MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 128305 bp
Accession: NZ_CP107064 Location: 6037524..6165828 Organism: Pseudomonas aeruginosa strain PALA20 Replicon: chromosome
Accession: NZ_CP107064 Location: 6037524..6165828 Organism: Pseudomonas aeruginosa strain PALA20 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PALA20_RS28335 | 6033003..6033296 | - | 294 | WP_009459591.1 | helix-turn-helix transcriptional regulator | - |
| PALA20_RS28340 (PALA20_05601) | 6033416..6034069 | + | 654 | WP_023657195.1 | substrate-binding domain-containing protein | - |
| PALA20_RS28345 (PALA20_05602) | 6034188..6035156 | + | 969 | WP_023657194.1 | Dyp-type peroxidase | - |
| PALA20_RS28350 (PALA20_05603) | 6035194..6037137 | - | 1944 | WP_033894816.1 | integrase arm-type DNA-binding domain-containing protein | - |
| PALA20_RS28360 (PALA20_05605) | 6037929..6038429 | - | 501 | WP_003098996.1 | DUF305 domain-containing protein | - |
| PALA20_RS28365 (PALA20_05606) | 6038880..6039626 | + | 747 | WP_003120040.1 | hypothetical protein | - |
| PALA20_RS28370 (PALA20_05607) | 6039745..6039957 | + | 213 | WP_003090093.1 | AlpA family transcriptional regulator | - |
| PALA20_RS28375 (PALA20_05608) | 6040000..6040875 | + | 876 | WP_003090095.1 | Sporulation initiation inhibitor protein Soj | VF |
| PALA20_RS28380 (PALA20_05609) | 6040859..6041128 | + | 270 | WP_003050422.1 | hypothetical protein | - |
| PALA20_RS28385 (PALA20_05610) | 6041121..6042800 | + | 1680 | WP_003120039.1 | ParB family protein | - |
| PALA20_RS28390 (PALA20_05611) | 6042815..6043375 | + | 561 | WP_003090097.1 | DUF2857 domain-containing protein | - |
| PALA20_RS28395 (PALA20_05612) | 6043379..6044611 | + | 1233 | WP_134628580.1 | STY4528 family pathogenicity island replication protein | - |
| PALA20_RS28400 (PALA20_05613) | 6045042..6045836 | + | 795 | WP_094775991.1 | TIGR03761 family integrating conjugative element protein | - |
| PALA20_RS28405 (PALA20_05614) | 6045833..6046360 | + | 528 | WP_057393109.1 | DUF3158 family protein | - |
| PALA20_RS28410 (PALA20_05615) | 6046434..6046886 | + | 453 | WP_003120036.1 | single-stranded DNA-binding protein | - |
| PALA20_RS28415 (PALA20_05616) | 6047162..6049174 | + | 2013 | WP_003120035.1 | DNA topoisomerase III | - |
| PALA20_RS28420 (PALA20_05617) | 6049706..6051316 | + | 1611 | WP_094775992.1 | DNA cytosine methyltransferase | - |
| PALA20_RS28425 (PALA20_05618) | 6051560..6052117 | + | 558 | WP_023108433.1 | hypothetical protein | - |
| PALA20_RS28430 (PALA20_05619) | 6052451..6052672 | + | 222 | WP_094775993.1 | hypothetical protein | - |
| PALA20_RS28435 (PALA20_05620) | 6052694..6053086 | + | 393 | WP_003050375.1 | hypothetical protein | - |
| PALA20_RS28440 (PALA20_05621) | 6053268..6053954 | + | 687 | WP_094775994.1 | hypothetical protein | - |
| PALA20_RS28445 (PALA20_05622) | 6054038..6054775 | + | 738 | WP_094775995.1 | ABC transporter substrate-binding protein | - |
| PALA20_RS28450 (PALA20_05623) | 6054872..6055150 | + | 279 | WP_023108437.1 | hypothetical protein | - |
| PALA20_RS28455 (PALA20_05624) | 6055439..6056263 | + | 825 | WP_094775996.1 | GTPase | - |
| PALA20_RS28460 (PALA20_05625) | 6056388..6056741 | + | 354 | WP_058064726.1 | DUF3085 domain-containing protein | - |
| PALA20_RS28465 (PALA20_05626) | 6056883..6057725 | + | 843 | WP_033962283.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| PALA20_RS28470 (PALA20_05627) | 6057731..6058240 | + | 510 | WP_175223946.1 | hypothetical protein | - |
