MGE detailed information
MGE type: Conjugative plasmid MGE length: 128787 bp
Accession: NZ_CP104453 Location: 1..128787 Organism: Raoultella ornithinolytica strain MQB_Silv_108 Replicon: plasmid pIncFII_Silv108
Accession: NZ_CP104453 Location: 1..128787 Organism: Raoultella ornithinolytica strain MQB_Silv_108 Replicon: plasmid pIncFII_Silv108
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N2J37_RS29540 (N2J37_29540) | 19..894 | + | 876 | WP_004197644.1 | replication initiation protein | - |
| N2J37_RS29545 (N2J37_29545) | 1511..2137 | + | 627 | WP_004197649.1 | hypothetical protein | VF |
| N2J37_RS29550 (N2J37_29550) | 2134..2436 | + | 303 | WP_004197636.1 | hypothetical protein | - |
| N2J37_RS29555 (N2J37_29555) | 2892..3686 | - | 795 | WP_004197635.1 | site-specific integrase | - |
| N2J37_RS29560 (N2J37_29560) | 3884..4900 | - | 1017 | WP_020315256.1 | hypothetical protein | - |
| N2J37_RS29565 (N2J37_29565) | 4897..5220 | - | 324 | WP_022644730.1 | hypothetical protein | - |
| N2J37_RS29570 (N2J37_29570) | 5247..5642 | - | 396 | WP_017899885.1 | hypothetical protein | - |
| N2J37_RS29575 (N2J37_29575) | 5811..6116 | - | 306 | WP_001568026.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| N2J37_RS29580 (N2J37_29580) | 6118..6336 | - | 219 | WP_001568025.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| N2J37_RS29585 (N2J37_29585) | 6932..7180 | + | 249 | WP_032415726.1 | hypothetical protein | - |
| N2J37_RS29590 (N2J37_29590) | 7177..8409 | + | 1233 | WP_004200905.1 | hypothetical protein | - |
| N2J37_RS29595 (N2J37_29595) | 8543..9034 | + | 492 | WP_004200903.1 | hypothetical protein | - |
| N2J37_RS29600 (N2J37_29600) | 10037..10159 | - | 123 | WP_254913144.1 | hypothetical protein | - |
| N2J37_RS29605 (N2J37_29605) | 10259..10567 | - | 309 | WP_017896554.1 | hypothetical protein | - |
| N2J37_RS29610 (N2J37_29610) | 11061..11609 | + | 549 | WP_001567366.1 | thioredoxin fold domain-containing protein | - |
| N2J37_RS29615 (N2J37_29615) | 11656..12090 | + | 435 | WP_001567367.1 | cell envelope integrity protein TolA | - |
| N2J37_RS29620 (N2J37_29620) | 12319..13851 | - | 1533 | WP_009310015.1 | IS3 family transposase ISKpn38 | Transposase |
| N2J37_RS29625 (N2J37_29625) | 13940..15280 | + | 1341 | WP_000589001.1 | ISNCY family transposase ISCARN112 | Transposase |
| N2J37_RS29630 (N2J37_29630) | 15701..16939 | + | 1239 | WP_003030308.1 | IS110 family transposase ISCps4 | Transposase |
| N2J37_RS29635 (N2J37_29635) | 17415..17987 | + | 573 | WP_001515348.1 | cytochrome b/b6 domain-containing protein | - |
| N2J37_RS29640 (N2J37_29640) | 18187..19110 | + | 924 | WP_020277922.1 | cation diffusion facilitator family transporter | - |
| N2J37_RS29645 (N2J37_29645) | 19244..19348 | - | 105 | Protein_21 | hypothetical protein | - |
| N2J37_RS29650 (N2J37_29650) | 19373..19612 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| N2J37_RS29655 (N2J37_29655) | 19612..19899 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| N2J37_RS29660 (N2J37_29660) | 19954..20988 | - | 1035 | Protein_24 | IS481 family transposase ISKpn28 | Transposase |
| N2J37_RS29665 (N2J37_29665) | 21049..21141 | + | 93 | Protein_25 | Hok/Gef family protein | - |
| N2J37_RS29670 (N2J37_29670) | 21105..21206 | + | 102 | Protein_26 | FlmC family protein | - |
| N2J37_RS29675 (N2J37_29675) | 21371..21856 | - | 486 | WP_020277937.1 | hypothetical protein | - |
