MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 97481 bp
Accession: NZ_CP107113 Location: 2057288..2154768 Organism: Clostridioides difficile strain R_cdtRKO10.3 Replicon: chromosome
Accession: NZ_CP107113 Location: 2057288..2154768 Organism: Clostridioides difficile strain R_cdtRKO10.3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OGM24_RS09625 (OGM24_09625) | 2052778..2054319 | + | 1542 | WP_079754356.1 | SdrD B-like domain-containing protein | - |
| OGM24_RS09630 (OGM24_09630) | 2054338..2054619 | + | 282 | WP_009891898.1 | CD1845 family protein | - |
| OGM24_RS09635 (OGM24_09635) | 2054705..2055727 | + | 1023 | WP_009891897.1 | DUF6017 domain-containing protein | - |
| OGM24_RS09640 (OGM24_09640) | 2055729..2056214 | + | 486 | WP_009891896.1 | PcfB family protein | - |
| OGM24_RS09645 (OGM24_09645) | 2056211..2057197 | + | 987 | Protein_1816 | type IV secretory system conjugative DNA transfer family protein | - |
| OGM24_RS09650 (OGM24_09650) | 2057288..2059168 | + | 1881 | WP_012816185.1 | hypothetical protein ; Integrase | Integrase |
| OGM24_RS09655 (OGM24_09655) | 2059195..2059548 | + | 354 | WP_012816186.1 | TnpV protein | - |
| OGM24_RS09660 (OGM24_09660) | 2059565..2059864 | + | 300 | WP_004612693.1 | hypothetical protein | - |
| OGM24_RS09665 (OGM24_09665) | 2059892..2060260 | - | 369 | WP_012816188.1 | helix-turn-helix transcriptional regulator | - |
| OGM24_RS09670 (OGM24_09670) | 2060405..2060593 | + | 189 | WP_007884040.1 | helix-turn-helix domain-containing protein | - |
| OGM24_RS09675 (OGM24_09675) | 2060586..2061278 | + | 693 | WP_024738629.1 | Transcriptional regulatory protein WalR | VF |
| OGM24_RS09680 (OGM24_09680) | 2061284..2062201 | + | 918 | WP_012816190.1 | HAMP domain-containing sensor histidine kinase | - |
| OGM24_RS09685 (OGM24_09685) | 2062336..2063262 | + | 927 | WP_104732837.1 | Bacitracin transport ATP-binding protein BcrA | VF |
| OGM24_RS09690 (OGM24_09690) | 2063255..2064040 | + | 786 | WP_012816192.1 | ABC transporter permease | - |
| OGM24_RS09695 (OGM24_09695) | 2064043..2064822 | + | 780 | WP_002594767.1 | ABC transporter permease | - |
| OGM24_RS09700 (OGM24_09700) | 2064830..2065291 | + | 462 | WP_012816193.1 | hypothetical protein | - |
| OGM24_RS09705 (OGM24_09705) | 2065736..2066149 | + | 414 | WP_012816194.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| OGM24_RS09710 (OGM24_09710) | 2066251..2066703 | + | 453 | WP_012816195.1 | sigma-24 (feci) | - |
| OGM24_RS09715 (OGM24_09715) | 2066714..2067175 | + | 462 | WP_009296689.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| OGM24_RS09720 (OGM24_09720) | 2067204..2067494 | + | 291 | WP_024739841.1 | DUF3847 domain-containing protein | - |
| OGM24_RS09725 (OGM24_09725) | 2067681..2069126 | + | 1446 | WP_104732839.1 | MobQ family relaxase | - |
| OGM24_RS09730 (OGM24_09730) | 2069234..2069524 | - | 291 | WP_002596328.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| OGM24_RS09735 (OGM24_09735) | 2069521..2069799 | - | 279 | WP_005924829.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| OGM24_RS09740 (OGM24_09740) | 2069926..2070324 | + | 399 | WP_012816198.1 | cysteine-rich VLP domain-containing protein | - |
| OGM24_RS09745 (OGM24_09745) | 2070438..2071172 | + | 735 | WP_012816199.1 | phage replisome organizer N-terminal domain-containing protein | - |
| OGM24_RS09750 (OGM24_09750) | 2071169..2072032 | + | 864 | WP_104732840.1 | IS21 family transposase ISBlo1 | Transposase |
| OGM24_RS09755 (OGM24_09755) | 2072076..2072270 | + | 195 | WP_104732841.1 | transposon-encoded TnpW family protein | - |
