MGE detailed information
MGE type: Genomic_island MGE length: 31881 bp
Accession: NZ_CP104330 Location: 1098334..1130214 Organism: Escherichia coli strain THB42-F3 Replicon: chromosome
Accession: NZ_CP104330 Location: 1098334..1130214 Organism: Escherichia coli strain THB42-F3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N0544_RS05280 (1094518) | 1094518..1095786 | - | 1269 | WP_000271909.1 | L-2-hydroxyglutarate oxidase | - |
| N0544_RS05285 (1095806) | 1095806..1096783 | - | 978 | WP_000993126.1 | glutarate dioxygenase GlaH | - |
| N0544_RS05290 (1097119) | 1097119..1099371 | - | 2253 | Protein_1032 | alpha-amylase family glycosyl hydrolase | - |
| N0544_RS05300 (1100757) | 1100757..1102130 | + | 1374 | Protein_1033 | DUF5507 domain-containing protein | - |
| N0544_RS05305 (1102476) | 1102476..1102634 | + | 159 | Protein_1034 | recombinase family protein | - |
| N0544_RS05310 (1102858) | 1102858..1102977 | + | 120 | WP_001120794.1 | hypothetical protein | - |
| N0544_RS05315 (1103042) | 1103042..1107622 | + | 4581 | WP_010723187.1 | putative autotransporter | VF |
| N0544_RS05320 (1107986) | 1107986..1108315 | - | 330 | WP_001094400.1 | type IV toxin-antitoxin system toxin YpjF | Toxin Detail |
| N0544_RS05325 (1108336) | 1108336..1108653 | - | 318 | WP_000072690.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| N0544_RS05330 (1108691) | 1108691..1108891 | - | 201 | WP_001395452.1 | DUF987 domain-containing protein | - |
| N0544_RS05335 (1108900) | 1108900..1109382 | - | 483 | WP_001407480.1 | RadC family protein | - |
| N0544_RS05340 (1109391) | 1109391..1109849 | - | 459 | WP_000211841.1 | antirestriction protein | - |
| N0544_RS05345 (1109952) | 1109952..1110136 | - | 185 | Protein_1042 | DUF905 domain-containing protein | - |
| N0544_RS05350 (1110747) | 1110747..1112450 | - | 1704 | WP_000896263.1 | protein YfjW | - |
| N0544_RS05355 (1112592) | 1112592..1113601 | + | 1010 | Protein_1044 | arsenic transporter | - |
| N0544_RS05360 (1113614) | 1113614..1113766 | + | 153 | Protein_1045 | arsenate reductase | - |
| N0544_RS05365 (1114153) | 1114153..1114620 | - | 468 | WP_000702495.1 | protein YfjT | - |
| N0544_RS05370 (1114644) | 1114644..1115087 | - | 444 | WP_000824222.1 | lipoprotein YfjS | - |
| N0544_RS05375 (1115087) | 1115087..1115323 | - | 237 | WP_001144029.1 | protein YpjK | - |
| N0544_RS05380 (1115364) | 1115364..1116065 | - | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| N0544_RS05385 (1116282) | 1116282..1117103 | - | 822 | WP_000197391.1 | DUF932 domain-containing protein | - |
| N0544_RS05390 (1117195) | 1117195..1118058 | - | 864 | WP_000787597.1 | GTPase family protein | - |
| N0544_RS05395 (1118413) | 1118413..1118784 | - | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin Detail |
| N0544_RS05400 (1118777) | 1118777..1119850 | - | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin Detail |
| N0544_RS05405 (1119992) | 1119992..1120255 | + | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| N0544_RS05410 (1120615) | 1120615..1122231 | + | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| N0544_RS05415 (1122228) | 1122228..1124417 | + | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| N0544_RS05420 (1124595) | 1124595..1125221 | - | 627 | WP_000220524.1 | inovirus Gp2 family protein | - |
| N0544_RS05425 (1125374) | 1125374..1126783 | - | 1410 | WP_000481742.1 | YfjI family protein | - |
| N0544_RS05430 (1126912) | 1126912..1127124 | - | 213 | WP_001065343.1 | DNA-binding transcriptional activator AlpA | - |
| N0544_RS05435 (1127168) | 1127168..1128124 | + | 957 | WP_000510827.1 | protein YfjH | - |
| N0544_RS05440 (1128368) | 1128368..1129609 | - | 1242 | WP_000101723.1 | Prophage integrase IntA ; Integrase | Integrase |
| N0544_RS05450 (1130390) | 1130390..1130872 | - | 483 | WP_000162574.1 | SsrA-binding protein SmpB | - |
| N0544_RS05455 (1131043) | 1131043..1131480 | + | 438 | WP_001300750.1 | type II toxin-antitoxin system toxin RatA | - |
| N0544_RS05460 (1131470) | 1131470..1131760 | + | 291 | WP_001117838.1 | RnfH family protein | - |
| N0544_RS05465 (1131822) | 1131822..1132163 | - | 342 | WP_001203437.1 | outer membrane protein assembly factor BamE | - |
| N0544_RS05470 (1132312) | 1132312..1133973 | - | 1662 | WP_000880910.1 | DNA repair protein RecN | - |
| N0544_RS05475 (1134059) | 1134059..1134937 | - | 879 | WP_001059169.1 | NAD(+) kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20085, TA20086 | HG738867 | 3996347..4028227 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285030, TA285031 | NZ_HG738867 | 3996347..4028227 | 0 |