| N2J37_RS29680 (N2J37_29680) | 22046..22318 | + | 273 | WP_023280873.1 | hypothetical protein | - |
| N2J37_RS29685 (N2J37_29685) | 22315..22665 | + | 351 | WP_020277938.1 | hypothetical protein | - |
| N2J37_RS29690 (N2J37_29690) | 23182..23562 | + | 381 | WP_015632488.1 | hypothetical protein | - |
| N2J37_RS29695 (N2J37_29695) | 23628..23975 | + | 348 | WP_020316654.1 | hypothetical protein | - |
| N2J37_RS29700 (N2J37_29700) | 24063..24293 | + | 231 | WP_020805755.1 | hypothetical protein | - |
| N2J37_RS29705 (N2J37_29705) | 24340..25173 | + | 834 | WP_020277940.1 | N-6 DNA methylase | - |
| N2J37_RS29710 (N2J37_29710) | 25798..26328 | + | 531 | WP_020277941.1 | antirestriction protein | - |
| N2J37_RS29715 (N2J37_29715) | 26366..26845 | - | 480 | WP_020316636.1 | hypothetical protein | VF |
| N2J37_RS29720 (N2J37_29720) | 27277..27669 | + | 393 | WP_020805752.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| N2J37_RS29725 (N2J37_29725) | 27907..28608 | + | 702 | WP_023316396.1 | hypothetical protein | - |
| N2J37_RS29730 (N2J37_29730) | 28694..28894 | + | 201 | WP_048289787.1 | TraY domain-containing protein | - |
| N2J37_RS29735 (N2J37_29735) | 28963..29331 | + | 369 | WP_020316649.1 | type IV conjugative transfer system pilin TraA | - |
| N2J37_RS29740 (N2J37_29740) | 29345..29650 | + | 306 | WP_004178059.1 | type IV conjugative transfer system protein TraL | - |
| N2J37_RS29745 (N2J37_29745) | 29670..30236 | + | 567 | WP_020316627.1 | type IV conjugative transfer system protein TraE | - |
| N2J37_RS29750 (N2J37_29750) | 30223..30963 | + | 741 | WP_020804840.1 | type-F conjugative transfer system secretin TraK | - |
| N2J37_RS29755 (N2J37_29755) | 30963..32387 | + | 1425 | WP_023316397.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| N2J37_RS29760 (N2J37_29760) | 32380..32976 | + | 597 | WP_023316398.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| N2J37_RS29765 (N2J37_29765) | 32999..33568 | + | 570 | WP_023316399.1 | type IV conjugative transfer system lipoprotein TraV | - |
| N2J37_RS29770 (N2J37_29770) | 33700..34110 | + | 411 | WP_023316400.1 | hypothetical protein | - |
| N2J37_RS29775 (N2J37_29775) | 34115..34399 | + | 285 | WP_023316401.1 | hypothetical protein | - |
| N2J37_RS29780 (N2J37_29780) | 34423..34641 | + | 219 | WP_023316402.1 | hypothetical protein | - |
| N2J37_RS29785 (N2J37_29785) | 34642..34953 | + | 312 | WP_023316403.1 | hypothetical protein | - |
| N2J37_RS29790 (N2J37_29790) | 35020..35424 | + | 405 | WP_023340941.1 | hypothetical protein | - |
| N2J37_RS29795 (N2J37_29795) | 35421..35711 | + | 291 | WP_023340940.1 | hypothetical protein | - |
| N2J37_RS29800 (N2J37_29800) | 35719..36117 | + | 399 | WP_074186017.1 | hypothetical protein | - |
| N2J37_RS29805 (N2J37_29805) | 36189..38828 | + | 2640 | WP_060446930.1 | type IV secretion system protein TraC | - |
| N2J37_RS29810 (N2J37_29810) | 38828..39217 | + | 390 | WP_020314627.1 | type-F conjugative transfer system protein TrbI | - |
| N2J37_RS29815 (N2J37_29815) | 39217..39843 | + | 627 | WP_020314628.1 | type-F conjugative transfer system protein TraW | - |
| N2J37_RS29820 (N2J37_29820) | 39887..40846 | + | 960 | WP_029497356.1 | conjugal transfer pilus assembly protein TraU | - |
| N2J37_RS29825 (N2J37_29825) | 40859..41497 | + | 639 | WP_020321224.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| N2J37_RS29830 (N2J37_29830) | 41556..43511 | + | 1956 | WP_020803160.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| N2J37_RS29835 (N2J37_29835) | 43544..43825 | + | 282 | WP_022644736.1 | hypothetical protein | - |
