (1131933) | 1131933..1132274 | - | 342 | WP_001203437.1 | outer membrane protein assembly factor BamE | - |
| N0552_RS05470 (1132423) | 1132423..1134084 | - | 1662 | WP_000880910.1 | DNA repair protein RecN | - |
| N0552_RS05475 (1134170) | 1134170..1135048 | - | 879 | WP_001059169.1 | NAD(+) kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20085, TA20086 | HG738867 | 3996347..4028227 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285030, TA285031 | NZ_HG738867 | 3996347..4028227 | 0 |