MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 97481 bp
Accession: NZ_CP107109 Location: 2057259..2154739 Organism: Clostridioides difficile strain R_cdtRmut6.1 Replicon: chromosome
Accession: NZ_CP107109 Location: 2057259..2154739 Organism: Clostridioides difficile strain R_cdtRmut6.1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OGM27_RS09630 (OGM27_09630) | 2052749..2054290 | + | 1542 | WP_079754356.1 | SdrD B-like domain-containing protein | - |
| OGM27_RS09635 (OGM27_09635) | 2054309..2054590 | + | 282 | WP_009891898.1 | CD1845 family protein | - |
| OGM27_RS09640 (OGM27_09640) | 2054676..2055698 | + | 1023 | WP_009891897.1 | DUF6017 domain-containing protein | - |
| OGM27_RS09645 (OGM27_09645) | 2055700..2056185 | + | 486 | WP_009891896.1 | PcfB family protein | - |
| OGM27_RS09650 (OGM27_09650) | 2056182..2057168 | + | 987 | Protein_1817 | type IV secretory system conjugative DNA transfer family protein | - |
| OGM27_RS09655 (OGM27_09655) | 2057259..2059139 | + | 1881 | WP_012816185.1 | hypothetical protein ; Integrase | Integrase |
| OGM27_RS09660 (OGM27_09660) | 2059166..2059519 | + | 354 | WP_012816186.1 | TnpV protein | - |
| OGM27_RS09665 (OGM27_09665) | 2059536..2059835 | + | 300 | WP_004612693.1 | hypothetical protein | - |
| OGM27_RS09670 (OGM27_09670) | 2059863..2060231 | - | 369 | WP_012816188.1 | helix-turn-helix transcriptional regulator | - |
| OGM27_RS09675 (OGM27_09675) | 2060376..2060564 | + | 189 | WP_007884040.1 | helix-turn-helix domain-containing protein | - |
| OGM27_RS09680 (OGM27_09680) | 2060557..2061249 | + | 693 | WP_024738629.1 | Transcriptional regulatory protein WalR | VF |
| OGM27_RS09685 (OGM27_09685) | 2061255..2062172 | + | 918 | WP_012816190.1 | HAMP domain-containing sensor histidine kinase | - |
| OGM27_RS09690 (OGM27_09690) | 2062307..2063233 | + | 927 | WP_104732837.1 | Bacitracin transport ATP-binding protein BcrA | VF |
| OGM27_RS09695 (OGM27_09695) | 2063226..2064011 | + | 786 | WP_012816192.1 | ABC transporter permease | - |
| OGM27_RS09700 (OGM27_09700) | 2064014..2064793 | + | 780 | WP_002594767.1 | ABC transporter permease | - |
| OGM27_RS09705 (OGM27_09705) | 2064801..2065262 | + | 462 | WP_012816193.1 | hypothetical protein | - |
| OGM27_RS09710 (OGM27_09710) | 2065707..2066120 | + | 414 | WP_012816194.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| OGM27_RS09715 (OGM27_09715) | 2066222..2066674 | + | 453 | WP_012816195.1 | sigma-24 (feci) | - |
| OGM27_RS09720 (OGM27_09720) | 2066685..2067146 | + | 462 | WP_009296689.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| OGM27_RS09725 (OGM27_09725) | 2067175..2067465 | + | 291 | WP_024739841.1 | DUF3847 domain-containing protein | - |
| OGM27_RS09730 (OGM27_09730) | 2067652..2069097 | + | 1446 | WP_104732839.1 | MobQ family relaxase | - |
| OGM27_RS09735 (OGM27_09735) | 2069205..2069495 | - | 291 | WP_002596328.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| OGM27_RS09740 (OGM27_09740) | 2069492..2069770 | - | 279 | WP_005924829.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| OGM27_RS09745 (OGM27_09745) | 2069897..2070295 | + | 399 | WP_012816198.1 | cysteine-rich VLP domain-containing protein | - |
| OGM27_RS09750 (OGM27_09750) | 2070409..2071143 | + | 735 | WP_012816199.1 | phage replisome organizer N-terminal domain-containing protein | - |
| OGM27_RS09755 (OGM27_09755) | 2071140..2072003 | + | 864 | WP_104732840.1 | IS21 family transposase ISBlo1 | Transposase |
| OGM27_RS09760 (OGM27_09760) | 2072047..2072241 | + | 195 | WP_104732841.1 | transposon-encoded TnpW family protein | - |
