MGE detailed information
MGE type: Prophage MGE length: 99065 bp
Accession: NZ_CP104647 Location: 4974807..5073871 Organism: Escherichia coli strain PNUSAE008406 Replicon: chromosome
Accession: NZ_CP104647 Location: 4974807..5073871 Organism: Escherichia coli strain PNUSAE008406 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5921_RS24645 (4971321) | 4971321..4972067 | + | 747 | WP_000636568.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| N5921_RS24650 (4972156) | 4972156..4972842 | + | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| N5921_RS24655 (4973019) | 4973019..4973222 | + | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| N5921_RS24660 (4973258) | 4973258..4974718 | - | 1461 | WP_000527769.1 | mannitol dehydrogenase family protein | - |
| N5921_RS24665 (4974807) | 4974807..4976090 | - | 1284 | Protein_4809 | MHS family MFS transporter YdfJ | - |
| N5921_RS24670 (4976222) | 4976222..4976464 | + | 243 | WP_001120551.1 | DinI-like family protein | - |
| N5921_RS24675 (4976626) | 4976626..4977267 | - | 642 | WP_001143804.1 | hypothetical protein | VF |
| N5921_RS24680 (4977349) | 4977349..4977978 | - | 630 | WP_001303500.1 | hypothetical protein | VF |
| N5921_RS24685 (4978051) | 4978051..4978626 | - | 576 | WP_001131658.1 | hypothetical protein | VF |
| N5921_RS24690 (4978740) | 4978740..4979009 | - | 270 | WP_001023407.1 | phage tail fiber C-terminal domain-containing protein | - |
| N5921_RS24695 (4979011) | 4979011..4980324 | - | 1314 | WP_261589711.1 | ISNCY family transposase KIS | Transposase |
| N5921_RS24700 (4980389) | 4980389..4980990 | - | 602 | Protein_4816 | Ail/Lom family outer membrane beta-barrel protein | - |
| N5921_RS24705 (4981058) | 4981058..4983409 | - | 2352 | WP_261589769.1 | phage tail protein | - |
| N5921_RS24710 (4983568) | 4983568..4984089 | - | 522 | Protein_4818 | phage tail protein | - |
| N5921_RS24715 (4985475) | 4985475..4986056 | - | 582 | WP_001089999.1 | tail assembly protein | - |
| N5921_RS24720 (4986053) | 4986053..4986796 | - | 744 | WP_000194720.1 | C40 family peptidase | - |
| N5921_RS24725 (4986807) | 4986807..4987505 | - | 699 | WP_001179510.1 | phage minor tail protein L | - |
| N5921_RS24730 (4987505) | 4987505..4987843 | - | 339 | WP_261589712.1 | phage tail protein | - |
| N5921_RS24735 (4987836) | 4987836..4991078 | - | 3243 | Protein_4823 | phage tail tape measure protein | - |
| N5921_RS24740 (4991128) | 4991128..4991336 | - | 209 | Protein_4824 | DUF4035 domain-containing protein | - |
| N5921_RS24745 (4991438) | 4991438..4991809 | - | 372 | Protein_4825 | phage tail assembly chaperone | - |
| N5921_RS24750 (4991815) | 4991815..4992530 | - | 716 | Protein_4826 | immunoglobulin domain-containing protein | - |
| N5921_RS24755 (4992589) | 4992589..4992933 | - | 345 | WP_187027675.1 | DUF3168 domain-containing protein | - |
| N5921_RS24760 (4992930) | 4992930..4993376 | - | 447 | WP_000573374.1 | HK97 gp10 family phage protein | - |
| N5921_RS24765 (4993373) | 4993373..4993723 | - | 351 | WP_001007901.1 | phage head closure protein | - |
| N5921_RS24770 (4993733) | 4993733..4994059 | - | 327 | WP_000126026.1 | head-tail connector protein | - |
| N5921_RS24775 (4994056) | 4994056..4996154 | - | 2099 | Protein_4831 | phage portal protein | - |
| N5921_RS24780 (4996100) | 4996100..4996321 | - | 222 | WP_001063023.1 | hypothetical protein | - |
| N5921_RS24785 (4996366) | 4996366..4996962 | - | 597 | Protein_4833 | phage major capsid protein | - |
| N5921_RS24790 (4996964) | 4996964..4997272 | - | 309 | Protein_4834 | YdfR family protein | - |
| N5921_RS24795 (4997277) | 4997277..4997492 | - | 216 | WP_024180155.1 | class II holin family protein | - |
| N5921_RS24800 (4997931) | 4997931..4999782 | - | 1852 | Protein_4836 | DUF1737 domain-containing protein | - |
| N5921_RS24805 (4999759) | 4999759..4999901 | + | 143 | Protein_4837 | hypothetical protein | - |