| PALA20_RS28475 (PALA20_05628) | 6058503..6059432 | + | 930 | WP_094775997.1 | DUF3577 domain-containing protein | - |
| PALA20_RS28480 (PALA20_05629) | 6059489..6060178 | + | 690 | WP_066695543.1 | DUF3275 family protein | - |
| PALA20_RS28485 (PALA20_05630) | 6060271..6060612 | + | 342 | WP_023108442.1 | hypothetical protein | - |
| PALA20_RS28490 (PALA20_05631) | 6060719..6061126 | + | 408 | WP_066695541.1 | hypothetical protein | - |
| PALA20_RS28495 (PALA20_05632) | 6061143..6061403 | + | 261 | WP_003090124.1 | hypothetical protein | - |
| PALA20_RS28500 (PALA20_05633) | 6061480..6062127 | + | 648 | WP_094775998.1 | hypothetical protein | - |
| PALA20_RS28505 (PALA20_05634) | 6062168..6063301 | + | 1134 | WP_254919825.1 | DUF6094 domain-containing protein | - |
| PALA20_RS28510 (PALA20_05635) | 6063352..6063672 | + | 321 | WP_066695536.1 | methyltransferase | - |
| PALA20_RS28515 (PALA20_05636) | 6063757..6064062 | + | 306 | WP_011804740.1 | hypothetical protein | - |
| PALA20_RS28520 (PALA20_05637) | 6064199..6066478 | + | 2280 | WP_034085644.1 | helicase-related protein | - |
| PALA20_RS28525 (PALA20_05638) | 6066614..6067216 | + | 603 | WP_034085645.1 | hypothetical protein | VF |
| PALA20_RS28530 (PALA20_05639) | 6067213..6067857 | + | 645 | WP_034085646.1 | hypothetical protein | - |
| PALA20_RS28535 (PALA20_05640) | 6067872..6068612 | + | 741 | WP_034085647.1 | TIGR03759 family integrating conjugative element protein | - |
| PALA20_RS28540 (PALA20_05641) | 6068594..6069184 | + | 591 | WP_034085649.1 | hypothetical protein | VF |
| PALA20_RS28545 (PALA20_05642) | 6069181..6069729 | + | 549 | WP_034085650.1 | integrating conjugative element protein | - |
| PALA20_RS28550 (PALA20_05643) | 6069734..6071926 | + | 2193 | WP_034085652.1 | type IV conjugative transfer system coupling protein TraD | - |
| PALA20_RS28555 (PALA20_05644) | 6071923..6072672 | + | 750 | WP_003090151.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| PALA20_RS28560 (PALA20_05645) | 6072713..6075337 | - | 2625 | WP_023108454.1 | AAA family ATPase | - |
| PALA20_RS28565 (PALA20_05646) | 6075347..6076072 | - | 726 | WP_003050273.1 | CBASS effector endonuclease NucC | - |
| PALA20_RS28570 (PALA20_05647) | 6076111..6077013 | - | 903 | WP_003153640.1 | CBASS oligonucleotide cyclase | - |
| PALA20_RS28575 (PALA20_05648) | 6077013..6077513 | - | 501 | WP_003090159.1 | type III CBASS phage resistance system CD-NTase-associated protein Cap7 | - |
| PALA20_RS28580 (PALA20_05649) | 6077510..6077980 | - | 471 | WP_003090160.1 | type III CBASS phage resistance system CD-NTase-associated protein Cap8 | - |
| PALA20_RS28585 (PALA20_05650) | 6077977..6078891 | - | 915 | WP_003050256.1 | AAA family ATPase | - |
| PALA20_RS28590 (PALA20_05651) | 6078909..6079484 | - | 576 | WP_003153636.1 | PIN domain-containing protein | Toxin Detail |
| PALA20_RS28595 (PALA20_05652) | 6079481..6079951 | - | 471 | WP_003050245.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| PALA20_RS28600 (PALA20_05653) | 6080155..6080538 | + | 384 | WP_003090167.1 | RAQPRD family integrative conjugative element protein | - |
| PALA20_RS28605 (PALA20_05654) | 6080535..6080768 | + | 234 | WP_003050225.1 | TIGR03758 family integrating conjugative element protein | - |
| PALA20_RS28610 (PALA20_05655) | 6080785..6081144 | + | 360 | WP_003153634.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| PALA20_RS28615 (PALA20_05656) | 6081157..6081555 | + | 399 | WP_003105639.1 | TIGR03750 family conjugal transfer protein | - |
