MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 28508 bp
Accession: NZ_CP109889 Location: 1..28508 Organism: Xylella fastidiosa subsp. fastidiosa strain CFBP8073 Replicon: plasmid pXF-P2CFBP8073
Accession: NZ_CP109889 Location: 1..28508 Organism: Xylella fastidiosa subsp. fastidiosa strain CFBP8073 Replicon: plasmid pXF-P2CFBP8073
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OK117_RS12465 (OK117_12475) | 43..321 | + | 279 | WP_024748579.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| OK117_RS12470 (OK117_12480) | 293..622 | + | 330 | WP_024748578.1 | type II toxin-antitoxin system YafQ family toxin | - |
| OK117_RS12475 (OK117_12485) | 753..1196 | - | 444 | WP_014607318.1 | hypothetical protein | - |
| OK117_RS12480 (OK117_12490) | 1197..1949 | - | 753 | WP_058564981.1 | conjugal transfer protein TraL | - |
| OK117_RS12485 (OK117_12495) | 1962..2222 | - | 261 | WP_199276035.1 | hypothetical protein | - |
| OK117_RS12490 (OK117_12500) | 2595..3224 | + | 630 | WP_233341820.1 | hypothetical protein | Relaxase |
| OK117_RS12495 (OK117_12505) | 3243..3497 | + | 255 | WP_014607322.1 | hypothetical protein | - |
| OK117_RS12500 (OK117_12510) | 3503..4603 | + | 1101 | WP_038211569.1 | zeta toxin family protein | - |
| OK117_RS12505 (OK117_12515) | 4663..4926 | + | 264 | WP_038211571.1 | antitoxin | Antitoxin Detail |
| OK117_RS12510 (OK117_12520) | 4923..5249 | + | 327 | WP_038230332.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| OK117_RS12515 (OK117_12525) | 5308..6444 | - | 1137 | WP_233341821.1 | hypothetical protein | Relaxase |
| OK117_RS12520 (OK117_12530) | 6510..7616 | - | 1107 | WP_058564982.1 | hypothetical protein | - |
| OK117_RS12525 (OK117_12535) | 7629..9905 | - | 2277 | WP_058564983.1 | hypothetical protein | VF |
| OK117_RS12530 (OK117_12540) | 9902..10945 | - | 1044 | WP_058564984.1 | Type IV secretion system protein VirB11 | VF |
| OK117_RS12535 (OK117_12545) | 10923..12221 | - | 1299 | WP_058564985.1 | hypothetical protein | VF |
| OK117_RS12540 (OK117_12550) | 12224..13003 | - | 780 | WP_013087974.1 | Type IV secretion system protein virB9 | VF |
| OK117_RS12545 (OK117_12555) | 13000..13710 | - | 711 | WP_058564986.1 | Type IV secretion system protein PtlE | VF |
| OK117_RS12550 (OK117_12560) | 13714..14697 | - | 984 | WP_058564987.1 | type IV secretion system protein | - |
| OK117_RS12555 (OK117_12565) | 14967..15632 | - | 666 | WP_058564989.1 | Type IV secretion system protein virB5 | VF |
| OK117_RS12560 (OK117_12570) | 15635..18049 | - | 2415 | WP_058564990.1 | Type IV secretion system protein virB4 | VF |
| OK117_RS12565 (OK117_12575) | 18012..18395 | - | 384 | WP_013087959.1 | VirB3 family type IV secretion system protein | - |
| OK117_RS12570 (OK117_12580) | 18400..18720 | - | 321 | WP_058564991.1 | TrbC/VirB2 family protein | - |
| OK117_RS12575 (OK117_12585) | 18723..19202 | - | 480 | WP_081046867.1 | hypothetical protein | - |
| OK117_RS12580 (OK117_12590) | 19205..19384 | - | 180 | WP_081046870.1 | hypothetical protein | - |
| OK117_RS12585 (OK117_12595) | 20203..20418 | - | 216 | WP_058564999.1 | helix-turn-helix transcriptional regulator | - |
| OK117_RS12590 (OK117_12600) | 20716..21480 | + | 765 | WP_272143429.1 | hypothetical protein | - |
| OK117_RS12595 (OK117_12605) | 22164..22418 | + | 255 | WP_058565086.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| OK117_RS12600 (OK117_12610) | 22415..22858 | + | 444 | WP_199276045.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| OK117_RS12605 (OK117_12615) | 22918..23241 | + | 324 | WP_058565084.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| OK117_RS12610 (OK117_12620) | 23488..23811 | - | 324 | WP_058565083.1 | hypothetical protein | - |
| OK117_RS12615 (OK117_12625) | 23974..24204 | - | 231 | WP_058565082.1 | DUF6290 family protein | - |
| OK117_RS12620 (OK117_12630) | 24714..25127 | + | 414 | WP_058565080.1 | hypothetical protein | - |
| OK117_RS12625 (OK117_12635) | 25277..25702 | - | 426 | WP_058565079.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| OK117_RS12630 (OK117_12640) | 25699..25956 | - | 258 | WP_058565078.1 | hypothetical protein | Antitoxin Detail |
| OK117_RS12635 (OK117_12645) | 26140..26742 | + | 603 | WP_272143436.1 | Tn3 family transposase TnBth3 | Transposase |
| OK117_RS12640 (OK117_12650) | 26739..27605 | + | 867 | WP_230950003.1 | plasmid replication initiator TrfA | - |
| OK117_RS12645 (OK117_12655) | 28055..28291 | + | 237 | WP_272143440.1 | antitoxin MazE family protein | - |
| OK117_RS12650 (OK117_12660) | 28288..28508 | + | 221 | Protein_37 | type II toxin-antitoxin system PemK/MazF family toxin | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|