MGE detailed information
MGE type: Genomic_island MGE length: 16253 bp
Accession: NZ_CP110018 Location: 4634420..4650672 Organism: Escherichia coli strain DH10B Replicon: chromosome
Accession: NZ_CP110018 Location: 4634420..4650672 Organism: Escherichia coli strain DH10B Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OLR78_RS22655 (4630111) | 4630111..4631424 | - | 1314 | WP_000460843.1 | PTS sugar transporter subunit IIC SgcC | - |
| OLR78_RS22660 (4631436) | 4631436..4631714 | - | 279 | WP_000722973.1 | PTS sugar transporter subunit IIB SgcB | - |
| OLR78_RS22665 (4631711) | 4631711..4632832 | - | 1122 | WP_000010829.1 | M42 family metallopeptidase | - |
| OLR78_RS22670 (4633077) | 4633077..4633193 | - | 117 | Protein_4414 | VOC family protein | - |
| OLR78_RS22675 (4633231) | 4633231..4633449 | - | 219 | Protein_4415 | hypothetical protein | - |
| OLR78_RS22680 (4633618) | 4633618..4634364 | - | 747 | WP_000354251.1 | class I SAM-dependent methyltransferase | - |
| OLR78_RS22685 (4634420) | 4634420..4634965 | - | 546 | WP_001309181.1 | N-acetyltransferase | Antitoxin Detail |
| OLR78_RS22690 (4634977) | 4634977..4635234 | - | 258 | WP_001054376.1 | YjhX family toxin | Toxin Detail |
| OLR78_RS22695 (4635725) | 4635725..4635856 | - | 132 | WP_001309182.1 | hypothetical protein | - |
| OLR78_RS22700 (4635972) | 4635972..4637212 | + | 1241 | Protein_4420 | helicase YjhR | - |
| OLR78_RS22705 (4637480) | 4637480..4637685 | - | 206 | Protein_4421 | HNH endonuclease | - |
| OLR78_RS22710 (4637795) | 4637795..4638775 | - | 981 | WP_000991438.1 | 9-O-acetyl-N-acetylneuraminic acid deacetylase | - |
| OLR78_RS22715 (4638840) | 4638840..4639946 | - | 1107 | WP_001309184.1 | N-acetylneuraminate epimerase | - |
| OLR78_RS22720 (4639966) | 4639966..4640682 | - | 717 | WP_001295734.1 | N-acetylneuraminic acid outer membrane channel NanC | - |
| OLR78_RS22725 (4641952) | 4641952..4643160 | - | 1209 | WP_006250222.1 | IS4 family transposase IS10R | Transposase |
| OLR78_RS22730 (4643267) | 4643267..4645276 | - | 2010 | Protein_4426 | phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase | - |
| OLR78_RS22735 (4645530) | 4645530..4646024 | - | 495 | WP_001308243.1 | DUF2501 domain-containing protein YjjA | - |
| OLR78_RS22740 (4646073) | 4646073..4646810 | - | 738 | WP_000799911.1 | IS21 family transposase ISSme2 | Transposase |
| OLR78_RS22745 (4646813) | 4646813..4647352 | - | 540 | WP_000098818.1 | primosomal protein DnaT | - |
| OLR78_RS22750 (4647459) | 4647459..4647932 | - | 474 | WP_000538191.1 | threonine/serine exporter | - |
| OLR78_RS22755 (4647923) | 4647923..4648693 | - | 771 | WP_001338213.1 | threonine/serine exporter ThrE family protein | - |
| OLR78_RS22760 (4649312) | 4649312..4650037 | + | 726 | WP_000936635.1 | Putative transcription factor YjjQ | VF |
| OLR78_RS22765 (4649995) | 4649995..4650672 | + | 678 | WP_001301727.1 | Transcriptional activator protein BglJ | VF |
| OLR78_RS22770 (4650710) | 4650710..4651498 | - | 789 | WP_000331618.1 | siderophore-iron reductase FhuF | - |
| OLR78_RS22775 (4651639) | 4651639..4651875 | + | 237 | WP_001393508.1 | DUF1435 domain-containing protein | - |
| OLR78_RS22795 (4652504) | 4652504..4653535 | - | 1032 | WP_001272330.1 | 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC | - |
| OLR78_RS22800 (4653638) | 4653638..4654051 | + | 414 | WP_000204012.1 | DNA polymerase III subunit psi | - |
| OLR78_RS22805 (4654020) | 4654020..4654466 | + | 447 | WP_001092461.1 | ribosomal protein S18-alanine N-acetyltransferase | - |
| OLR78_RS22810 (4654481) | 4654481..4655158 | + | 678 | WP_000870710.1 | pyrimidine 5'-nucleotidase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20047 | CP009789 | 4505469..4521845 | 0.002 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22706 | NC_010473 | 4633070..4649322 | 0 |