| N5921_RS24810 (5000096) | 5000096..5000263 | - | 168 | WP_000216636.1 | DUF3927 family protein | - |
| N5921_RS24815 (5000260) | 5000260..5000691 | - | 432 | WP_001302123.1 | tellurite resistance protein | - |
| N5921_RS24830 (5001142) | 5001142..5001855 | - | 714 | WP_000301797.1 | helix-turn-helix domain-containing protein | - |
| N5921_RS24835 (5001991) | 5001991..5002188 | - | 198 | WP_000917763.1 | hypothetical protein | - |
| N5921_RS24840 (5002413) | 5002413..5002967 | - | 555 | WP_000640035.1 | DUF1133 family protein | - |
| N5921_RS24845 (5003030) | 5003030..5003335 | - | 306 | WP_001217444.1 | RusA family crossover junction endodeoxyribonuclease | - |
| N5921_RS24850 (5003348) | 5003348..5004398 | - | 1051 | Protein_4844 | DUF968 domain-containing protein | - |
| N5921_RS24855 (5004400) | 5004400..5004672 | - | 273 | WP_000191872.1 | hypothetical protein | - |
| N5921_RS24860 (5004794) | 5004794..5005138 | - | 345 | WP_000756596.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| N5921_RS24865 (5005258) | 5005258..5005413 | - | 156 | WP_000813258.1 | Hok/Gef family protein | Toxin Detail |
| N5921_RS24870 (5005704) | 5005704..5006261 | - | 558 | WP_000104474.1 | DUF551 domain-containing protein | - |
| N5921_RS24875 (5006263) | 5006263..5006481 | - | 219 | WP_000683609.1 | DUF4014 family protein | - |
| N5921_RS24880 (5006609) | 5006609..5006920 | - | 312 | WP_001289673.1 | hypothetical protein | - |
| N5921_RS24885 (5006913) | 5006913..5007140 | - | 228 | WP_000699809.1 | hypothetical protein | - |
| N5921_RS24890 (5007137) | 5007137..5007418 | - | 282 | WP_000603384.1 | DNA-binding protein | - |
| N5921_RS24895 (5007451) | 5007451..5008167 | - | 717 | WP_000450627.1 | DUF1627 domain-containing protein | - |
| N5921_RS24900 (5008201) | 5008201..5008662 | - | 462 | WP_000139447.1 | replication protein P | - |
| N5921_RS24905 (5008655) | 5008655..5009698 | - | 1044 | WP_001262402.1 | DnaT-like ssDNA-binding domain-containing protein | - |
| N5921_RS24910 (5009767) | 5009767..5010192 | - | 426 | WP_000693878.1 | toxin YdaT family protein | - |
| N5921_RS24915 (5010176) | 5010176..5010418 | - | 243 | WP_000747948.1 | Cro/CI family transcriptional regulator | - |
| N5921_RS24920 (5010810) | 5010810..5011148 | + | 339 | WP_001416688.1 | S24 family peptidase | - |
| N5921_RS24925 (5011441) | 5011441..5011593 | + | 153 | WP_000380316.1 | DUF1391 family protein | - |
| N5921_RS24930 (5011605) | 5011605..5012243 | + | 639 | WP_000394548.1 | hypothetical protein | - |
| N5921_RS24935 (5012244) | 5012244..5012453 | - | 210 | WP_001133037.1 | hypothetical protein | - |
| N5921_RS24940 (5013018) | 5013018..5013206 | + | 189 | WP_000449175.1 | cell division inhibition protein DicB | - |
| N5921_RS24945 (5013203) | 5013203..5013391 | + | 189 | WP_000199475.1 | DUF1482 family protein | - |
| N5921_RS24950 (5013484) | 5013484..5014722 | + | 1239 | Protein_4864 | exonuclease | - |
| N5921_RS24955 (5014710) | 5014710..5015261 | + | 552 | Protein_4865 | Putative defective protein IntQ ; Integrase | Integrase |
| N5921_RS24960 (5015439) | 5015439..5015681 | + | 243 | WP_001120551.1 | DinI-like family protein | - |
| N5921_RS24965 (5015731) | 5015731..5016549 | - | 819 | Protein_4867 | IS256 family transposase IS1414 | Transposase |
| N5921_RS24970 (5016808) | 5016808..5017023 | + | 216 | WP_151332527.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| N5921_RS24975 (5017020) | 5017020..5017367 | + | 348 | WP_261589713.1 | IS66 family transposase ISEc8 | Transposase |
| N5921_RS24980 (5017418) | 5017418..5018956 | + | 1539 | Protein_4870 | IS66-like element ISEc8 family transposase | - |
| N5921_RS24985 (5018994) | 5018994..5019389 | - | 396 | Protein_4871 | IS256 family transposase ISEic2 | Transposase |
| N5921_RS24990 (5019539) | 5019539..5020189 | - | 651 | WP_001121225.1 | hypothetical protein | VF |