| PALA20_RS28620 (PALA20_05657) | 6081552..6082244 | + | 693 | WP_023100424.1 | TIGR03746 family integrating conjugative element protein | - |
| PALA20_RS28625 (PALA20_05658) | 6082241..6083152 | + | 912 | WP_269973235.1 | TIGR03749 family integrating conjugative element protein | - |
| PALA20_RS28630 (PALA20_05659) | 6083142..6084560 | + | 1419 | WP_023100422.1 | TIGR03752 family integrating conjugative element protein | - |
| PALA20_RS28635 (PALA20_05660) | 6084541..6084990 | + | 450 | WP_023098546.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| PALA20_RS28640 (PALA20_05661) | 6084990..6087881 | + | 2892 | WP_269973236.1 | conjugative transfer ATPase | - |
| PALA20_RS28645 (PALA20_05662) | 6087906..6088670 | + | 765 | WP_023098544.1 | thioredoxin domain-containing protein | - |
| PALA20_RS28650 (PALA20_05663) | 6088846..6089340 | + | 495 | WP_009518518.1 | DNA repair protein RadC | - |
| PALA20_RS28655 (PALA20_05664) | 6089504..6089950 | + | 447 | WP_009518519.1 | TIGR03757 family integrating conjugative element protein | - |
| PALA20_RS28660 (PALA20_05665) | 6089947..6090894 | + | 948 | WP_009518520.1 | TIGR03756 family integrating conjugative element protein | - |
| PALA20_RS28665 (PALA20_05666) | 6090904..6092298 | + | 1395 | WP_227337149.1 | integrating conjugative element protein | - |
| PALA20_RS28670 (PALA20_05667) | 6092295..6092654 | + | 360 | WP_009518522.1 | hypothetical protein | - |
| PALA20_RS28675 (PALA20_05668) | 6092669..6094186 | + | 1518 | WP_009518523.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| PALA20_RS28680 (PALA20_05669) | 6094202..6094579 | - | 378 | WP_009518524.1 | DUF3742 family protein | - |
| PALA20_RS28685 (PALA20_05670) | 6094606..6095064 | - | 459 | WP_009518525.1 | type II toxin-antitoxin system YhaV family toxin | Toxin Detail |
| PALA20_RS28690 (PALA20_05671) | 6095064..6095381 | - | 318 | WP_023098543.1 | type II toxin-antitoxin system PrlF family antitoxin | Antitoxin Detail |
| PALA20_RS28695 (PALA20_05672) | 6095681..6097498 | + | 1818 | WP_023098542.1 | MobH family relaxase | - |
| PALA20_RS28700 (PALA20_05673) | 6097480..6097626 | - | 147 | WP_023098541.1 | MerR family DNA-binding transcriptional regulator | - |
| PALA20_RS28705 (PALA20_05674) | 6097775..6098686 | - | 912 | WP_023098540.1 | NAD(P)H-binding protein | - |
| PALA20_RS28710 (PALA20_05675) | 6098823..6100208 | + | 1386 | Protein_5674 | Efflux pump membrane transporter BepE | VF |
| PALA20_RS28715 (PALA20_05676) | 6100246..6100680 | - | 435 | WP_003131969.1 | mercury resistance transcriptional regulator MerR | - |
| PALA20_RS28720 (PALA20_05677) | 6100752..6101102 | + | 351 | WP_003131974.1 | mercuric ion transporter MerT | - |
| PALA20_RS28725 (PALA20_05678) | 6101115..6101390 | + | 276 | WP_003131987.1 | mercury resistance system periplasmic binding protein MerP | - |
| PALA20_RS28730 (PALA20_05679) | 6101462..6103147 | + | 1686 | WP_003156770.1 | mercury(II) reductase | - |
| PALA20_RS28735 (PALA20_05680) | 6103165..6103530 | + | 366 | WP_000995360.1 | mercury resistance co-regulator MerD | - |
| PALA20_RS28740 (PALA20_05681) | 6103527..6103763 | + | 237 | WP_227337132.1 | broad-spectrum mercury transporter MerE | - |
| PALA20_RS28745 (PALA20_05682) | 6103760..6104749 | + | 990 | WP_003132006.1 | hypothetical protein | VF |
| PALA20_RS28750 (PALA20_05683) | 6104880..6105440 | + | 561 | WP_003124096.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| PALA20_RS28755 (PALA20_05684) | 6105443..6108409 | + | 2967 | Protein_5683 | Tn3 family transposase TnpA_ISPa38 | Transposase |