| OGM24_RS09760 (OGM24_09760) | 2072348..2072713 | + | 366 | WP_104732842.1 | hypothetical protein | - |
| OGM24_RS09765 (OGM24_09765) | 2072808..2073389 | + | 582 | Protein_1840 | TraM recognition domain-containing protein | - |
| OGM24_RS09770 (OGM24_09770) | 2073487..2073864 | + | 378 | WP_009891894.1 | TnpV protein | - |
| OGM24_RS09775 (OGM24_09775) | 2073878..2074159 | + | 282 | WP_009891893.1 | hypothetical protein | - |
| OGM24_RS09780 (OGM24_09780) | 2074281..2075129 | - | 849 | WP_009891891.1 | helix-turn-helix transcriptional regulator | - |
| OGM24_RS09785 (OGM24_09785) | 2075495..2075788 | + | 294 | WP_021407349.1 | hypothetical protein | - |
| OGM24_RS09790 (OGM24_09790) | 2075772..2076077 | + | 306 | WP_074014306.1 | molecular chaperone | - |
| OGM24_RS09795 (OGM24_09795) | 2076505..2077749 | + | 1245 | WP_021422885.1 | hypothetical protein | - |
| OGM24_RS09800 (OGM24_09800) | 2077765..2078451 | + | 687 | WP_074014307.1 | CHC2 zinc finger domain-containing protein | - |
| OGM24_RS09805 (OGM24_09805) | 2078411..2079769 | + | 1359 | WP_009891879.1 | virulence-associated E family protein | - |
| OGM24_RS09810 (OGM24_09810) | 2080037..2080204 | + | 168 | WP_009891878.1 | hypothetical protein | - |
| OGM24_RS09815 (OGM24_09815) | 2080277..2081929 | + | 1653 | WP_012816204.1 | hypothetical protein ; Integrase | Integrase |
| OGM24_RS09820 (OGM24_09820) | 2081977..2082432 | - | 456 | WP_009901261.1 | hypothetical protein | - |
| OGM24_RS09825 (OGM24_09825) | 2082456..2084129 | - | 1674 | WP_009893984.1 | hypothetical protein ; Integrase | Integrase |
| OGM24_RS09830 (OGM24_09830) | 2084207..2084380 | - | 174 | WP_002604472.1 | transposon-encoded TnpW family protein | - |
| OGM24_RS09835 (OGM24_09835) | 2084839..2085081 | - | 243 | WP_002604473.1 | helix-turn-helix domain-containing protein | - |
| OGM24_RS09840 (OGM24_09840) | 2085065..2085502 | - | 438 | WP_002604474.1 | sigma-70 family RNA polymerase sigma factor | - |
| OGM24_RS09845 (OGM24_09845) | 2085976..2086959 | - | 984 | WP_002584956.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| OGM24_RS09850 (OGM24_09850) | 2086976..2087161 | - | 186 | WP_003431289.1 | cysteine-rich KTR domain-containing protein | - |
| OGM24_RS09855 (OGM24_09855) | 2087772..2087933 | + | 162 | Protein_1858 | helix-turn-helix domain-containing protein | - |
| OGM24_RS09860 (OGM24_09860) | 2088204..2088914 | - | 711 | WP_009891854.1 | LytTR family DNA-binding domain-containing protein | - |
| OGM24_RS09865 (OGM24_09865) | 2088919..2089092 | - | 174 | WP_002576203.1 | helix-turn-helix domain-containing protein | - |
| OGM24_RS09870 (OGM24_09870) | 2089234..2089467 | + | 234 | Protein_1861 | conjugal transfer protein TraG | - |
| OGM24_RS09875 (OGM24_09875) | 2089631..2089942 | + | 312 | WP_009891846.1 | single-stranded DNA-binding protein | - |
| OGM24_RS09880 (OGM24_09880) | 2089946..2090098 | + | 153 | Protein_1863 | Maff2 family protein | - |
| OGM24_RS09885 (OGM24_09885) | 2090260..2090532 | + | 273 | WP_009274451.1 | helix-turn-helix domain-containing protein | - |
| OGM24_RS09890 (OGM24_09890) | 2090492..2090869 | + | 378 | WP_009274452.1 | TnpV protein | - |
| OGM24_RS09895 (OGM24_09895) | 2090986..2091420 | + | 435 | WP_009274453.1 | MarR family transcriptional regulator | - |
| OGM24_RS09900 (OGM24_09900) | 2091413..2092714 | + | 1302 | WP_012816206.1 | MATE family efflux transporter | - |
| OGM24_RS09905 (OGM24_09905) | 2092808..2093614 | - | 807 | WP_012816207.1 | helix-turn-helix domain-containing protein | - |