| N5921_RS24995 (5020900) | 5020900..5021475 | - | 576 | WP_001131642.1 | hypothetical protein | VF |
| N5921_RS25000 (5021589) | 5021589..5021858 | - | 270 | WP_001023362.1 | phage tail fiber C-terminal domain-containing protein | - |
| N5921_RS25005 (5021860) | 5021860..5023083 | - | 1224 | WP_000268860.1 | prophage tail fiber N-terminal domain-containing protein | - |
| N5921_RS25010 (5023148) | 5023148..5023747 | - | 600 | WP_001230508.1 | Outer membrane protein X | VF |
| N5921_RS25015 (5023815) | 5023815..5027294 | - | 3480 | Protein_4877 | host specificity protein J | - |
| N5921_RS25020 (5027557) | 5027557..5027919 | - | 363 | Protein_4878 | phage minor tail protein L | - |
| N5921_RS25025 (5027919) | 5027919..5028260 | - | 342 | WP_000807954.1 | phage tail protein | - |
| N5921_RS25030 (5028253) | 5028253..5031495 | - | 3243 | Protein_4880 | phage tail tape measure protein | - |
| N5921_RS25035 (5031543) | 5031543..5031752 | - | 210 | WP_001453746.1 | DUF4035 domain-containing protein | - |
| N5921_RS25040 (5031848) | 5031848..5032222 | - | 375 | WP_000710952.1 | phage tail assembly chaperone | - |
| N5921_RS25045 (5032237) | 5032237..5032954 | - | 718 | Protein_4883 | immunoglobulin domain-containing protein | - |
| N5921_RS25050 (5033020) | 5033020..5033364 | - | 345 | WP_000133388.1 | DUF3168 domain-containing protein | - |
| N5921_RS25055 (5033361) | 5033361..5033807 | - | 447 | WP_000573374.1 | HK97 gp10 family phage protein | - |
| N5921_RS25060 (5033804) | 5033804..5034154 | - | 351 | WP_001007905.1 | phage head closure protein | - |
| N5921_RS25065 (5034164) | 5034164..5034490 | - | 327 | WP_000125988.1 | head-tail connector protein | - |
| N5921_RS25070 (5034493) | 5034493..5037043 | - | 2551 | Protein_4888 | phage portal protein | - |
| N5921_RS25075 (5037016) | 5037016..5037235 | - | 220 | Protein_4889 | hypothetical protein | - |
| N5921_RS25080 (5037281) | 5037281..5039218 | - | 1938 | WP_000173030.1 | phage major capsid protein | - |
| N5921_RS25085 (5039215) | 5039215..5040939 | - | 1725 | Protein_4891 | terminase large subunit | - |
| N5921_RS25090 (5040936) | 5040936..5041502 | - | 567 | Protein_4892 | terminase small subunit | - |
| N5921_RS25095 (5041794) | 5041794..5042159 | - | 366 | WP_000279796.1 | HNH endonuclease | - |
| N5921_RS25100 (5042201) | 5042201..5042429 | + | 229 | Protein_4894 | YlcI/YnfO family protein | - |
| N5921_RS25105 (5042854) | 5042854..5043039 | - | 186 | WP_012816791.1 | Rz1 family lipoprotein | - |
| N5921_RS25110 (5043297) | 5043297..5043413 | - | 117 | WP_000539789.1 | hypothetical protein | - |
| N5921_RS25115 (5043413) | 5043413..5043984 | - | 572 | Protein_4897 | hypothetical protein | - |
| N5921_RS25120 (5044255) | 5044255..5044791 | - | 537 | WP_261589770.1 | lysozyme | - |
| N5921_RS25125 (5044829) | 5044829..5044969 | - | 141 | Protein_4899 | hypothetical protein | - |
| N5921_RS25130 (5044903) | 5044903..5045118 | - | 216 | Protein_4900 | YdfR family protein | - |
| N5921_RS25135 (5045188) | 5045188..5045403 | - | 216 | WP_024180155.1 | class II holin family protein | - |
| N5921_RS25140 (5045842) | 5045842..5047693 | - | 1852 | Protein_4902 | DUF1737 domain-containing protein | - |
| N5921_RS25145 (5047670) | 5047670..5047813 | + | 144 | Protein_4903 | hypothetical protein | - |
| N5921_RS25150 (5048008) | 5048008..5048175 | - | 168 | WP_261589714.1 | DUF3927 family protein | - |
| N5921_RS25155 (5048172) | 5048172..5048600 | - | 429 | WP_001303509.1 | tellurite resistance protein | - |
| N5921_RS25175 (5049239) | 5049239..5049928 | - | 690 | WP_001059381.1 | bacteriophage antitermination protein Q | - |
| N5921_RS25180 (5049925) | 5049925..5050284 | - | 360 | WP_001217455.1 | RusA family crossover junction endodeoxyribonuclease | - |
| N5921_RS25185 (5050297) | 5050297..5051347 | - | 1051 | Protein_4908 | DUF968 domain-containing protein | - |
