MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 104929 bp
Accession: NZ_CP104354 Location: 1124504..1229432 Organism: Vibrio cholerae strain PNUSAV001140 Replicon: chromosome
Accession: NZ_CP104354 Location: 1124504..1229432 Organism: Vibrio cholerae strain PNUSAV001140 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N4267_RS05230 (N4267_05230) | 1120925..1121326 | + | 402 | WP_260813148.1 | thiol-disulfide oxidoreductase DCC family protein | - |
| N4267_RS05235 (N4267_05235) | 1121596..1123386 | - | 1791 | WP_134987193.1 | hypothetical protein | - |
| N4267_RS05240 (N4267_05240) | 1123721..1124194 | + | 474 | WP_000410961.1 | NYN domain-containing protein | - |
| N4267_RS05245 (N4267_05245) | 1124186..1124389 | - | 204 | WP_001080333.1 | DUF2986 domain-containing protein | - |
| N4267_RS05250 (N4267_05250) | 1124686..1125333 | - | 648 | WP_001896308.1 | LexA family transcriptional regulator | - |
| N4267_RS05255 (N4267_05255) | 1125451..1125702 | + | 252 | WP_000451746.1 | helix-turn-helix domain-containing protein | - |
| N4267_RS05260 (N4267_05260) | 1125758..1126627 | + | 870 | WP_001896387.1 | hypothetical protein | - |
| N4267_RS05265 (N4267_05265) | 1126614..1127276 | + | 663 | WP_001896370.1 | DUF6475 domain-containing protein | - |
| N4267_RS05270 (N4267_05270) | 1127263..1127811 | + | 549 | WP_001896330.1 | lytic transglycosylase domain-containing protein | - |
| N4267_RS05275 (N4267_05275) | 1127808..1128107 | + | 300 | WP_000210563.1 | flagellar transcriptional regulator FlhD | - |
| N4267_RS05280 (N4267_05280) | 1128104..1128637 | + | 534 | WP_134987192.1 | FlhC family transcriptional regulator | - |
| N4267_RS05285 (N4267_05285) | 1128692..1129123 | + | 432 | WP_134987191.1 | entry exclusion protein EexR | - |
| N4267_RS05290 (N4267_05290) | 1129277..1129546 | - | 270 | WP_134987190.1 | hypothetical protein | - |
| N4267_RS05295 (N4267_05295) | 1129549..1130523 | - | 975 | WP_001896335.1 | ParM/StbA family protein | - |
| N4267_RS05300 (N4267_05300) | 1130993..1131418 | + | 426 | WP_134987189.1 | conjugative transfer protein MobI(A/C) | - |
| N4267_RS05305 (N4267_05305) | 1131506..1131972 | - | 467 | Protein_1018 | DNA polymerase V subunit UmuC | - |
| N4267_RS05310 (N4267_05310) | 1131941..1132390 | - | 450 | WP_001896356.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| N4267_RS05315 (N4267_05315) | 1132389..1132646 | + | 258 | WP_032468030.1 | hypothetical protein | - |
| N4267_RS05320 (N4267_05320) | 1133100..1134006 | - | 907 | Protein_1021 | IS5 family transposase | - |
| N4267_RS05325 (N4267_05325) | 1134249..1136399 | + | 2151 | WP_001961080.1 | MobH family relaxase | - |
| N4267_RS05330 (N4267_05330) | 1136448..1138268 | + | 1821 | WP_032468029.1 | conjugative transfer system coupling protein TraD | - |
| N4267_RS05335 (N4267_05335) | 1138278..1138838 | + | 561 | WP_001896321.1 | hypothetical protein | - |
| N4267_RS05340 (N4267_05340) | 1138825..1139460 | + | 636 | WP_001896322.1 | DUF4400 domain-containing protein | - |
| N4267_RS05345 (N4267_05345) | 1139486..1139764 | - | 279 | WP_000058216.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| N4267_RS05350 (N4267_05350) | 1139761..1140084 | - | 324 | WP_001896384.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| N4267_RS05355 (N4267_05355) | 1140265..1140546 | + | 282 | WP_000433891.1 | type IV conjugative transfer system protein TraL | - |