| OGM27_RS09765 (OGM27_09765) | 2072319..2072684 | + | 366 | WP_104732842.1 | hypothetical protein | - |
| OGM27_RS09770 (OGM27_09770) | 2072779..2073360 | + | 582 | Protein_1841 | TraM recognition domain-containing protein | - |
| OGM27_RS09775 (OGM27_09775) | 2073458..2073835 | + | 378 | WP_009891894.1 | TnpV protein | - |
| OGM27_RS09780 (OGM27_09780) | 2073849..2074130 | + | 282 | WP_009891893.1 | hypothetical protein | - |
| OGM27_RS09785 (OGM27_09785) | 2074252..2075100 | - | 849 | WP_009891891.1 | helix-turn-helix transcriptional regulator | - |
| OGM27_RS09790 (OGM27_09790) | 2075466..2075759 | + | 294 | WP_021407349.1 | hypothetical protein | - |
| OGM27_RS09795 (OGM27_09795) | 2075743..2076048 | + | 306 | WP_074014306.1 | molecular chaperone | - |
| OGM27_RS09800 (OGM27_09800) | 2076476..2077720 | + | 1245 | WP_021422885.1 | hypothetical protein | - |
| OGM27_RS09805 (OGM27_09805) | 2077736..2078422 | + | 687 | WP_074014307.1 | CHC2 zinc finger domain-containing protein | - |
| OGM27_RS09810 (OGM27_09810) | 2078382..2079740 | + | 1359 | WP_009891879.1 | virulence-associated E family protein | - |
| OGM27_RS09815 (OGM27_09815) | 2080008..2080175 | + | 168 | WP_009891878.1 | hypothetical protein | - |
| OGM27_RS09820 (OGM27_09820) | 2080248..2081900 | + | 1653 | WP_012816204.1 | hypothetical protein ; Integrase | Integrase |
| OGM27_RS09825 (OGM27_09825) | 2081948..2082403 | - | 456 | WP_009901261.1 | hypothetical protein | - |
| OGM27_RS09830 (OGM27_09830) | 2082427..2084100 | - | 1674 | WP_009893984.1 | hypothetical protein ; Integrase | Integrase |
| OGM27_RS09835 (OGM27_09835) | 2084178..2084351 | - | 174 | WP_002604472.1 | transposon-encoded TnpW family protein | - |
| OGM27_RS09840 (OGM27_09840) | 2084810..2085052 | - | 243 | WP_002604473.1 | helix-turn-helix domain-containing protein | - |
| OGM27_RS09845 (OGM27_09845) | 2085036..2085473 | - | 438 | WP_002604474.1 | sigma-70 family RNA polymerase sigma factor | - |
| OGM27_RS09850 (OGM27_09850) | 2085947..2086930 | - | 984 | WP_002584956.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| OGM27_RS09855 (OGM27_09855) | 2086947..2087132 | - | 186 | WP_003431289.1 | cysteine-rich KTR domain-containing protein | - |
| OGM27_RS09860 (OGM27_09860) | 2087743..2087904 | + | 162 | Protein_1859 | helix-turn-helix domain-containing protein | - |
| OGM27_RS09865 (OGM27_09865) | 2088175..2088885 | - | 711 | WP_009891854.1 | LytTR family DNA-binding domain-containing protein | - |
| OGM27_RS09870 (OGM27_09870) | 2088890..2089063 | - | 174 | WP_002576203.1 | helix-turn-helix domain-containing protein | - |
| OGM27_RS09875 (OGM27_09875) | 2089205..2089438 | + | 234 | Protein_1862 | conjugal transfer protein TraG | - |
| OGM27_RS09880 (OGM27_09880) | 2089602..2089913 | + | 312 | WP_009891846.1 | single-stranded DNA-binding protein | - |
| OGM27_RS09885 (OGM27_09885) | 2089917..2090069 | + | 153 | Protein_1864 | Maff2 family protein | - |
| OGM27_RS09890 (OGM27_09890) | 2090231..2090503 | + | 273 | WP_009274451.1 | helix-turn-helix domain-containing protein | - |
| OGM27_RS09895 (OGM27_09895) | 2090463..2090840 | + | 378 | WP_009274452.1 | TnpV protein | - |
| OGM27_RS09900 (OGM27_09900) | 2090957..2091391 | + | 435 | WP_009274453.1 | MarR family transcriptional regulator | - |
| OGM27_RS09905 (OGM27_09905) | 2091384..2092685 | + | 1302 | WP_012816206.1 | MATE family efflux transporter | - |
| OGM27_RS09910 (OGM27_09910) | 2092779..2093585 | - | 807 | WP_012816207.1 | helix-turn-helix domain-containing protein | - |
