MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 97481 bp
Accession: NZ_CP107108 Location: 2085392..2182872 Organism: Clostridioides difficile strain R_phiCD75-3 Replicon: chromosome
Accession: NZ_CP107108 Location: 2085392..2182872 Organism: Clostridioides difficile strain R_phiCD75-3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OGM26_RS09875 (OGM26_09875) | 2080882..2082423 | + | 1542 | WP_079754356.1 | SdrD B-like domain-containing protein | - |
| OGM26_RS09880 (OGM26_09880) | 2082442..2082723 | + | 282 | WP_009891898.1 | CD1845 family protein | - |
| OGM26_RS09885 (OGM26_09885) | 2082809..2083831 | + | 1023 | WP_009891897.1 | DUF6017 domain-containing protein | - |
| OGM26_RS09890 (OGM26_09890) | 2083833..2084318 | + | 486 | WP_009891896.1 | PcfB family protein | - |
| OGM26_RS09895 (OGM26_09895) | 2084315..2085301 | + | 987 | Protein_1866 | type IV secretory system conjugative DNA transfer family protein | - |
| OGM26_RS09900 (OGM26_09900) | 2085392..2087272 | + | 1881 | WP_012816185.1 | hypothetical protein ; Integrase | Integrase |
| OGM26_RS09905 (OGM26_09905) | 2087299..2087652 | + | 354 | WP_012816186.1 | TnpV protein | - |
| OGM26_RS09910 (OGM26_09910) | 2087669..2087968 | + | 300 | WP_004612693.1 | hypothetical protein | - |
| OGM26_RS09915 (OGM26_09915) | 2087996..2088364 | - | 369 | WP_012816188.1 | helix-turn-helix transcriptional regulator | - |
| OGM26_RS09920 (OGM26_09920) | 2088509..2088697 | + | 189 | WP_007884040.1 | helix-turn-helix domain-containing protein | - |
| OGM26_RS09925 (OGM26_09925) | 2088690..2089382 | + | 693 | WP_024738629.1 | Transcriptional regulatory protein WalR | VF |
| OGM26_RS09930 (OGM26_09930) | 2089388..2090305 | + | 918 | WP_012816190.1 | HAMP domain-containing sensor histidine kinase | - |
| OGM26_RS09935 (OGM26_09935) | 2090440..2091366 | + | 927 | WP_104732837.1 | Bacitracin transport ATP-binding protein BcrA | VF |
| OGM26_RS09940 (OGM26_09940) | 2091359..2092144 | + | 786 | WP_012816192.1 | ABC transporter permease | - |
| OGM26_RS09945 (OGM26_09945) | 2092147..2092926 | + | 780 | WP_002594767.1 | ABC transporter permease | - |
| OGM26_RS09950 (OGM26_09950) | 2092934..2093395 | + | 462 | WP_012816193.1 | hypothetical protein | - |
| OGM26_RS09955 (OGM26_09955) | 2093840..2094253 | + | 414 | WP_012816194.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| OGM26_RS09960 (OGM26_09960) | 2094355..2094807 | + | 453 | WP_012816195.1 | sigma-24 (feci) | - |
| OGM26_RS09965 (OGM26_09965) | 2094818..2095279 | + | 462 | WP_009296689.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| OGM26_RS09970 (OGM26_09970) | 2095308..2095598 | + | 291 | WP_024739841.1 | DUF3847 domain-containing protein | - |
| OGM26_RS09975 (OGM26_09975) | 2095785..2097230 | + | 1446 | WP_104732839.1 | MobQ family relaxase | - |
| OGM26_RS09980 (OGM26_09980) | 2097338..2097628 | - | 291 | WP_002596328.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| OGM26_RS09985 (OGM26_09985) | 2097625..2097903 | - | 279 | WP_005924829.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| OGM26_RS09990 (OGM26_09990) | 2098030..2098428 | + | 399 | WP_012816198.1 | cysteine-rich VLP domain-containing protein | - |
| OGM26_RS09995 (OGM26_09995) | 2098542..2099276 | + | 735 | WP_012816199.1 | phage replisome organizer N-terminal domain-containing protein | - |
| OGM26_RS10000 (OGM26_10000) | 2099273..2100136 | + | 864 | WP_104732840.1 | IS21 family transposase ISBlo1 | Transposase |
| OGM26_RS10005 (OGM26_10005) | 2100180..2100374 | + | 195 | WP_104732841.1 | transposon-encoded TnpW family protein | - |