| N4267_RS05360 (N4267_05360) | 1140543..1141169 | + | 627 | WP_001896361.1 | TraE/TraK family type IV conjugative transfer system protein | - |
| N4267_RS05365 (N4267_05365) | 1141153..1142049 | + | 897 | WP_001896336.1 | type-F conjugative transfer system secretin TraK | - |
| N4267_RS05370 (N4267_05370) | 1142052..1143341 | + | 1290 | WP_134987188.1 | TraB/VirB10 family protein | - |
| N4267_RS05375 (N4267_05375) | 1143416..1143988 | + | 573 | WP_147422779.1 | type IV conjugative transfer system lipoprotein TraV | - |
| N4267_RS05380 (N4267_05380) | 1143985..1144371 | + | 387 | WP_001896311.1 | TraA family conjugative transfer protein | - |
| N4267_RS05385 (N4267_05385) | 1144591..1145382 | + | 792 | WP_001896349.1 | type IV toxin-antitoxin system AbiEi family antitoxin | Antitoxin Detail |
| N4267_RS05390 (N4267_05390) | 1145375..1146313 | + | 939 | WP_001961076.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| N4267_RS05395 (N4267_05395) | 1146836..1147492 | - | 657 | WP_001896334.1 | hypothetical protein | - |
| N4267_RS05400 (N4267_05400) | 1147536..1147682 | - | 147 | WP_162838621.1 | hypothetical protein | - |
| N4267_RS05405 (N4267_05405) | 1147924..1148616 | + | 693 | WP_001896353.1 | DsbC family protein | - |
| N4267_RS05410 (N4267_05410) | 1148616..1151015 | + | 2400 | WP_001896378.1 | type IV secretion system protein TraC | - |
| N4267_RS05415 (N4267_05415) | 1151008..1151355 | + | 348 | WP_001896342.1 | hypothetical protein | - |
| N4267_RS05420 (N4267_05420) | 1151339..1151851 | + | 513 | WP_230611458.1 | S26 family signal peptidase | - |
| N4267_RS05425 (N4267_05425) | 1151862..1152986 | + | 1125 | WP_032468028.1 | TrbC family F-type conjugative pilus assembly protein | - |
| N4267_RS05430 (N4267_05430) | 1152970..1153998 | + | 1029 | WP_001896307.1 | TraU family protein | - |
| N4267_RS05435 (N4267_05435) | 1154001..1157699 | + | 3699 | WP_001896298.1 | conjugal transfer protein TraN | - |
| N4267_RS05440 (N4267_05440) | 1157901..1158284 | + | 384 | WP_230611380.1 | tetratricopeptide repeat protein | - |
| N4267_RS05445 (N4267_05445) | 1158256..1159059 | + | 804 | WP_260813183.1 | surface lipoprotein assembly modifier | - |
| N4267_RS05450 (N4267_05450) | 1159073..1159918 | + | 846 | WP_001896368.1 | hypothetical protein | - |
| N4267_RS05455 (N4267_05455) | 1160590..1161396 | + | 807 | Protein_1048 | ABC transporter substrate-binding protein | - |
| N4267_RS05460 (N4267_05460) | 1161428..1161822 | + | 395 | Protein_1049 | IS630 family transposase ISVa15 | Transposase |
| N4267_RS05465 (N4267_05465) | 1161894..1163074 | + | 1181 | WP_134987186.1 | IS3 family transposase ISAlg | Transposase |
| N4267_RS05470 (N4267_05470) | 1163085..1163669 | + | 585 | Protein_1051 | IS630 family transposase ISVch6 | Transposase |
| N4267_RS05475 (N4267_05475) | 1164270..1165229 | + | 960 | WP_134987185.1 | IS30 family transposase ISVvu6 | Transposase |
| N4267_RS05480 (N4267_05480) | 1165678..1170066 | + | 4389 | WP_001960585.1 | hypothetical protein | VF |
| N4267_RS05485 (N4267_05485) | 1170133..1170687 | + | 555 | WP_060780273.1 | outer membrane beta-barrel protein | - |
| N4267_RS05490 (N4267_05490) | 1170779..1170960 | + | 182 | Protein_1055 | IS200-IS605 family transposase IS1004 | Transposase |
| N4267_RS05495 (N4267_05495) | 1171129..1171260 | + | 132 | Protein_1056 | IS200/IS605 family transposase | - |
| N4267_RS05500 (N4267_05500) | 1171344..1171973 | - | 630 | WP_043989504.1 | AcfA family outer membrane beta-barrel protein | - |