| OGM24_RS09910 (OGM24_09910) | 2094098..2094286 | + | 189 | WP_055058411.1 | hypothetical protein | - |
| OGM24_RS09915 (OGM24_09915) | 2094283..2094624 | + | 342 | WP_003020305.1 | DeoR family transcriptional regulator | - |
| OGM24_RS09920 (OGM24_09920) | 2094617..2094913 | + | 297 | WP_012816208.1 | DUF3847 domain-containing protein | - |
| OGM24_RS09925 (OGM24_09925) | 2095213..2095356 | + | 144 | WP_009274458.1 | hypothetical protein | - |
| OGM24_RS09930 (OGM24_09930) | 2095544..2097124 | + | 1581 | WP_042520383.1 | MobQ family relaxase | - |
| OGM24_RS09935 (OGM24_09935) | 2097190..2097834 | + | 645 | WP_042520382.1 | CHC2 zinc finger domain-containing protein | - |
| OGM24_RS09940 (OGM24_09940) | 2097803..2099140 | + | 1338 | WP_042520381.1 | virulence-associated E family protein | - |
| OGM24_RS09945 (OGM24_09945) | 2099382..2099579 | + | 198 | WP_004612761.1 | hypothetical protein | - |
| OGM24_RS09950 (OGM24_09950) | 2099580..2101250 | + | 1671 | WP_012816213.1 | hypothetical protein ; Integrase | Integrase |
| OGM24_RS09955 (OGM24_09955) | 2101341..2101424 | + | 84 | Protein_1878 | Maff2 family protein | - |
| OGM24_RS09960 (OGM24_09960) | 2101444..2102307 | + | 864 | WP_009893980.1 | CD0415/CD1112 family protein | - |
| OGM24_RS09965 (OGM24_09965) | 2102325..2102585 | + | 261 | WP_009888259.1 | hypothetical protein | - |
| OGM24_RS09970 (OGM24_09970) | 2102589..2102978 | + | 390 | WP_009888260.1 | PrgI family protein | - |
| OGM24_RS09975 (OGM24_09975) | 2102890..2105319 | + | 2430 | WP_009888261.1 | ATP-binding protein | - |
| OGM24_RS09980 (OGM24_09980) | 2105323..2107455 | + | 2133 | WP_009888262.1 | CHAP domain-containing protein | - |
| OGM24_RS09985 (OGM24_09985) | 2107467..2107706 | + | 240 | WP_009888263.1 | hypothetical protein | - |
| OGM24_RS09990 (OGM24_09990) | 2107681..2109222 | + | 1542 | WP_009893977.1 | DUF4366 domain-containing protein | - |
| OGM24_RS09995 (OGM24_09995) | 2109317..2111023 | + | 1707 | WP_009893975.1 | DNA topoisomerase 3 | - |
| OGM24_RS10000 (OGM24_10000) | 2111108..2111911 | + | 804 | WP_004804477.1 | KilA-N domain-containing protein | - |
| OGM24_RS10005 (OGM24_10005) | 2111994..2120723 | + | 8730 | WP_009893973.1 | DEAD/DEAH box helicase family protein | - |
| OGM24_RS10010 (OGM24_10010) | 2120766..2121425 | + | 660 | WP_010826392.1 | hypothetical protein | - |
| OGM24_RS10015 (OGM24_10015) | 2121565..2121795 | + | 231 | WP_009889816.1 | helix-turn-helix transcriptional regulator | - |
| OGM24_RS10020 (OGM24_10020) | 2121998..2123620 | + | 1623 | WP_009889819.1 | AAA family ATPase | - |
| OGM24_RS10025 (OGM24_10025) | 2123617..2124684 | + | 1068 | WP_009889821.1 | UvrD-helicase domain-containing protein | - |
| OGM24_RS10030 (OGM24_10030) | 2124712..2125173 | + | 462 | WP_009889823.1 | hypothetical protein | - |
| OGM24_RS10035 (OGM24_10035) | 2125163..2125969 | + | 807 | WP_009889825.1 | PQQ-like beta-propeller repeat protein | - |
| OGM24_RS10040 (OGM24_10040) | 2126005..2127336 | - | 1332 | WP_009889829.1 | relaxase/mobilization nuclease domain-containing protein | - |
| OGM24_RS10045 (OGM24_10045) | 2127342..2127692 | - | 351 | WP_009889831.1 | plasmid mobilization relaxosome protein MobC | - |
| OGM24_RS10050 (OGM24_10050) | 2128026..2129183 | + | 1158 | WP_009893966.1 | TlpA disulfide reductase family protein | - |
| OGM24_RS10055 (OGM24_10055) | 2129205..2129357 | + | 153 | WP_003426158.1 | CD1871A family CXXC motif-containing protein | - |
| OGM24_RS10060 (OGM24_10060) | 2129350..2130240 | + | 891 | WP_009889834.1 | 4Fe-4S binding protein | - |