| OGM26_RS10010 (OGM26_10010) | 2100452..2100817 | + | 366 | WP_104732842.1 | hypothetical protein | - |
| OGM26_RS10015 (OGM26_10015) | 2100912..2101493 | + | 582 | Protein_1890 | TraM recognition domain-containing protein | - |
| OGM26_RS10020 (OGM26_10020) | 2101591..2101968 | + | 378 | WP_009891894.1 | TnpV protein | - |
| OGM26_RS10025 (OGM26_10025) | 2101982..2102263 | + | 282 | WP_009891893.1 | hypothetical protein | - |
| OGM26_RS10030 (OGM26_10030) | 2102385..2103233 | - | 849 | WP_009891891.1 | helix-turn-helix transcriptional regulator | - |
| OGM26_RS10035 (OGM26_10035) | 2103410..2103892 | + | 483 | WP_012816202.1 | hypothetical protein | - |
| OGM26_RS10040 (OGM26_10040) | 2103876..2104181 | + | 306 | WP_074014306.1 | molecular chaperone | - |
| OGM26_RS10045 (OGM26_10045) | 2104609..2105853 | + | 1245 | WP_021422885.1 | hypothetical protein | - |
| OGM26_RS10050 (OGM26_10050) | 2105869..2106555 | + | 687 | WP_074014307.1 | CHC2 zinc finger domain-containing protein | - |
| OGM26_RS10055 (OGM26_10055) | 2106515..2107873 | + | 1359 | WP_009891879.1 | virulence-associated E family protein | - |
| OGM26_RS10060 (OGM26_10060) | 2108141..2108308 | + | 168 | WP_009891878.1 | hypothetical protein | - |
| OGM26_RS10065 (OGM26_10065) | 2108381..2110033 | + | 1653 | WP_012816204.1 | hypothetical protein ; Integrase | Integrase |
| OGM26_RS10070 (OGM26_10070) | 2110081..2110536 | - | 456 | WP_009901261.1 | hypothetical protein | - |
| OGM26_RS10075 (OGM26_10075) | 2110560..2112233 | - | 1674 | WP_009893984.1 | hypothetical protein ; Integrase | Integrase |
| OGM26_RS10080 (OGM26_10080) | 2112311..2112484 | - | 174 | WP_002604472.1 | transposon-encoded TnpW family protein | - |
| OGM26_RS10085 (OGM26_10085) | 2112943..2113185 | - | 243 | WP_002604473.1 | helix-turn-helix domain-containing protein | - |
| OGM26_RS10090 (OGM26_10090) | 2113169..2113606 | - | 438 | WP_002604474.1 | sigma-70 family RNA polymerase sigma factor | - |
| OGM26_RS10095 (OGM26_10095) | 2114080..2115063 | - | 984 | WP_002584956.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| OGM26_RS10100 (OGM26_10100) | 2115080..2115265 | - | 186 | WP_003431289.1 | cysteine-rich KTR domain-containing protein | - |
| OGM26_RS10105 (OGM26_10105) | 2115876..2116037 | + | 162 | Protein_1908 | helix-turn-helix domain-containing protein | - |
| OGM26_RS10110 (OGM26_10110) | 2116308..2117018 | - | 711 | WP_009891854.1 | LytTR family DNA-binding domain-containing protein | - |
| OGM26_RS10115 (OGM26_10115) | 2117023..2117196 | - | 174 | WP_002576203.1 | helix-turn-helix domain-containing protein | - |
| OGM26_RS10120 (OGM26_10120) | 2117338..2117571 | + | 234 | Protein_1911 | conjugal transfer protein TraG | - |
| OGM26_RS10125 (OGM26_10125) | 2117735..2118046 | + | 312 | WP_009891846.1 | single-stranded DNA-binding protein | - |
| OGM26_RS10130 (OGM26_10130) | 2118050..2118202 | + | 153 | Protein_1913 | Maff2 family protein | - |
| OGM26_RS10135 (OGM26_10135) | 2118364..2118636 | + | 273 | WP_009274451.1 | helix-turn-helix domain-containing protein | - |
| OGM26_RS10140 (OGM26_10140) | 2118596..2118973 | + | 378 | WP_009274452.1 | TnpV protein | - |
| OGM26_RS10145 (OGM26_10145) | 2119090..2119524 | + | 435 | WP_009274453.1 | MarR family transcriptional regulator | - |
| OGM26_RS10150 (OGM26_10150) | 2119517..2120818 | + | 1302 | WP_012816206.1 | MATE family efflux transporter | - |
| OGM26_RS10155 (OGM26_10155) | 2120912..2121718 | - | 807 | WP_012816207.1 | helix-turn-helix domain-containing protein | - |