| PALA20_RS28760 (PALA20_05686) | 6108444..6109745 | + | 1302 | Protein_5684 | Multidrug resistance protein MexB | VF |
| PALA20_RS28765 (PALA20_05687) | 6109876..6111330 | + | 1455 | WP_023098535.1 | Toluene efflux pump outer membrane protein TtgI | VF |
| PALA20_RS28770 (PALA20_05688) | 6111509..6112642 | + | 1134 | WP_227337131.1 | MFS transporter | - |
| PALA20_RS28775 | 6112744..6113063 | - | 320 | Protein_5687 | superoxide dismutase [Mn] | - |
| PALA20_RS28780 (PALA20_05689) | 6113144..6113596 | + | 453 | WP_023098533.1 | IS607 family transposase ISLhe9 | Transposase |
| PALA20_RS28785 (PALA20_05690) | 6113831..6114253 | - | 423 | WP_003090234.1 | MerR family DNA-binding protein | - |
| PALA20_RS28790 | 6114397..6114831 | + | 435 | WP_079279895.1 | hypothetical protein | - |
| PALA20_RS28795 (PALA20_05691) | 6114986..6115387 | + | 402 | WP_003090236.1 | hypothetical protein | - |
| PALA20_RS28800 (PALA20_05692) | 6115399..6115638 | + | 240 | WP_003090237.1 | DUF2933 domain-containing protein | - |
| PALA20_RS28805 (PALA20_05693) | 6115635..6116285 | + | 651 | WP_003090238.1 | isoprenylcysteine carboxylmethyltransferase family protein | - |
| PALA20_RS28810 (PALA20_05694) | 6116287..6116445 | + | 159 | WP_010791738.1 | hypothetical protein | - |
| PALA20_RS28815 (PALA20_05695) | 6116456..6117319 | + | 864 | WP_003090242.1 | polyphosphate kinase 2 | - |
| PALA20_RS28820 (PALA20_05696) | 6117352..6119817 | + | 2466 | WP_134628332.1 | heavy metal translocating P-type ATPase | - |
| PALA20_RS28825 (PALA20_05697) | 6119849..6121156 | + | 1308 | WP_208538165.1 | MFS transporter | - |
| PALA20_RS28830 (PALA20_05698) | 6121153..6121764 | + | 612 | WP_009516025.1 | LemA family protein | - |
| PALA20_RS28835 (PALA20_05699) | 6121766..6122671 | + | 906 | WP_023098530.1 | TPM domain-containing protein | - |
| PALA20_RS28840 (PALA20_05700) | 6122673..6123170 | + | 498 | WP_134628334.1 | TPM domain-containing protein | - |
| PALA20_RS28845 (PALA20_05701) | 6123196..6124557 | + | 1362 | WP_003090261.1 | MBL fold metallo-hydrolase | - |
| PALA20_RS28850 (PALA20_05702) | 6124554..6126107 | + | 1554 | WP_023098529.1 | thymidine phosphorylase family protein | - |
| PALA20_RS28855 (PALA20_05703) | 6126104..6127003 | + | 900 | WP_023098528.1 | ribose-phosphate pyrophosphokinase | - |
| PALA20_RS28860 (PALA20_05704) | 6127057..6127701 | + | 645 | WP_003121541.1 | hypothetical protein | - |
| PALA20_RS28865 (PALA20_05705) | 6127698..6127952 | + | 255 | WP_023098527.1 | hypothetical protein | - |
| PALA20_RS28870 (PALA20_05706) | 6127949..6128980 | + | 1032 | WP_023098526.1 | hydroxyacid dehydrogenase | - |
| PALA20_RS28875 (PALA20_05707) | 6128977..6130599 | + | 1623 | WP_033986479.1 | AarF/UbiB family protein | - |
| PALA20_RS28880 (PALA20_05708) | 6130627..6131682 | + | 1056 | WP_023098524.1 | type II glyceraldehyde-3-phosphate dehydrogenase | - |
| PALA20_RS28885 (PALA20_05709) | 6131679..6132941 | + | 1263 | WP_023098523.1 | MgtC/SapB family protein | - |
| PALA20_RS28890 (PALA20_05710) | 6132950..6133780 | - | 831 | WP_134628330.1 | hypothetical protein | VF |
| PALA20_RS28895 (PALA20_05711) | 6133886..6134488 | + | 603 | WP_227337130.1 | hypothetical protein | VF |
| PALA20_RS28900 (PALA20_05712) | 6134666..6137095 | - | 2430 | WP_023098520.1 | hypothetical protein | - |
| PALA20_RS28905 (PALA20_05713) | 6137202..6138530 | - | 1329 | WP_023098519.1 | cyclopropane-fatty-acyl-phospholipid synthase family protein | - |
