MGE detailed information
MGE type: Prophage MGE length: 21707 bp
Accession: NZ_CP104328 Location: 2227055..2248761 Organism: Escherichia coli strain THB42-F2 Replicon: chromosome
Accession: NZ_CP104328 Location: 2227055..2248761 Organism: Escherichia coli strain THB42-F2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N0499_RS10695 (2222306) | 2222306..2223016 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| N0499_RS10700 (2223019) | 2223019..2223579 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| N0499_RS10705 (2223614) | 2223614..2223955 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| N0499_RS10710 (2224090) | 2224090..2224416 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| N0499_RS10715 (2224622) | 2224622..2225836 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| N0499_RS10720 (2225848) | 2225848..2226867 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| N0499_RS10725 (2227055) | 2227055..2228212 | - | 1158 | Protein_2093 | Tyrosine recombinase XerD ; Integrase | Integrase |
| N0499_RS10730 (2228226) | 2228226..2228921 | - | 696 | Protein_2094 | IS3 family transposase IS2 | Transposase |
| N0499_RS10735 (2228918) | 2228918..2229685 | - | 768 | Protein_2095 | exonuclease | - |
| N0499_RS10740 (2229778) | 2229778..2229969 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| N0499_RS10745 (2229966) | 2229966..2230154 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| N0499_RS10750 (2230722) | 2230722..2230940 | - | 219 | WP_001171942.1 | protein YdfC | - |
| N0499_RS10755 (2230970) | 2230970..2231098 | - | 129 | WP_000344964.1 | protein YdfB | - |
| N0499_RS10760 (2231100) | 2231100..2231255 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| N0499_RS10765 (2231422) | 2231422..2231829 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| N0499_RS10770 (2231913) | 2231913..2232143 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| N0499_RS10775 (2232127) | 2232127..2232405 | + | 279 | Protein_2103 | hypothetical protein | - |
| N0499_RS10780 (2232440) | 2232440..2232589 | + | 150 | WP_011443592.1 | protein YdfW | - |
| N0499_RS10785 (2233026) | 2233026..2233358 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| N0499_RS10790 (2233561) | 2233561..2233866 | - | 306 | WP_001326990.1 | protein YdfV | - |
| N0499_RS10795 (2233891) | 2233891..2234130 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| N0499_RS10800 (2234130) | 2234130..2234417 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| N0499_RS10805 (2234489) | 2234489..2234644 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| N0499_RS10810 (2234861) | 2234861..2235112 | + | 252 | WP_000980994.1 | protein Rem | - |
| N0499_RS10815 (2235179) | 2235179..2235457 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| N0499_RS10820 (2235459) | 2235459..2236508 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| N0499_RS10825 (2236522) | 2236522..2237274 | + | 753 | WP_001047135.1 | antitermination protein | - |
| N0499_RS10830 (2237552) | 2237552..2237641 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| N0499_RS10835 (2237696) | 2237696..2237908 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| N0499_RS10840 (2238209) | 2238209..2238424 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| N0499_RS10845 (2238788) | 2238788..2238958 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| N0499_RS10850 (2239178) | 2239178..2239393 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| N0499_RS10855 (2239398) | 2239398..2239709 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| N0499_RS10860 (2239706) | 2239706..2240239 | + | 534 | WP_001092971.1 | lysozyme | - |
| N0499_RS10865 (2240236) | 2240236..2240733 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| N0499_RS10870 (2241096) | 2241096..2241308 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| N0499_RS10875 (2241319) | 2241319..2241507 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| N0499_RS10880 (2241510) | 2241510..2241575 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| N0499_RS10885 (2241654) | 2241654..2241809 | + | 156 | WP_001309517.1 | protein YnfN | - |
| N0499_RS10890 (2241981) | 2241981..2242154 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| N0499_RS10895 (2242306) | 2242306..2242716 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| N0499_RS10900 (2242774) | 2242774..2243007 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| N0499_RS10905 (2243396) | 2243396..2243965 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| N0499_RS10910 (2243916) | 2243916..2244878 | + | 963 | WP_001027733.1 | phage tail protein | - |
| N0499_RS10915 (2244878) | 2244878..2245453 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| N0499_RS10920 (2245551) | 2245551..2246141 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| N0499_RS10925 (2246458) | 2246458..2246691 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| N0499_RS10930 (2246760) | 2246760..2246873 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| N0499_RS10935 (2247394) | 2247394..2248761 | + | 1368 | Protein_2135 | MHS family MFS transporter | - |
| N0499_RS10940 (2248850) | 2248850..2250310 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| N0499_RS10945 (2250345) | 2250345..2250548 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| N0499_RS10950 (2250725) | 2250725..2251411 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| N0499_RS10955 (2251500) | 2251500..2252246 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.002 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0 |