MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 97481 bp
Accession: NZ_CP107112 Location: 2057269..2154749 Organism: Clostridioides difficile strain R_cdtRKO8.1 Replicon: chromosome
Accession: NZ_CP107112 Location: 2057269..2154749 Organism: Clostridioides difficile strain R_cdtRKO8.1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OGM25_RS09655 (OGM25_09655) | 2052759..2054300 | + | 1542 | WP_079754356.1 | SdrD B-like domain-containing protein | - |
| OGM25_RS09660 (OGM25_09660) | 2054319..2054600 | + | 282 | WP_009891898.1 | CD1845 family protein | - |
| OGM25_RS09665 (OGM25_09665) | 2054686..2055708 | + | 1023 | WP_009891897.1 | DUF6017 domain-containing protein | - |
| OGM25_RS09670 (OGM25_09670) | 2055710..2056195 | + | 486 | WP_009891896.1 | PcfB family protein | - |
| OGM25_RS09675 (OGM25_09675) | 2056192..2057178 | + | 987 | Protein_1822 | type IV secretory system conjugative DNA transfer family protein | - |
| OGM25_RS09680 (OGM25_09680) | 2057269..2059149 | + | 1881 | WP_012816185.1 | hypothetical protein ; Integrase | Integrase |
| OGM25_RS09685 (OGM25_09685) | 2059176..2059529 | + | 354 | WP_012816186.1 | TnpV protein | - |
| OGM25_RS09690 (OGM25_09690) | 2059546..2059845 | + | 300 | WP_004612693.1 | hypothetical protein | - |
| OGM25_RS09695 (OGM25_09695) | 2059873..2060241 | - | 369 | WP_012816188.1 | helix-turn-helix transcriptional regulator | - |
| OGM25_RS09700 (OGM25_09700) | 2060386..2060574 | + | 189 | WP_007884040.1 | helix-turn-helix domain-containing protein | - |
| OGM25_RS09705 (OGM25_09705) | 2060567..2061259 | + | 693 | WP_024738629.1 | Transcriptional regulatory protein WalR | VF |
| OGM25_RS09710 (OGM25_09710) | 2061265..2062182 | + | 918 | WP_012816190.1 | HAMP domain-containing sensor histidine kinase | - |
| OGM25_RS09715 (OGM25_09715) | 2062317..2063243 | + | 927 | WP_104732837.1 | Bacitracin transport ATP-binding protein BcrA | VF |
| OGM25_RS09720 (OGM25_09720) | 2063236..2064021 | + | 786 | WP_012816192.1 | ABC transporter permease | - |
| OGM25_RS09725 (OGM25_09725) | 2064024..2064803 | + | 780 | WP_002594767.1 | ABC transporter permease | - |
| OGM25_RS09730 (OGM25_09730) | 2064811..2065272 | + | 462 | WP_012816193.1 | hypothetical protein | - |
| OGM25_RS09735 (OGM25_09735) | 2065717..2066130 | + | 414 | WP_012816194.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| OGM25_RS09740 (OGM25_09740) | 2066232..2066684 | + | 453 | WP_012816195.1 | sigma-24 (feci) | - |
| OGM25_RS09745 (OGM25_09745) | 2066695..2067156 | + | 462 | WP_009296689.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| OGM25_RS09750 (OGM25_09750) | 2067185..2067475 | + | 291 | WP_024739841.1 | DUF3847 domain-containing protein | - |
| OGM25_RS09755 (OGM25_09755) | 2067662..2069107 | + | 1446 | WP_104732839.1 | MobQ family relaxase | - |
| OGM25_RS09760 (OGM25_09760) | 2069215..2069505 | - | 291 | WP_002596328.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| OGM25_RS09765 (OGM25_09765) | 2069502..2069780 | - | 279 | WP_005924829.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| OGM25_RS09770 (OGM25_09770) | 2069907..2070305 | + | 399 | WP_012816198.1 | cysteine-rich VLP domain-containing protein | - |
| OGM25_RS09775 (OGM25_09775) | 2070419..2071153 | + | 735 | WP_012816199.1 | phage replisome organizer N-terminal domain-containing protein | - |
| OGM25_RS09780 (OGM25_09780) | 2071150..2072013 | + | 864 | WP_104732840.1 | IS21 family transposase ISBlo1 | Transposase |
| OGM25_RS09785 (OGM25_09785) | 2072057..2072251 | + | 195 | WP_104732841.1 | transposon-encoded TnpW family protein | - |
