MGE detailed information
MGE type: Genomic_island MGE length: 9352 bp
Accession: NZ_CP104536 Location: 4179423..4188774 Organism: Escherichia coli strain E3 Replicon: chromosome
Accession: NZ_CP104536 Location: 4179423..4188774 Organism: Escherichia coli strain E3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N5O72_RS20265 (4174584) | 4174584..4175885 | + | 1302 | WP_000961957.1 | anaerobic C4-dicarboxylate transporter DcuA | - |
| N5O72_RS20270 (4176001) | 4176001..4176339 | + | 339 | WP_000883400.1 | divalent cation tolerance protein CutA | - |
| N5O72_RS20275 (4176315) | 4176315..4178012 | + | 1698 | WP_000068978.1 | protein-disulfide reductase DsbD | - |
| N5O72_RS20280 (4178049) | 4178049..4178624 | + | 576 | WP_001188520.1 | transcriptional regulator | - |
| N5O72_RS20290 (4179423) | 4179423..4180961 | + | 1539 | WP_001187182.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| N5O72_RS20295 (4181327) | 4181327..4182661 | + | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
| N5O72_RS20300 (4182741) | 4182741..4184888 | + | 2148 | WP_001295383.1 | lysine decarboxylase CadA | - |
| N5O72_RS20305 (4184947) | 4184947..4186404 | + | 1458 | WP_000856841.1 | dipeptide/tripeptide permease DtpC | - |
| N5O72_RS20310 (4186641) | 4186641..4188158 | + | 1518 | WP_001295074.1 | lysine--tRNA ligase | - |
| N5O72_RS20315 (4188277) | 4188277..4188450 | - | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | Toxin Detail |
| N5O72_RS20320 (4188478) | 4188478..4188774 | - | 297 | WP_001425728.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin Detail |
| N5O72_RS20325 (4189001) | 4189001..4189273 | - | 273 | WP_000405647.1 | GNAT family N-acetyltransferase | - |
| N5O72_RS20330 (4189285) | 4189285..4189515 | - | 231 | WP_000371700.1 | 4Fe-4S mono-cluster protein YjdI | - |
| N5O72_RS20335 (4189696) | 4189696..4191327 | + | 1632 | WP_001216487.1 | sensor histidine kinase | - |
| N5O72_RS20340 (4191324) | 4191324..4192043 | + | 720 | WP_000611288.1 | two-component system response regulator DcuR | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20087 | HG738867 | 4238430..4247780 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21458 | NC_007779 | 4357262..4366612 | 0.006 | |
| Escherichia coli BW2952 | Genomic island | TA23874 | NC_012759 | 4289342..4298692 | 0.006 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285032 | NZ_HG738867 | 4238430..4247780 | 0.006 |