| OGM24_RS10065 (OGM24_10065) | 2130259..2131536 | + | 1278 | WP_009889836.1 | ABC transporter permease | - |
| OGM24_RS10070 (OGM24_10070) | 2131546..2132202 | + | 657 | WP_003426165.1 | putative ABC transporter ATP-binding protein | VF |
| OGM24_RS10075 (OGM24_10075) | 2132202..2133578 | + | 1377 | WP_009893965.1 | ABC transporter permease | - |
| OGM24_RS10080 (OGM24_10080) | 2133676..2134329 | + | 654 | WP_009889840.1 | Transcriptional regulatory protein QseB | VF |
| OGM24_RS10085 (OGM24_10085) | 2134326..2135645 | + | 1320 | WP_009889841.1 | HAMP domain-containing sensor histidine kinase | - |
| OGM24_RS10090 (OGM24_10090) | 2136169..2136579 | + | 411 | WP_003426191.1 | sigma-70 family RNA polymerase sigma factor | - |
| OGM24_RS10095 (OGM24_10095) | 2137068..2137220 | + | 153 | WP_003426199.1 | hypothetical protein | - |
| OGM24_RS10100 (OGM24_10100) | 2137321..2142243 | + | 4923 | WP_263729041.1 | Tn3 family transposase TnpR_ISAcsp1 | Transposase |
| OGM24_RS10105 (OGM24_10105) | 2142700..2143047 | + | 348 | WP_003435528.1 | cupin domain-containing protein | - |
| OGM24_RS10110 (OGM24_10110) | 2143197..2144246 | - | 1050 | WP_003423932.1 | ABC transporter substrate-binding protein | - |
| OGM24_RS10115 (OGM24_10115) | 2144632..2145366 | + | 735 | WP_009889846.1 | class I SAM-dependent methyltransferase | - |
| OGM24_RS10120 (OGM24_10120) | 2145508..2145999 | - | 492 | WP_003428667.1 | prolyl-tRNA synthetase associated domain-containing protein | - |
| OGM24_RS10125 (OGM24_10125) | 2146348..2146731 | + | 384 | WP_009889847.1 | PBECR2 nuclease fold domain-containing protein | - |
| OGM24_RS10130 (OGM24_10130) | 2147237..2147620 | + | 384 | WP_003428669.1 | YtxH domain-containing protein | - |
| OGM24_RS10135 (OGM24_10135) | 2147622..2147972 | + | 351 | WP_003428670.1 | hypothetical protein | - |
| OGM24_RS10140 (OGM24_10140) | 2148066..2148524 | - | 459 | WP_003435468.1 | hypothetical protein | - |
| OGM24_RS10145 (OGM24_10145) | 2148569..2149357 | - | 789 | WP_003435466.1 | N-acetylmuramoyl-L-alanine amidase | - |
| OGM24_RS10150 (OGM24_10150) | 2149496..2149933 | - | 438 | WP_009889849.1 | cytidine/deoxycytidylate deaminase family protein | - |
| OGM24_RS10155 (OGM24_10155) | 2150167..2150301 | - | 135 | WP_009889851.1 | hypothetical protein | - |
| OGM24_RS10160 (OGM24_10160) | 2150755..2151264 | + | 510 | WP_009889853.1 | hypothetical protein | VF |
| OGM24_RS10165 (OGM24_10165) | 2151291..2151437 | + | 147 | Protein_1920 | site-specific integrase | - |
| OGM24_RS10170 (OGM24_10170) | 2152175..2152975 | - | 801 | WP_003435446.1 | ABC transporter permease | - |
| OGM24_RS10175 (OGM24_10175) | 2153170..2154768 | - | 1599 | WP_009893325.1 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| OGM24_RS10180 (OGM24_10180) | 2155096..2155272 | + | 177 | WP_009889863.1 | hypothetical protein | - |
| OGM24_RS10185 (OGM24_10185) | 2155446..2156576 | + | 1131 | WP_009893327.1 | 1-propanol dehydrogenase PduQ | - |
| OGM24_RS10190 (OGM24_10190) | 2156817..2157167 | + | 351 | WP_009893329.1 | BMC domain-containing protein | - |
| OGM24_RS10195 (OGM24_10195) | 2157175..2157624 | + | 450 | WP_009889866.1 | EutP/PduV family microcompartment system protein | - |
| OGM24_RS10200 (OGM24_10200) | 2157726..2158301 | + | 576 | WP_003423977.1 | response regulator | - |
| OGM24_RS10205 (OGM24_10205) | 2158294..2159703 | + | 1410 | WP_009889869.1 | histidine kinase N-terminal domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile R20291 | Integrative and Conjugative Element | TA10095 | NC_013316 | 2043677..2141157 | 0 |