| PALA20_RS28910 (PALA20_05714) | 6138685..6139137 | - | 453 | WP_009516039.1 | MerR family DNA-binding protein | - |
| PALA20_RS28915 (PALA20_05715) | 6139355..6140488 | - | 1134 | WP_003090282.1 | acetate/propionate family kinase | - |
| PALA20_RS28920 (PALA20_05716) | 6140784..6142451 | - | 1668 | WP_023098518.1 | DUF3141 domain-containing protein | - |
| PALA20_RS28925 (PALA20_05717) | 6142460..6142759 | - | 300 | WP_003090284.1 | heavy-metal-associated domain-containing protein | - |
| PALA20_RS28930 (PALA20_05718) | 6142778..6143104 | - | 327 | WP_003090285.1 | DUF2933 domain-containing protein | - |
| PALA20_RS28935 (PALA20_05719) | 6143739..6145175 | - | 1437 | WP_003097498.1 | Sensor histidine kinase CusS | VF |
| PALA20_RS28940 (PALA20_05720) | 6145147..6145839 | - | 693 | WP_003097513.1 | Transcriptional regulatory protein CusR | VF |
| PALA20_RS28945 (PALA20_05721) | 6146094..6147995 | + | 1902 | WP_003097515.1 | copper resistance system multicopper oxidase | - |
| PALA20_RS28950 (PALA20_05722) | 6148021..6149001 | + | 981 | WP_005408883.1 | copper resistance protein B | - |
| PALA20_RS28955 (PALA20_05723) | 6149039..6149524 | + | 486 | WP_023098517.1 | DUF411 domain-containing protein | - |
| PALA20_RS28960 (PALA20_05724) | 6149558..6149830 | + | 273 | WP_003097518.1 | DUF2933 domain-containing protein | - |
| PALA20_RS28965 (PALA20_05725) | 6150118..6152424 | + | 2307 | WP_228846310.1 | heavy metal translocating P-type ATPase | - |
| PALA20_RS28970 (PALA20_05726) | 6152566..6152952 | + | 387 | WP_023098516.1 | copper homeostasis periplasmic binding protein CopC | - |
| PALA20_RS28975 (PALA20_05727) | 6152957..6153883 | + | 927 | WP_003097522.1 | copper homeostasis membrane protein CopD | - |
| PALA20_RS28980 (PALA20_05728) | 6154012..6154296 | + | 285 | WP_003090336.1 | CopK family periplasmic copper-binding protein | - |
| PALA20_RS28985 (PALA20_05729) | 6154530..6155420 | + | 891 | WP_003097524.1 | LysR family transcriptional regulator | - |
| PALA20_RS28990 | 6155425..6155730 | - | 306 | WP_134628489.1 | helix-turn-helix transcriptional regulator | - |
| PALA20_RS28995 | 6155838..6156479 | + | 642 | WP_023657317.1 | LysR substrate-binding domain-containing protein | - |
| PALA20_RS29000 (PALA20_05731) | 6156766..6157077 | + | 312 | WP_006226245.1 | hypothetical protein | - |
| PALA20_RS29005 (PALA20_05732) | 6157153..6158460 | + | 1308 | WP_208538185.1 | TolC family protein | - |
| PALA20_RS29010 (PALA20_05733) | 6158476..6159993 | + | 1518 | WP_023098514.1 | hypothetical protein | VF |
| PALA20_RS29015 (PALA20_05734) | 6159990..6163109 | + | 3120 | WP_023098513.1 | efflux RND transporter permease subunit | - |
| PALA20_RS29020 | 6163240..6163596 | - | 357 | WP_071537899.1 | LysR substrate-binding domain-containing protein | - |
| PALA20_RS29025 (PALA20_05735) | 6163651..6165585 | - | 1935 | WP_023980170.1 | hypothetical protein ; Integrase | Integrase |
| PALA20_RS29040 (PALA20_05738) | 6166184..6166957 | + | 774 | WP_003090903.1 | hypothetical protein | - |
| PALA20_RS29045 (PALA20_05739) | 6167019..6167681 | + | 663 | WP_003090904.1 | glutathione S-transferase family protein | - |
| PALA20_RS29050 (PALA20_05740) | 6167691..6168173 | - | 483 | WP_003090905.1 | GAF domain-containing protein | - |
| PALA20_RS29055 (PALA20_05741) | 6168170..6169060 | - | 891 | WP_003090906.1 | ATP-binding protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|