| OGM26_RS10160 (OGM26_10160) | 2122202..2122390 | + | 189 | WP_055058411.1 | hypothetical protein | - |
| OGM26_RS10165 (OGM26_10165) | 2122387..2122728 | + | 342 | WP_003020305.1 | DeoR family transcriptional regulator | - |
| OGM26_RS10170 (OGM26_10170) | 2122721..2123017 | + | 297 | WP_012816208.1 | DUF3847 domain-containing protein | - |
| OGM26_RS10175 (OGM26_10175) | 2123317..2123460 | + | 144 | WP_009274458.1 | hypothetical protein | - |
| OGM26_RS10180 (OGM26_10180) | 2123648..2125228 | + | 1581 | WP_042520383.1 | MobQ family relaxase | - |
| OGM26_RS10185 (OGM26_10185) | 2125294..2125938 | + | 645 | WP_042520382.1 | CHC2 zinc finger domain-containing protein | - |
| OGM26_RS10190 (OGM26_10190) | 2125907..2127244 | + | 1338 | WP_042520381.1 | virulence-associated E family protein | - |
| OGM26_RS10195 (OGM26_10195) | 2127486..2127683 | + | 198 | WP_004612761.1 | hypothetical protein | - |
| OGM26_RS10200 (OGM26_10200) | 2127684..2129354 | + | 1671 | WP_012816213.1 | hypothetical protein ; Integrase | Integrase |
| OGM26_RS10205 (OGM26_10205) | 2129445..2129528 | + | 84 | Protein_1928 | Maff2 family protein | - |
| OGM26_RS10210 (OGM26_10210) | 2129548..2130411 | + | 864 | WP_009893980.1 | CD0415/CD1112 family protein | - |
| OGM26_RS10215 (OGM26_10215) | 2130429..2130689 | + | 261 | WP_009888259.1 | hypothetical protein | - |
| OGM26_RS10220 (OGM26_10220) | 2130693..2131082 | + | 390 | WP_009888260.1 | PrgI family protein | - |
| OGM26_RS10225 (OGM26_10225) | 2130994..2133423 | + | 2430 | WP_009888261.1 | ATP-binding protein | - |
| OGM26_RS10230 (OGM26_10230) | 2133427..2135559 | + | 2133 | WP_009888262.1 | CHAP domain-containing protein | - |
| OGM26_RS10235 (OGM26_10235) | 2135571..2135810 | + | 240 | WP_009888263.1 | hypothetical protein | - |
| OGM26_RS10240 (OGM26_10240) | 2135785..2137326 | + | 1542 | WP_009893977.1 | DUF4366 domain-containing protein | - |
| OGM26_RS10245 (OGM26_10245) | 2137421..2139127 | + | 1707 | WP_009893975.1 | DNA topoisomerase 3 | - |
| OGM26_RS10250 (OGM26_10250) | 2139212..2140015 | + | 804 | WP_004804477.1 | KilA-N domain-containing protein | - |
| OGM26_RS10255 (OGM26_10255) | 2140098..2148827 | + | 8730 | WP_009893973.1 | DEAD/DEAH box helicase family protein | - |
| OGM26_RS10260 (OGM26_10260) | 2148870..2149529 | + | 660 | WP_010826392.1 | hypothetical protein | - |
| OGM26_RS10265 (OGM26_10265) | 2149669..2149899 | + | 231 | WP_009889816.1 | helix-turn-helix transcriptional regulator | - |
| OGM26_RS10270 (OGM26_10270) | 2150102..2151724 | + | 1623 | WP_009889819.1 | AAA family ATPase | - |
| OGM26_RS10275 (OGM26_10275) | 2151721..2152788 | + | 1068 | WP_009889821.1 | UvrD-helicase domain-containing protein | - |
| OGM26_RS10280 (OGM26_10280) | 2152816..2153277 | + | 462 | WP_009889823.1 | hypothetical protein | - |
| OGM26_RS10285 (OGM26_10285) | 2153267..2154073 | + | 807 | WP_009889825.1 | PQQ-like beta-propeller repeat protein | - |
| OGM26_RS10290 (OGM26_10290) | 2154109..2155440 | - | 1332 | WP_009889829.1 | relaxase/mobilization nuclease domain-containing protein | - |
| OGM26_RS10295 (OGM26_10295) | 2155446..2155796 | - | 351 | WP_009889831.1 | plasmid mobilization relaxosome protein MobC | - |
| OGM26_RS10300 (OGM26_10300) | 2156130..2157287 | + | 1158 | WP_009893966.1 | TlpA disulfide reductase family protein | - |
| OGM26_RS10305 (OGM26_10305) | 2157309..2157461 | + | 153 | WP_003426158.1 | CD1871A family CXXC motif-containing protein | - |
| OGM26_RS10310 (OGM26_10310) | 2157454..2158344 | + | 891 | WP_009889834.1 | 4Fe-4S binding protein | - |