| OGM25_RS09790 (OGM25_09790) | 2072329..2072694 | + | 366 | WP_104732842.1 | hypothetical protein | - |
| OGM25_RS09795 (OGM25_09795) | 2072789..2073370 | + | 582 | Protein_1846 | TraM recognition domain-containing protein | - |
| OGM25_RS09800 (OGM25_09800) | 2073468..2073845 | + | 378 | WP_009891894.1 | TnpV protein | - |
| OGM25_RS09805 (OGM25_09805) | 2073859..2074140 | + | 282 | WP_009891893.1 | hypothetical protein | - |
| OGM25_RS09810 (OGM25_09810) | 2074262..2075110 | - | 849 | WP_009891891.1 | helix-turn-helix transcriptional regulator | - |
| OGM25_RS09815 (OGM25_09815) | 2075287..2075769 | + | 483 | WP_012816202.1 | hypothetical protein | - |
| OGM25_RS09820 (OGM25_09820) | 2075753..2076058 | + | 306 | WP_074014306.1 | molecular chaperone | - |
| OGM25_RS09825 (OGM25_09825) | 2076486..2077730 | + | 1245 | WP_021422885.1 | hypothetical protein | - |
| OGM25_RS09830 (OGM25_09830) | 2077746..2078432 | + | 687 | WP_074014307.1 | CHC2 zinc finger domain-containing protein | - |
| OGM25_RS09835 (OGM25_09835) | 2078392..2079750 | + | 1359 | WP_009891879.1 | virulence-associated E family protein | - |
| OGM25_RS09840 (OGM25_09840) | 2080018..2080185 | + | 168 | WP_009891878.1 | hypothetical protein | - |
| OGM25_RS09845 (OGM25_09845) | 2080258..2081910 | + | 1653 | WP_012816204.1 | hypothetical protein ; Integrase | Integrase |
| OGM25_RS09850 (OGM25_09850) | 2081958..2082413 | - | 456 | WP_009901261.1 | hypothetical protein | - |
| OGM25_RS09855 (OGM25_09855) | 2082437..2084110 | - | 1674 | WP_009893984.1 | hypothetical protein ; Integrase | Integrase |
| OGM25_RS09860 (OGM25_09860) | 2084188..2084361 | - | 174 | WP_002604472.1 | transposon-encoded TnpW family protein | - |
| OGM25_RS09865 (OGM25_09865) | 2084820..2085062 | - | 243 | WP_002604473.1 | helix-turn-helix domain-containing protein | - |
| OGM25_RS09870 (OGM25_09870) | 2085046..2085483 | - | 438 | WP_002604474.1 | sigma-70 family RNA polymerase sigma factor | - |
| OGM25_RS09875 (OGM25_09875) | 2085957..2086940 | - | 984 | WP_002584956.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| OGM25_RS09880 (OGM25_09880) | 2086957..2087142 | - | 186 | WP_003431289.1 | cysteine-rich KTR domain-containing protein | - |
| OGM25_RS09885 (OGM25_09885) | 2087753..2087914 | + | 162 | Protein_1864 | helix-turn-helix domain-containing protein | - |
| OGM25_RS09890 (OGM25_09890) | 2088185..2088895 | - | 711 | WP_009891854.1 | LytTR family DNA-binding domain-containing protein | - |
| OGM25_RS09895 (OGM25_09895) | 2088900..2089073 | - | 174 | WP_002576203.1 | helix-turn-helix domain-containing protein | - |
| OGM25_RS09900 (OGM25_09900) | 2089215..2089448 | + | 234 | Protein_1867 | conjugal transfer protein TraG | - |
| OGM25_RS09905 (OGM25_09905) | 2089612..2089923 | + | 312 | WP_009891846.1 | single-stranded DNA-binding protein | - |
| OGM25_RS09910 (OGM25_09910) | 2089927..2090079 | + | 153 | Protein_1869 | Maff2 family protein | - |
| OGM25_RS09915 (OGM25_09915) | 2090241..2090513 | + | 273 | WP_009274451.1 | helix-turn-helix domain-containing protein | - |
| OGM25_RS09920 (OGM25_09920) | 2090473..2090850 | + | 378 | WP_009274452.1 | TnpV protein | - |
| OGM25_RS09925 (OGM25_09925) | 2090967..2091401 | + | 435 | WP_009274453.1 | MarR family transcriptional regulator | - |
| OGM25_RS09930 (OGM25_09930) | 2091394..2092695 | + | 1302 | WP_012816206.1 | MATE family efflux transporter | - |
| OGM25_RS09935 (OGM25_09935) | 2092789..2093595 | - | 807 | WP_012816207.1 | helix-turn-helix domain-containing protein | - |
| OGM25_RS09940 (OGM25_09940) | 2094079..2094267 | + | 189 | WP_055058411.1 | hypothetical protein | - |