| N2J37_RS29840 (N2J37_29840) | 43815..44042 | + | 228 | WP_012540032.1 | conjugal transfer protein TrbE | - |
| N2J37_RS29845 (N2J37_29845) | 44053..44379 | + | 327 | WP_020323521.1 | hypothetical protein | - |
| N2J37_RS29850 (N2J37_29850) | 44400..45152 | + | 753 | WP_023316406.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| N2J37_RS29855 (N2J37_29855) | 45607..45846 | + | 240 | WP_023316407.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| N2J37_RS29860 (N2J37_29860) | 45818..46375 | + | 558 | WP_020804677.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| N2J37_RS29865 (N2J37_29865) | 46421..46864 | + | 444 | WP_020804675.1 | F-type conjugal transfer protein TrbF | - |
| N2J37_RS29870 (N2J37_29870) | 46842..48221 | + | 1380 | WP_072198238.1 | conjugal transfer pilus assembly protein TraH | - |
| N2J37_RS29875 (N2J37_29875) | 48221..51064 | + | 2844 | WP_023316409.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| N2J37_RS29880 (N2J37_29880) | 51075..51524 | + | 450 | WP_260990879.1 | hypothetical protein | - |
| N2J37_RS29890 (N2J37_29890) | 52351..53082 | + | 732 | WP_004152629.1 | conjugal transfer complement resistance protein TraT | - |
| N2J37_RS29895 (N2J37_29895) | 53275..53964 | + | 690 | WP_023316411.1 | hypothetical protein | - |
| N2J37_RS29900 (N2J37_29900) | 54093..56402 | + | 2310 | WP_023313941.1 | type IV conjugative transfer system coupling protein TraD | - |
| N2J37_RS29905 (N2J37_29905) | 56402..61660 | + | 5259 | WP_040212835.1 | Multifunctional conjugation protein TraI | Relaxase |
| N2J37_RS29910 (N2J37_29910) | 61750..62475 | + | 726 | WP_032435740.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| N2J37_RS29915 (N2J37_29915) | 62630..63226 | + | 597 | WP_009309883.1 | fertility inhibition protein FinO | - |
| N2J37_RS29920 (N2J37_29920) | 63246..63593 | + | 348 | WP_009309884.1 | DUF6404 family protein | - |
| N2J37_RS29925 (N2J37_29925) | 64064..64708 | + | 645 | WP_009309885.1 | hypothetical protein | - |
| N2J37_RS29930 (N2J37_29930) | 64764..65414 | + | 651 | WP_009309886.1 | DUF2726 domain-containing protein | - |
| N2J37_RS29935 (N2J37_29935) | 65411..65722 | + | 312 | WP_009309887.1 | hypothetical protein | - |
| N2J37_RS29940 (N2J37_29940) | 65828..66379 | + | 552 | WP_029497507.1 | Cardiolipin synthase B | VF |
| N2J37_RS29945 (N2J37_29945) | 66498..66767 | + | 270 | WP_072196941.1 | replication regulatory protein RepA | - |
| N2J37_RS29950 (N2J37_29950) | 66867..67041 | + | 175 | Protein_82 | protein CopA/IncA | - |
| N2J37_RS29955 (N2J37_29955) | 67060..67917 | + | 858 | WP_009309890.1 | incFII family plasmid replication initiator RepA | - |
| N2J37_RS29960 (N2J37_29960) | 69202..70074 | + | 873 | WP_015632539.1 | serine protease | - |
| N2J37_RS29965 (N2J37_29965) | 70150..71187 | - | 1038 | WP_115190205.1 | IS630 family transposase ISAeme16 | Transposase |
| N2J37_RS29970 (N2J37_29970) | 71401..72396 | - | 996 | WP_003031929.1 | IS110 family transposase IS1663 | Transposase |
| N2J37_RS29975 (N2J37_29975) | 72548..73153 | - | 606 | WP_000509966.1 | Tn3 family transposase TnpR_Tn5403 | Transposase |
| N2J37_RS29980 (N2J37_29980) | 73248..76145 | + | 2898 | WP_023307208.1 | Tn3 family transposase TnpA_Tn5403 | Transposase |
| N2J37_RS29985 (N2J37_29985) | 76182..77009 | + | 828 | WP_004099046.1 | MFS transporter | - |