| N4267_RS05505 (N4267_05505) | 1171970..1172359 | - | 390 | WP_043989505.1 | hypothetical protein | - |
| N4267_RS05510 (N4267_05510) | 1172846..1173016 | + | 171 | WP_154581783.1 | hypothetical protein | - |
| N4267_RS05515 (N4267_05515) | 1173302..1173685 | + | 384 | WP_134987184.1 | hydroxyisourate hydrolase | - |
| N4267_RS05520 (N4267_05520) | 1173701..1174213 | + | 513 | WP_001896328.1 | heme-binding protein | - |
| N4267_RS05525 (N4267_05525) | 1174523..1176616 | + | 2094 | WP_260813149.1 | hypothetical protein | VF |
| N4267_RS05530 (N4267_05530) | 1176957..1177742 | - | 786 | WP_001961032.1 | alpha/beta hydrolase | - |
| N4267_RS05535 (N4267_05535) | 1178718..1179446 | + | 729 | WP_134987183.1 | Toxin coregulated pilin | VF |
| N4267_RS05540 (N4267_05540) | 1179498..1181033 | + | 1536 | WP_134987182.1 | type II secretion system protein | - |
| N4267_RS05545 (N4267_05545) | 1181052..1181423 | + | 372 | WP_001896371.1 | TcpQ domain-containing protein | - |
| N4267_RS05550 (N4267_05550) | 1181430..1182890 | + | 1461 | WP_134987181.1 | type II and III secretion system protein | - |
| N4267_RS05555 (N4267_05555) | 1182892..1183431 | + | 540 | WP_134987180.1 | hypothetical protein | - |
| N4267_RS05560 (N4267_05560) | 1183428..1184261 | + | 834 | WP_260813150.1 | pilus assembly protein | - |
| N4267_RS05565 (N4267_05565) | 1184249..1184782 | + | 534 | WP_134987179.1 | hypothetical protein | - |
| N4267_RS05570 (N4267_05570) | 1184784..1186316 | + | 1533 | WP_001896291.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| N4267_RS05575 (N4267_05575) | 1186303..1187328 | + | 1026 | WP_032468019.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| N4267_RS05580 (N4267_05580) | 1187329..1188093 | + | 765 | WP_260813151.1 | Type 4 prepilin-like proteins leader peptide-processing enzyme | VF |
| N4267_RS05585 (N4267_05585) | 1188168..1188845 | + | 678 | WP_134987178.1 | helix-turn-helix domain-containing protein | - |
| N4267_RS05590 (N4267_05590) | 1188811..1189221 | + | 411 | WP_032468018.1 | hypothetical protein | - |
| N4267_RS05595 (N4267_05595) | 1189537..1190106 | + | 570 | WP_260813152.1 | AraC family transcriptional regulator | - |
| N4267_RS05600 (N4267_05600) | 1190111..1190830 | + | 720 | WP_260813153.1 | hypothetical protein | - |
| N4267_RS05605 (N4267_05605) | 1190859..1191608 | + | 750 | WP_134987176.1 | hypothetical protein | VF |
| N4267_RS05610 (N4267_05610) | 1191709..1192731 | + | 1023 | WP_134987175.1 | hypothetical protein | - |
| N4267_RS05615 (N4267_05615) | 1192862..1195783 | - | 2922 | WP_134987174.1 | Metalloprotease StcE | VF |
| N4267_RS05620 (N4267_05620) | 1195859..1196263 | - | 405 | WP_260813154.1 | CZB domain-containing protein | - |
| N4267_RS05625 (N4267_05625) | 1196453..1196842 | - | 390 | WP_260813155.1 | NirD/YgiW/YdeI family stress tolerance protein | - |
| N4267_RS05630 (N4267_05630) | 1197095..1197901 | + | 807 | WP_134987173.1 | AraC family transcriptional regulator | - |
| N4267_RS05635 (N4267_05635) | 1197961..1198443 | - | 483 | WP_134987172.1 | hypothetical protein | - |
| N4267_RS05640 (N4267_05640) | 1198430..1199191 | - | 762 | WP_134987171.1 | hypothetical protein | VF |
| N4267_RS05645 (N4267_05645) | 1199364..1202429 | - | 3066 | WP_134987170.1 | efflux RND transporter permease subunit | - |
| N4267_RS05650 (N4267_05650) | 1202434..1203519 | - | 1086 | WP_001896296.1 | efflux RND transporter periplasmic adaptor subunit | - |