| OGM25_RS09945 (OGM25_09945) | 2094264..2094605 | + | 342 | WP_003020305.1 | DeoR family transcriptional regulator | - |
| OGM25_RS09950 (OGM25_09950) | 2094598..2094894 | + | 297 | WP_012816208.1 | DUF3847 domain-containing protein | - |
| OGM25_RS09955 (OGM25_09955) | 2095194..2095337 | + | 144 | WP_009274458.1 | hypothetical protein | - |
| OGM25_RS09960 (OGM25_09960) | 2095525..2097105 | + | 1581 | WP_042520383.1 | MobQ family relaxase | - |
| OGM25_RS09965 (OGM25_09965) | 2097171..2097815 | + | 645 | WP_042520382.1 | CHC2 zinc finger domain-containing protein | - |
| OGM25_RS09970 (OGM25_09970) | 2097784..2099121 | + | 1338 | WP_042520381.1 | virulence-associated E family protein | - |
| OGM25_RS09975 (OGM25_09975) | 2099363..2099560 | + | 198 | WP_004612761.1 | hypothetical protein | - |
| OGM25_RS09980 (OGM25_09980) | 2099561..2101231 | + | 1671 | WP_012816213.1 | hypothetical protein ; Integrase | Integrase |
| OGM25_RS09985 (OGM25_09985) | 2101322..2101405 | + | 84 | Protein_1884 | Maff2 family protein | - |
| OGM25_RS09990 (OGM25_09990) | 2101425..2102288 | + | 864 | WP_009893980.1 | CD0415/CD1112 family protein | - |
| OGM25_RS09995 (OGM25_09995) | 2102306..2102566 | + | 261 | WP_009888259.1 | hypothetical protein | - |
| OGM25_RS10000 (OGM25_10000) | 2102570..2102959 | + | 390 | WP_009888260.1 | PrgI family protein | - |
| OGM25_RS10005 (OGM25_10005) | 2102871..2105300 | + | 2430 | WP_009888261.1 | ATP-binding protein | - |
| OGM25_RS10010 (OGM25_10010) | 2105304..2107436 | + | 2133 | WP_009888262.1 | CHAP domain-containing protein | - |
| OGM25_RS10015 (OGM25_10015) | 2107448..2107687 | + | 240 | WP_009888263.1 | hypothetical protein | - |
| OGM25_RS10020 (OGM25_10020) | 2107662..2109203 | + | 1542 | WP_009893977.1 | DUF4366 domain-containing protein | - |
| OGM25_RS10025 (OGM25_10025) | 2109298..2111004 | + | 1707 | WP_009893975.1 | DNA topoisomerase 3 | - |
| OGM25_RS10030 (OGM25_10030) | 2111089..2111892 | + | 804 | WP_004804477.1 | KilA-N domain-containing protein | - |
| OGM25_RS10035 (OGM25_10035) | 2111975..2120704 | + | 8730 | WP_009893973.1 | DEAD/DEAH box helicase family protein | - |
| OGM25_RS10040 (OGM25_10040) | 2120747..2121406 | + | 660 | WP_010826392.1 | hypothetical protein | - |
| OGM25_RS10045 (OGM25_10045) | 2121546..2121776 | + | 231 | WP_009889816.1 | helix-turn-helix transcriptional regulator | - |
| OGM25_RS10050 (OGM25_10050) | 2121979..2123601 | + | 1623 | WP_009889819.1 | AAA family ATPase | - |
| OGM25_RS10055 (OGM25_10055) | 2123598..2124665 | + | 1068 | WP_009889821.1 | UvrD-helicase domain-containing protein | - |
| OGM25_RS10060 (OGM25_10060) | 2124693..2125154 | + | 462 | WP_009889823.1 | hypothetical protein | - |
| OGM25_RS10065 (OGM25_10065) | 2125144..2125950 | + | 807 | WP_009889825.1 | PQQ-like beta-propeller repeat protein | - |
| OGM25_RS10070 (OGM25_10070) | 2125986..2127317 | - | 1332 | WP_009889829.1 | relaxase/mobilization nuclease domain-containing protein | - |
| OGM25_RS10075 (OGM25_10075) | 2127323..2127673 | - | 351 | WP_009889831.1 | plasmid mobilization relaxosome protein MobC | - |
| OGM25_RS10080 (OGM25_10080) | 2128007..2129164 | + | 1158 | WP_009893966.1 | TlpA disulfide reductase family protein | - |
| OGM25_RS10085 (OGM25_10085) | 2129186..2129338 | + | 153 | WP_003426158.1 | CD1871A family CXXC motif-containing protein | - |
| OGM25_RS10090 (OGM25_10090) | 2129331..2130221 | + | 891 | WP_009889834.1 | 4Fe-4S binding protein | - |
| OGM25_RS10095 (OGM25_10095) | 2130240..2131517 | + | 1278 | WP_009889836.1 | ABC transporter permease | - |