| N5921_RS25190 (5051349) | 5051349..5051626 | - | 278 | Protein_4909 | hypothetical protein | - |
| N5921_RS25195 (5051794) | 5051794..5051949 | - | 156 | WP_001303917.1 | type I toxin-antitoxin system toxin HokD | - |
| N5921_RS25200 (5052196) | 5052196..5052300 | - | 105 | WP_261589715.1 | hypothetical protein | - |
| N5921_RS25205 (5052414) | 5052414..5052997 | - | 584 | Protein_4912 | DUF551 domain-containing protein | - |
| N5921_RS25210 (5053054) | 5053054..5053449 | - | 396 | WP_001118159.1 | DUF977 family protein | - |
| N5921_RS25215 (5053465) | 5053465..5054234 | - | 770 | Protein_4914 | DUF1627 domain-containing protein | - |
| N5921_RS25220 (5054260) | 5054260..5055000 | - | 741 | WP_000788938.1 | ATP-binding protein | - |
| N5921_RS25225 (5055007) | 5055007..5055969 | - | 963 | WP_000095669.1 | helix-turn-helix domain-containing protein | - |
| N5921_RS25230 (5055992) | 5055992..5056417 | - | 426 | WP_000693943.1 | toxin YdaT family protein | - |
| N5921_RS25235 (5056414) | 5056414..5056716 | - | 303 | WP_000172738.1 | transcriptional regulator | - |
| N5921_RS25240 (5056814) | 5056814..5057185 | + | 372 | WP_001169686.1 | hypothetical protein | - |
| N5921_RS25245 (5057206) | 5057206..5057397 | + | 192 | WP_001302048.1 | hypothetical protein | - |
| N5921_RS25250 (5057399) | 5057399..5057677 | + | 279 | WP_001303511.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| N5921_RS25255 (5058030) | 5058030..5058329 | + | 300 | WP_001240334.1 | hypothetical protein | - |
| N5921_RS25260 (5058401) | 5058401..5058619 | + | 219 | WP_001171930.1 | protein YdfC | - |
| N5921_RS25265 (5059188) | 5059188..5059377 | + | 190 | Protein_4924 | cell division inhibition protein DicB | - |
| N5921_RS25270 (5059374) | 5059374..5059565 | + | 192 | WP_001090200.1 | DUF1482 family protein | - |
| N5921_RS25275 (5059658) | 5059658..5060743 | + | 1086 | Protein_4926 | exonuclease | - |
| N5921_RS25280 (5060794) | 5060794..5062007 | + | 1214 | WP_261589719.1 | IS3 family transposase IS1203 | Transposase |
| N5921_RS25285 (5062048) | 5062048..5063442 | + | 1395 | Protein_4928 | 3'-5' exoribonuclease | - |
| N5921_RS25290 (5063515) | 5063515..5063766 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| N5921_RS25295 (5063801) | 5063801..5064483 | + | 683 | Protein_4930 | DUF3596 domain-containing protein | - |
| N5921_RS25300 (5064463) | 5064463..5064549 | - | 87 | Protein_4931 | hypothetical protein | - |
| N5921_RS25305 (5064755) | 5064755..5065081 | - | 327 | WP_001302046.1 | YnfA family protein | - |
| N5921_RS25310 (5065216) | 5065216..5065557 | + | 342 | WP_000705189.1 | DUF1283 family protein | - |
| N5921_RS25315 (5065592) | 5065592..5066152 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| N5921_RS25320 (5066155) | 5066155..5066865 | - | 711 | WP_001303515.1 | YnfC family lipoprotein | - |
| N5921_RS25325 (5066973) | 5066973..5067278 | + | 306 | WP_000778147.1 | DUF1161 domain-containing protein | - |
| N5921_RS25330 (5067477) | 5067477..5069903 | + | 2427 | WP_000041704.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| N5921_RS25335 (5069964) | 5069964..5072387 | + | 2424 | WP_001414236.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| N5921_RS25340 (5072398) | 5072398..5073015 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| N5921_RS25345 (5073017) | 5073017..5073871 | + | 855 | WP_000526515.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| N5921_RS25350 (5073914) | 5073914..5074528 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| N5921_RS25355 (5074686) | 5074686..5075978 | + | 1293 | WP_071525082.1 | voltage-gated ClC-type chloride channel ClcB | - |
| N5921_RS25360 (5075931) | 5075931..5076626 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| N5921_RS25365 (5076751) | 5076751..5077971 | - | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|