| OGM27_RS09915 (OGM27_09915) | 2094069..2094257 | + | 189 | WP_055058411.1 | hypothetical protein | - |
| OGM27_RS09920 (OGM27_09920) | 2094254..2094595 | + | 342 | WP_003020305.1 | DeoR family transcriptional regulator | - |
| OGM27_RS09925 (OGM27_09925) | 2094588..2094884 | + | 297 | WP_012816208.1 | DUF3847 domain-containing protein | - |
| OGM27_RS09930 (OGM27_09930) | 2095184..2095327 | + | 144 | WP_009274458.1 | hypothetical protein | - |
| OGM27_RS09935 (OGM27_09935) | 2095515..2097095 | + | 1581 | WP_042520383.1 | MobQ family relaxase | - |
| OGM27_RS09940 (OGM27_09940) | 2097161..2097805 | + | 645 | WP_042520382.1 | CHC2 zinc finger domain-containing protein | - |
| OGM27_RS09945 (OGM27_09945) | 2097774..2099111 | + | 1338 | WP_042520381.1 | virulence-associated E family protein | - |
| OGM27_RS09950 (OGM27_09950) | 2099353..2099550 | + | 198 | WP_004612761.1 | hypothetical protein | - |
| OGM27_RS09955 (OGM27_09955) | 2099551..2101221 | + | 1671 | WP_012816213.1 | hypothetical protein ; Integrase | Integrase |
| OGM27_RS09960 (OGM27_09960) | 2101312..2101395 | + | 84 | Protein_1879 | Maff2 family protein | - |
| OGM27_RS09965 (OGM27_09965) | 2101415..2102278 | + | 864 | WP_009893980.1 | CD0415/CD1112 family protein | - |
| OGM27_RS09970 (OGM27_09970) | 2102296..2102556 | + | 261 | WP_009888259.1 | hypothetical protein | - |
| OGM27_RS09975 (OGM27_09975) | 2102560..2102949 | + | 390 | WP_009888260.1 | PrgI family protein | - |
| OGM27_RS09980 (OGM27_09980) | 2102861..2105290 | + | 2430 | WP_009888261.1 | ATP-binding protein | - |
| OGM27_RS09985 (OGM27_09985) | 2105294..2107426 | + | 2133 | WP_009888262.1 | CHAP domain-containing protein | - |
| OGM27_RS09990 (OGM27_09990) | 2107438..2107677 | + | 240 | WP_009888263.1 | hypothetical protein | - |
| OGM27_RS09995 (OGM27_09995) | 2107652..2109193 | + | 1542 | WP_009893977.1 | DUF4366 domain-containing protein | - |
| OGM27_RS10000 (OGM27_10000) | 2109288..2110994 | + | 1707 | WP_009893975.1 | DNA topoisomerase 3 | - |
| OGM27_RS10005 (OGM27_10005) | 2111079..2111882 | + | 804 | WP_004804477.1 | KilA-N domain-containing protein | - |
| OGM27_RS10010 (OGM27_10010) | 2111965..2120694 | + | 8730 | WP_009893973.1 | DEAD/DEAH box helicase family protein | - |
| OGM27_RS10015 (OGM27_10015) | 2120737..2121396 | + | 660 | WP_010826392.1 | hypothetical protein | - |
| OGM27_RS10020 (OGM27_10020) | 2121536..2121766 | + | 231 | WP_009889816.1 | helix-turn-helix transcriptional regulator | - |
| OGM27_RS10025 (OGM27_10025) | 2121969..2123591 | + | 1623 | WP_009889819.1 | AAA family ATPase | - |
| OGM27_RS10030 (OGM27_10030) | 2123588..2124655 | + | 1068 | WP_009889821.1 | UvrD-helicase domain-containing protein | - |
| OGM27_RS10035 (OGM27_10035) | 2124683..2125144 | + | 462 | WP_009889823.1 | hypothetical protein | - |
| OGM27_RS10040 (OGM27_10040) | 2125134..2125940 | + | 807 | WP_009889825.1 | PQQ-like beta-propeller repeat protein | - |
| OGM27_RS10045 (OGM27_10045) | 2125976..2127307 | - | 1332 | WP_009889829.1 | relaxase/mobilization nuclease domain-containing protein | - |
| OGM27_RS10050 (OGM27_10050) | 2127313..2127663 | - | 351 | WP_009889831.1 | plasmid mobilization relaxosome protein MobC | - |
| OGM27_RS10055 (OGM27_10055) | 2127997..2129154 | + | 1158 | WP_009893966.1 | TlpA disulfide reductase family protein | - |
| OGM27_RS10060 (OGM27_10060) | 2129176..2129328 | + | 153 | WP_003426158.1 | CD1871A family CXXC motif-containing protein | - |
| OGM27_RS10065 (OGM27_10065) | 2129321..2130211 | + | 891 | WP_009889834.1 | 4Fe-4S binding protein | - |