| OGM25_RS10100 (OGM25_10100) | 2131527..2132183 | + | 657 | WP_003426165.1 | putative ABC transporter ATP-binding protein | VF |
| OGM25_RS10105 (OGM25_10105) | 2132183..2133559 | + | 1377 | WP_009893965.1 | ABC transporter permease | - |
| OGM25_RS10110 (OGM25_10110) | 2133657..2134310 | + | 654 | WP_009889840.1 | Transcriptional regulatory protein QseB | VF |
| OGM25_RS10115 (OGM25_10115) | 2134307..2135626 | + | 1320 | WP_009889841.1 | HAMP domain-containing sensor histidine kinase | - |
| OGM25_RS10120 (OGM25_10120) | 2136019..2136192 | + | 174 | WP_022621363.1 | hypothetical protein | - |
| OGM25_RS10125 (OGM25_10125) | 2136150..2136560 | + | 411 | WP_003426191.1 | sigma-70 family RNA polymerase sigma factor | - |
| OGM25_RS10130 (OGM25_10130) | 2137049..2137201 | + | 153 | WP_003426199.1 | hypothetical protein | - |
| OGM25_RS10135 (OGM25_10135) | 2137302..2142224 | + | 4923 | WP_263715057.1 | Tn3 family transposase TnpR_ISAcsp1 | Transposase |
| OGM25_RS10140 (OGM25_10140) | 2142681..2143028 | + | 348 | WP_003435528.1 | cupin domain-containing protein | - |
| OGM25_RS10145 (OGM25_10145) | 2143178..2144227 | - | 1050 | WP_003423932.1 | ABC transporter substrate-binding protein | - |
| OGM25_RS10150 (OGM25_10150) | 2144613..2145347 | + | 735 | WP_009889846.1 | class I SAM-dependent methyltransferase | - |
| OGM25_RS10155 (OGM25_10155) | 2145489..2145980 | - | 492 | WP_003428667.1 | prolyl-tRNA synthetase associated domain-containing protein | - |
| OGM25_RS10160 (OGM25_10160) | 2146329..2146712 | + | 384 | WP_009889847.1 | PBECR2 nuclease fold domain-containing protein | - |
| OGM25_RS10165 (OGM25_10165) | 2147218..2147601 | + | 384 | WP_003428669.1 | YtxH domain-containing protein | - |
| OGM25_RS10170 (OGM25_10170) | 2147603..2147953 | + | 351 | WP_003428670.1 | hypothetical protein | - |
| OGM25_RS10175 (OGM25_10175) | 2148047..2148505 | - | 459 | WP_003435468.1 | hypothetical protein | - |
| OGM25_RS10180 (OGM25_10180) | 2148550..2149338 | - | 789 | WP_003435466.1 | N-acetylmuramoyl-L-alanine amidase | - |
| OGM25_RS10185 (OGM25_10185) | 2149477..2149914 | - | 438 | WP_009889849.1 | cytidine/deoxycytidylate deaminase family protein | - |
| OGM25_RS10190 (OGM25_10190) | 2150148..2150282 | - | 135 | WP_009889851.1 | hypothetical protein | - |
| OGM25_RS10195 (OGM25_10195) | 2150736..2151245 | + | 510 | WP_009889853.1 | hypothetical protein | VF |
| OGM25_RS10200 (OGM25_10200) | 2151272..2151418 | + | 147 | Protein_1927 | site-specific integrase | - |
| OGM25_RS10205 (OGM25_10205) | 2152156..2152956 | - | 801 | WP_003435446.1 | ABC transporter permease | - |
| OGM25_RS10210 (OGM25_10210) | 2153151..2154749 | - | 1599 | WP_009893325.1 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| OGM25_RS10215 (OGM25_10215) | 2155077..2155253 | + | 177 | WP_009889863.1 | hypothetical protein | - |
| OGM25_RS10220 (OGM25_10220) | 2155427..2156557 | + | 1131 | WP_009893327.1 | 1-propanol dehydrogenase PduQ | - |
| OGM25_RS10225 (OGM25_10225) | 2156798..2157148 | + | 351 | WP_009893329.1 | BMC domain-containing protein | - |
| OGM25_RS10230 (OGM25_10230) | 2157156..2157605 | + | 450 | WP_009889866.1 | EutP/PduV family microcompartment system protein | - |
| OGM25_RS10235 (OGM25_10235) | 2157707..2158282 | + | 576 | WP_003423977.1 | response regulator | - |
| OGM25_RS10240 (OGM25_10240) | 2158275..2159684 | + | 1410 | WP_009889869.1 | histidine kinase N-terminal domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile R20291 | Integrative and Conjugative Element | TA10095 | NC_013316 | 2043677..2141157 | 0 |