| N2J37_RS29990 (N2J37_29990) | 77040..77441 | - | 402 | WP_004099044.1 | RidA family protein | - |
| N2J37_RS29995 (N2J37_29995) | 77548..77997 | - | 450 | WP_004099042.1 | hypothetical protein | - |
| N2J37_RS30000 (N2J37_30000) | 78085..78657 | - | 573 | WP_047722653.1 | hypothetical protein | - |
| N2J37_RS30005 (N2J37_30005) | 78749..79717 | - | 969 | WP_002118270.1 | magnesium and cobalt transport protein CorA | - |
| N2J37_RS30010 (N2J37_30010) | 79714..80418 | - | 705 | WP_004099038.1 | glutathione S-transferase N-terminal domain-containing protein | - |
| N2J37_RS30015 (N2J37_30015) | 80551..81090 | - | 540 | WP_004099036.1 | Peptide methionine sulfoxide reductase MsrA 3 | VF |
| N2J37_RS30020 (N2J37_30020) | 81092..81535 | - | 444 | WP_004099035.1 | Peptide methionine sulfoxide reductase MsrB | VF |
| N2J37_RS30025 (N2J37_30025) | 81681..82556 | - | 876 | WP_011191349.1 | LysR family transcriptional regulator | - |
| N2J37_RS30030 (N2J37_30030) | 82785..84017 | + | 1233 | WP_004357650.1 | bifunctional alpha/beta hydrolase/OsmC family protein | - |
| N2J37_RS30035 (N2J37_30035) | 84125..84613 | + | 489 | WP_045269765.1 | Peptide methionine sulfoxide reductase MsrA | VF |
| N2J37_RS30040 (N2J37_30040) | 84613..85638 | + | 1026 | WP_004357654.1 | hypothetical protein | VF |
| N2J37_RS30045 (N2J37_30045) | 86035..86529 | - | 495 | WP_004099028.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| N2J37_RS30050 (N2J37_30050) | 86846..86956 | - | 111 | Protein_102 | ribose-5-phosphate isomerase A | - |
| N2J37_RS30055 (N2J37_30055) | 87087..87575 | - | 489 | WP_004099027.1 | DUF417 family protein | - |
| N2J37_RS30060 (N2J37_30060) | 87873..88232 | + | 360 | WP_166479491.1 | DUF6314 family protein | - |
| N2J37_RS30065 (N2J37_30065) | 88271..89230 | - | 960 | WP_004099025.1 | YeeE/YedE thiosulfate transporter family protein | - |
| N2J37_RS30070 (N2J37_30070) | 89257..89679 | - | 423 | WP_223296479.1 | MarR family transcriptional regulator | - |
| N2J37_RS30075 (N2J37_30075) | 90047..90943 | + | 897 | WP_011191354.1 | LysR family transcriptional regulator | - |
| N2J37_RS30080 (N2J37_30080) | 90940..91176 | - | 237 | WP_026227538.1 | DUF2274 domain-containing protein | - |
| N2J37_RS30085 (N2J37_30085) | 91179..92399 | - | 1221 | WP_011191355.1 | hypothetical protein | VF |
| N2J37_RS30090 (N2J37_30090) | 92396..93445 | - | 1050 | WP_011191356.1 | P-type conjugative transfer protein TrbG | - |
| N2J37_RS30095 (N2J37_30095) | 93442..93762 | - | 321 | Protein_111 | conjugal transfer protein TrbF | - |
| N2J37_RS30100 (N2J37_30100) | 94040..95044 | - | 1005 | WP_022542389.1 | IS110 family transposase IS4321 | Transposase |
| N2J37_RS30105 (N2J37_30105) | 95123..98077 | - | 2955 | WP_200928192.1 | Tn3 family transposase TnpA_ISPa38 | Transposase |
| N2J37_RS30110 (N2J37_30110) | 98107..98811 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| N2J37_RS30115 (N2J37_30115) | 99076..99366 | + | 291 | WP_001247892.1 | nucleotidyltransferase | - |
| N2J37_RS30120 (N2J37_30120) | 99363..99764 | + | 402 | WP_001293886.1 | DUF86 domain-containing protein | - |
| N2J37_RS30125 (N2J37_30125) | 99754..100110 | + | 357 | WP_003465043.1 | cupin domain-containing protein | - |
| N2J37_RS30130 (N2J37_30130) | 100365..100691 | + | 327 | WP_003100858.1 | hypothetical protein | - |
| N2J37_RS30135 (N2J37_30135) | 100688..101188 | + | 501 | WP_003100856.1 | hypothetical protein | - |