| OGM27_RS10070 (OGM27_10070) | 2130230..2131507 | + | 1278 | WP_009889836.1 | ABC transporter permease | - |
| OGM27_RS10075 (OGM27_10075) | 2131517..2132173 | + | 657 | WP_003426165.1 | putative ABC transporter ATP-binding protein | VF |
| OGM27_RS10080 (OGM27_10080) | 2132173..2133549 | + | 1377 | WP_009893965.1 | ABC transporter permease | - |
| OGM27_RS10085 (OGM27_10085) | 2133647..2134300 | + | 654 | WP_009889840.1 | Transcriptional regulatory protein QseB | VF |
| OGM27_RS10090 (OGM27_10090) | 2134297..2135616 | + | 1320 | WP_009889841.1 | HAMP domain-containing sensor histidine kinase | - |
| OGM27_RS10095 (OGM27_10095) | 2136140..2136550 | + | 411 | WP_003426191.1 | sigma-70 family RNA polymerase sigma factor | - |
| OGM27_RS10100 (OGM27_10100) | 2137039..2137191 | + | 153 | WP_003426199.1 | hypothetical protein | - |
| OGM27_RS10105 (OGM27_10105) | 2137292..2142214 | + | 4923 | WP_263732676.1 | Tn3 family transposase TnpR_ISAcsp1 | Transposase |
| OGM27_RS10110 (OGM27_10110) | 2142671..2143018 | + | 348 | WP_003435528.1 | cupin domain-containing protein | - |
| OGM27_RS10115 (OGM27_10115) | 2143168..2144217 | - | 1050 | WP_003423932.1 | ABC transporter substrate-binding protein | - |
| OGM27_RS10120 (OGM27_10120) | 2144603..2145337 | + | 735 | WP_009889846.1 | class I SAM-dependent methyltransferase | - |
| OGM27_RS10125 (OGM27_10125) | 2145479..2145970 | - | 492 | WP_003428667.1 | prolyl-tRNA synthetase associated domain-containing protein | - |
| OGM27_RS10130 (OGM27_10130) | 2146319..2146702 | + | 384 | WP_009889847.1 | PBECR2 nuclease fold domain-containing protein | - |
| OGM27_RS10135 (OGM27_10135) | 2147208..2147591 | + | 384 | WP_003428669.1 | YtxH domain-containing protein | - |
| OGM27_RS10140 (OGM27_10140) | 2147593..2147943 | + | 351 | WP_003428670.1 | hypothetical protein | - |
| OGM27_RS10145 (OGM27_10145) | 2148037..2148495 | - | 459 | WP_003435468.1 | hypothetical protein | - |
| OGM27_RS10150 (OGM27_10150) | 2148540..2149328 | - | 789 | WP_003435466.1 | N-acetylmuramoyl-L-alanine amidase | - |
| OGM27_RS10155 (OGM27_10155) | 2149467..2149904 | - | 438 | WP_009889849.1 | cytidine/deoxycytidylate deaminase family protein | - |
| OGM27_RS10160 (OGM27_10160) | 2150138..2150272 | - | 135 | WP_009889851.1 | hypothetical protein | - |
| OGM27_RS10165 (OGM27_10165) | 2150726..2151235 | + | 510 | WP_009889853.1 | hypothetical protein | VF |
| OGM27_RS10170 (OGM27_10170) | 2151262..2151408 | + | 147 | Protein_1921 | site-specific integrase | - |
| OGM27_RS10175 (OGM27_10175) | 2152146..2152946 | - | 801 | WP_003435446.1 | ABC transporter permease | - |
| OGM27_RS10180 (OGM27_10180) | 2153141..2154739 | - | 1599 | WP_009893325.1 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| OGM27_RS10185 (OGM27_10185) | 2155067..2155243 | + | 177 | WP_009889863.1 | hypothetical protein | - |
| OGM27_RS10190 (OGM27_10190) | 2155417..2156547 | + | 1131 | WP_009893327.1 | 1-propanol dehydrogenase PduQ | - |
| OGM27_RS10195 (OGM27_10195) | 2156788..2157138 | + | 351 | WP_009893329.1 | BMC domain-containing protein | - |
| OGM27_RS10200 (OGM27_10200) | 2157146..2157595 | + | 450 | WP_009889866.1 | EutP/PduV family microcompartment system protein | - |
| OGM27_RS10205 (OGM27_10205) | 2157697..2158272 | + | 576 | WP_003423977.1 | response regulator | - |
| OGM27_RS10210 (OGM27_10210) | 2158265..2159674 | + | 1410 | WP_009889869.1 | histidine kinase N-terminal domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile R20291 | Integrative and Conjugative Element | TA10095 | NC_013316 | 2043677..2141157 | 0 |