| N4267_RS05655 (N4267_05655) | 1203630..1204268 | + | 639 | WP_260813156.1 | TetR/AcrR family transcriptional regulator | - |
| N4267_RS05660 (N4267_05660) | 1204348..1206153 | - | 1806 | WP_001897790.1 | NAD(+)--arginine ADP-ribosyltransferase Chelt | VF |
| N4267_RS05665 (N4267_05665) | 1206573..1207480 | + | 908 | Protein_1090 | IS5 family transposase | - |
| N4267_RS05670 (N4267_05670) | 1207517..1207789 | + | 273 | Protein_1091 | N-acetylneuraminic acid mutarotase | - |
| N4267_RS05675 (N4267_05675) | 1207890..1208516 | - | 627 | WP_032467872.1 | heme-binding beta-barrel domain-containing protein | - |
| N4267_RS05680 (N4267_05680) | 1208883..1209488 | - | 606 | WP_057567767.1 | hypothetical protein | - |
| N4267_RS05685 (N4267_05685) | 1209856..1210176 | + | 321 | WP_134987169.1 | plasmid-related protein | - |
| N4267_RS05690 (N4267_05690) | 1210192..1210611 | + | 420 | WP_069730630.1 | single-stranded DNA-binding protein | - |
| N4267_RS05695 (N4267_05695) | 1210691..1211509 | + | 819 | WP_000414662.1 | phage recombination protein Bet | - |
| N4267_RS05700 (N4267_05700) | 1211591..1211734 | + | 144 | WP_230611524.1 | hypothetical protein | - |
| N4267_RS05705 (N4267_05705) | 1211795..1212811 | + | 1017 | WP_032475122.1 | YqaJ viral recombinase family protein | - |
| N4267_RS05710 (N4267_05710) | 1213021..1213980 | + | 960 | WP_134987168.1 | CbbQ/NirQ/NorQ C-terminal domain-containing protein | - |
| N4267_RS05715 (N4267_05715) | 1213980..1214747 | + | 768 | WP_134987167.1 | hypothetical protein | - |
| N4267_RS05720 (N4267_05720) | 1214846..1215799 | + | 954 | WP_032475126.1 | DUF3150 domain-containing protein | - |
| N4267_RS05725 (N4267_05725) | 1215861..1216301 | + | 441 | WP_032475127.1 | hypothetical protein | - |
| N4267_RS05730 (N4267_05730) | 1216371..1218026 | + | 1656 | WP_134987166.1 | VWA domain-containing protein | - |
| N4267_RS05735 (N4267_05735) | 1218109..1218606 | + | 498 | WP_000797298.1 | DNA repair protein RadC | - |
| N4267_RS05740 (N4267_05740) | 1218606..1218947 | + | 342 | WP_001897811.1 | hypothetical protein | - |
| N4267_RS05745 (N4267_05745) | 1219038..1220105 | + | 1068 | WP_001897813.1 | primase-helicase zinc-binding domain-containing protein | - |
| N4267_RS05750 (N4267_05750) | 1220195..1220899 | + | 705 | Protein_1107 | hypothetical protein | - |
| N4267_RS05755 (N4267_05755) | 1220992..1221936 | + | 945 | WP_032475130.1 | thioredoxin family protein | - |
| N4267_RS05760 (N4267_05760) | 1221939..1223327 | + | 1389 | WP_001959185.1 | conjugal transfer protein TraH | - |
| N4267_RS05765 (N4267_05765) | 1223331..1226900 | + | 3570 | WP_001959183.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| N4267_RS05770 (N4267_05770) | 1227073..1227345 | - | 273 | Protein_1111 | IS481 family transposase ISVvu4 | Transposase |
| N4267_RS05775 (N4267_05775) | 1227584..1227772 | - | 189 | WP_063124234.1 | AlpA family transcriptional regulator | - |
| N4267_RS05780 (N4267_05780) | 1227855..1229087 | - | 1233 | WP_001897809.1 | Prophage integrase IntA ; Integrase | Integrase |
| N4267_RS05790 (N4267_05790) | 1229718..1232768 | - | 3051 | WP_134987165.1 | efflux RND transporter permease subunit VexD | - |
| N4267_RS05795 (N4267_05795) | 1232768..1233862 | - | 1095 | WP_134987164.1 | multidrug efflux RND transporter periplasmic adaptor subunit VexC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|