| N2J37_RS30140 (N2J37_30140) | 101185..101556 | + | 372 | WP_003100853.1 | hypothetical protein | - |
| N2J37_RS30145 (N2J37_30145) | 101550..102107 | + | 558 | WP_003100847.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| N2J37_RS30150 (N2J37_30150) | 102186..103190 | + | 1005 | WP_000427623.1 | IS110 family transposase IS4321R | Transposase |
| N2J37_RS30155 (N2J37_30155) | 103468..103611 | + | 144 | Protein_123 | SOS response-associated peptidase | - |
| N2J37_RS30160 (N2J37_30160) | 103838..104842 | + | 1005 | WP_044352188.1 | DUF4238 domain-containing protein | - |
| N2J37_RS30165 (N2J37_30165) | 104970..106502 | + | 1533 | WP_009310015.1 | IS3 family transposase ISKpn38 | Transposase |
| N2J37_RS30170 (N2J37_30170) | 106936..109446 | - | 2511 | WP_022644890.1 | S8 family peptidase | - |
| N2J37_RS30175 (N2J37_30175) | 109424..110464 | - | 1041 | WP_022644891.1 | ATP-binding protein | - |
| N2J37_RS30185 (N2J37_30185) | 112198..112524 | - | 327 | WP_015632484.1 | hypothetical protein | - |
| N2J37_RS30190 (N2J37_30190) | 112521..113249 | - | 729 | WP_022644893.1 | plasmid SOS inhibition protein A | - |
| N2J37_RS30195 (N2J37_30195) | 113246..113677 | - | 432 | WP_015632482.1 | conjugation system SOS inhibitor PsiB | - |
| N2J37_RS30200 (N2J37_30200) | 113722..115722 | - | 2001 | WP_022644894.1 | ParB/RepB/Spo0J family partition protein | - |
| N2J37_RS30205 (N2J37_30205) | 115791..116039 | - | 249 | WP_022644895.1 | DUF905 domain-containing protein | - |
| N2J37_RS30210 (N2J37_30210) | 116088..116630 | - | 543 | WP_022644896.1 | single-stranded DNA-binding protein | - |
| N2J37_RS30215 (N2J37_30215) | 117305..117625 | - | 321 | WP_022644897.1 | hypothetical protein | - |
| N2J37_RS30220 (N2J37_30220) | 117661..117915 | - | 255 | WP_025404029.1 | DNA polymerase III subunit theta | - |
| N2J37_RS30225 (N2J37_30225) | 118109..118300 | - | 192 | WP_022644899.1 | hypothetical protein | - |
| N2J37_RS30230 (N2J37_30230) | 118343..118849 | - | 507 | WP_022644900.1 | antirestriction protein ArdA | - |
| N2J37_RS30235 (N2J37_30235) | 118894..119322 | - | 429 | WP_022644901.1 | antirestriction protein | - |
| N2J37_RS30240 (N2J37_30240) | 120003..120770 | - | 768 | WP_032072058.1 | hypothetical protein | - |
| N2J37_RS30245 (N2J37_30245) | 120824..121243 | - | 420 | WP_022644903.1 | DUF1380 family protein | - |
| N2J37_RS30250 (N2J37_30250) | 121253..121474 | - | 222 | WP_022644904.1 | hypothetical protein | - |
| N2J37_RS30255 (N2J37_30255) | 121474..122175 | - | 702 | WP_001568041.1 | DNA methylase | - |
| N2J37_RS30260 (N2J37_30260) | 122247..122416 | - | 170 | Protein_144 | hypothetical protein | - |
| N2J37_RS30265 (N2J37_30265) | 122612..122842 | - | 231 | WP_001568040.1 | hypothetical protein | - |
| N2J37_RS30270 (N2J37_30270) | 122904..123575 | - | 672 | WP_022644880.1 | plasmid partitioning/stability family protein | - |
| N2J37_RS30275 (N2J37_30275) | 123578..124549 | - | 972 | WP_001568038.1 | plasmid segregation protein ParM | - |
| N2J37_RS30280 (N2J37_30280) | 124798..126285 | - | 1488 | WP_162272086.1 | group II intron reverse transcriptase/maturase | - |
| N2J37_RS30285 (N2J37_30285) | 126692..127123 | + | 432 | WP_001568036.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| N2J37_RS30290 (N2J37_30290) | 127123..128394 | + | 1272 | WP_004197646.1 | Y-family DNA polymerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|