| OGM26_RS10315 (OGM26_10315) | 2158363..2159640 | + | 1278 | WP_009889836.1 | ABC transporter permease | - |
| OGM26_RS10320 (OGM26_10320) | 2159650..2160306 | + | 657 | WP_003426165.1 | putative ABC transporter ATP-binding protein | VF |
| OGM26_RS10325 (OGM26_10325) | 2160306..2161682 | + | 1377 | WP_009893965.1 | ABC transporter permease | - |
| OGM26_RS10330 (OGM26_10330) | 2161780..2162433 | + | 654 | WP_009889840.1 | Transcriptional regulatory protein QseB | VF |
| OGM26_RS10335 (OGM26_10335) | 2162430..2163749 | + | 1320 | WP_009889841.1 | HAMP domain-containing sensor histidine kinase | - |
| OGM26_RS10340 (OGM26_10340) | 2164273..2164683 | + | 411 | WP_003426191.1 | sigma-70 family RNA polymerase sigma factor | - |
| OGM26_RS10345 (OGM26_10345) | 2165172..2165324 | + | 153 | WP_003426199.1 | hypothetical protein | - |
| OGM26_RS10350 (OGM26_10350) | 2165425..2170347 | + | 4923 | WP_263715057.1 | Tn3 family transposase TnpR_ISAcsp1 | Transposase |
| OGM26_RS10355 (OGM26_10355) | 2170804..2171151 | + | 348 | WP_003435528.1 | cupin domain-containing protein | - |
| OGM26_RS10360 (OGM26_10360) | 2171301..2172350 | - | 1050 | WP_003423932.1 | ABC transporter substrate-binding protein | - |
| OGM26_RS10365 (OGM26_10365) | 2172736..2173470 | + | 735 | WP_009889846.1 | class I SAM-dependent methyltransferase | - |
| OGM26_RS10370 (OGM26_10370) | 2173612..2174103 | - | 492 | WP_003428667.1 | prolyl-tRNA synthetase associated domain-containing protein | - |
| OGM26_RS10375 (OGM26_10375) | 2174452..2174835 | + | 384 | WP_009889847.1 | PBECR2 nuclease fold domain-containing protein | - |
| OGM26_RS10380 (OGM26_10380) | 2175341..2175724 | + | 384 | WP_003428669.1 | YtxH domain-containing protein | - |
| OGM26_RS10385 (OGM26_10385) | 2175726..2176076 | + | 351 | WP_003428670.1 | hypothetical protein | - |
| OGM26_RS10390 (OGM26_10390) | 2176170..2176628 | - | 459 | WP_003435468.1 | hypothetical protein | - |
| OGM26_RS10395 (OGM26_10395) | 2176673..2177461 | - | 789 | WP_003435466.1 | N-acetylmuramoyl-L-alanine amidase | - |
| OGM26_RS10400 (OGM26_10400) | 2177600..2178037 | - | 438 | WP_009889849.1 | cytidine/deoxycytidylate deaminase family protein | - |
| OGM26_RS10405 (OGM26_10405) | 2178271..2178405 | - | 135 | WP_009889851.1 | hypothetical protein | - |
| OGM26_RS10410 (OGM26_10410) | 2178859..2179368 | + | 510 | WP_009889853.1 | hypothetical protein | VF |
| OGM26_RS10415 (OGM26_10415) | 2179395..2179541 | + | 147 | Protein_1970 | site-specific integrase | - |
| OGM26_RS10420 (OGM26_10420) | 2180279..2181079 | - | 801 | WP_003435446.1 | ABC transporter permease | - |
| OGM26_RS10425 (OGM26_10425) | 2181274..2182872 | - | 1599 | WP_009893325.1 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| OGM26_RS10430 (OGM26_10430) | 2183200..2183376 | + | 177 | WP_009889863.1 | hypothetical protein | - |
| OGM26_RS10435 (OGM26_10435) | 2183550..2184680 | + | 1131 | WP_009893327.1 | 1-propanol dehydrogenase PduQ | - |
| OGM26_RS10440 (OGM26_10440) | 2184921..2185271 | + | 351 | WP_009893329.1 | BMC domain-containing protein | - |
| OGM26_RS10445 (OGM26_10445) | 2185279..2185728 | + | 450 | WP_009889866.1 | EutP/PduV family microcompartment system protein | - |
| OGM26_RS10450 (OGM26_10450) | 2185830..2186405 | + | 576 | WP_003423977.1 | response regulator | - |
| OGM26_RS10455 (OGM26_10455) | 2186398..2187807 | + | 1410 | WP_009889869.1 | histidine kinase N-terminal domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Clostridium difficile R20291 | Integrative and Conjugative Element | TA10095 | NC_013316 | 2043677..2141157 | 0 |