MGE detailed information
MGE type: Prophage MGE length: 52712 bp
Accession: NZ_CP103864 Location: 4971060..5023771 Organism: Escherichia coli O157:H7 strain RV06 Replicon: chromosome
Accession: NZ_CP103864 Location: 4971060..5023771 Organism: Escherichia coli O157:H7 strain RV06 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NUE47_RS24530 (4966115) | 4966115..4966495 | + | 381 | WP_001171554.1 | transposase | - |
| NUE47_RS24535 (4966492) | 4966492..4966839 | + | 348 | WP_000612591.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| NUE47_RS24540 (4966889) | 4966889..4968427 | + | 1539 | WP_000998048.1 | IS66-like element ISEc8 family transposase | - |
| NUE47_RS24545 (4968465) | 4968465..4968860 | - | 396 | Protein_4786 | IS256 family transposase | - |
| NUE47_RS24550 (4969010) | 4969010..4969660 | - | 651 | WP_001121225.1 | type III secretion system effector NleG7 | - |
| NUE47_RS24555 (4970371) | 4970371..4970901 | - | 531 | WP_044386033.1 | DUF1076 domain-containing protein | - |
| NUE47_RS24560 (4971060) | 4971060..4971329 | - | 270 | WP_001023362.1 | phage tail fiber C-terminal domain-containing protein | - |
| NUE47_RS24565 (4971331) | 4971331..4972554 | - | 1224 | WP_000268860.1 | prophage tail fiber N-terminal domain-containing protein | - |
| NUE47_RS24570 (4972619) | 4972619..4973218 | - | 600 | WP_001230508.1 | Outer membrane protein X | VF |
| NUE47_RS24575 (4973286) | 4973286..4976760 | - | 3475 | Protein_4792 | host specificity protein J | - |
| NUE47_RS24580 (4977102) | 4977102..4977683 | - | 582 | WP_001089999.1 | tail assembly protein | - |
| NUE47_RS24585 (4977680) | 4977680..4978423 | - | 744 | WP_000194720.1 | C40 family peptidase | - |
| NUE47_RS24590 (4978434) | 4978434..4979132 | - | 699 | WP_070080222.1 | phage minor tail protein L | - |
| NUE47_RS24595 (4979132) | 4979132..4979473 | - | 342 | WP_000807954.1 | phage tail protein | - |
| NUE47_RS24600 (4979466) | 4979466..4982708 | - | 3243 | WP_260655078.1 | phage tail tape measure protein | - |
| NUE47_RS24605 (4982756) | 4982756..4982965 | - | 210 | WP_001453746.1 | DUF4035 domain-containing protein | - |
| NUE47_RS24610 (4983061) | 4983061..4983435 | - | 375 | WP_000710952.1 | phage tail assembly chaperone | - |
| NUE47_RS24615 (4983450) | 4983450..4984166 | - | 717 | WP_001275434.1 | major tail subunit | - |
| NUE47_RS24620 (4984232) | 4984232..4984576 | - | 345 | WP_000133388.1 | DUF3168 domain-containing protein | - |
| NUE47_RS24625 (4984573) | 4984573..4985019 | - | 447 | WP_000573391.1 | HK97 gp10 family phage protein | - |
| NUE47_RS24630 (4985016) | 4985016..4985366 | - | 351 | WP_001007905.1 | phage head closure protein | - |
| NUE47_RS24635 (4985376) | 4985376..4985702 | - | 327 | WP_000125988.1 | head-tail connector protein | - |
| NUE47_RS24640 (4985705) | 4985705..4988284 | - | 2580 | WP_001304108.1 | phage portal protein | - |
| NUE47_RS24645 (4988230) | 4988230..4988451 | - | 222 | WP_001063094.1 | hypothetical protein | - |
| NUE47_RS24650 (4988496) | 4988496..4990433 | - | 1938 | WP_000173030.1 | phage major capsid protein | - |
| NUE47_RS24655 (4990497) | 4990497..4992158 | - | 1662 | WP_001301491.1 | terminase large subunit | - |
| NUE47_RS24660 (4992155) | 4992155..4992718 | - | 564 | WP_000958416.1 | terminase small subunit | - |
| NUE47_RS24665 (4993008) | 4993008..4993373 | - | 366 | WP_000279786.1 | HNH endonuclease | - |
| NUE47_RS24670 (4993415) | 4993415..4993642 | + | 228 | WP_000095736.1 | YlcI/YnfO family protein | - |
| NUE47_RS24675 (4994067) | 4994067..4994252 | - | 186 | WP_012816791.1 | Rz1 family lipoprotein | - |
| NUE47_RS24680 (4994480) | 4994480..4994626 | - | 147 | WP_000539792.1 | hypothetical protein | - |
| NUE47_RS24685 (4994626) | 4994626..4995195 | - | 570 | WP_001056806.1 | phage antirepressor N-terminal domain-containing protein | - |
| NUE47_RS24690 (4995466) | 4995466..4995999 | - | 534 | WP_000992137.1 | lysozyme | - |
| NUE47_RS24695 (4996050) | 4996050..4996394 | - | 345 | WP_000731259.1 | YdfR family protein | - |
| NUE47_RS24700 (4996399) | 4996399..4996614 | - | 216 | WP_024180155.1 | class II holin family protein | - |
| NUE47_RS24705 (4997054) | 4997054..4998904 | - | 1851 | WP_000023202.1 | SASA family carbohydrate esterase | - |
| NUE47_RS24710 (4998881) | 4998881..4999024 | + | 144 | Protein_4819 | hypothetical protein | - |
| NUE47_RS24715 (4999219) | 4999219..4999386 | - | 168 | WP_000216653.1 | DUF3927 family protein | - |
| NUE47_RS24720 (4999383) | 4999383..4999811 | - | 429 | WP_001303509.1 | tellurite resistance protein | - |
| NUE47_RS24740 (5000451) | 5000451..5001140 | - | 690 | WP_001059381.1 | bacteriophage antitermination protein Q | - |
| NUE47_RS24745 (5001137) | 5001137..5001496 | - | 360 | WP_001217455.1 | RusA family crossover junction endodeoxyribonuclease | - |
| NUE47_RS24750 (5001509) | 5001509..5002558 | - | 1050 | WP_001265161.1 | DUF968 domain-containing protein | - |
| NUE47_RS24755 (5002560) | 5002560..5002838 | - | 279 | WP_012779366.1 | hypothetical protein | - |
| NUE47_RS24760 (5003006) | 5003006..5003161 | - | 156 | WP_001303917.1 | type I toxin-antitoxin system toxin HokD | - |
| NUE47_RS24765 (5003407) | 5003407..5003511 | - | 105 | WP_001278450.1 | hypothetical protein | - |
| NUE47_RS24770 (5003627) | 5003627..5004211 | - | 585 | WP_000206793.1 | DUF551 domain-containing protein | - |
| NUE47_RS24775 (5004268) | 5004268..5004663 | - | 396 | WP_001118159.1 | DUF977 family protein | - |
| NUE47_RS24780 (5004679) | 5004679..5005448 | - | 770 | Protein_4830 | DUF1627 domain-containing protein | - |
| NUE47_RS24785 (5005474) | 5005474..5006214 | - | 741 | WP_000788938.1 | ATP-binding protein | - |
| NUE47_RS24790 (5006221) | 5006221..5007183 | - | 963 | WP_000095669.1 | helix-turn-helix domain-containing protein | - |
| NUE47_RS24795 (5007206) | 5007206..5007631 | - | 426 | WP_000693943.1 | toxin YdaT family protein | - |
| NUE47_RS24800 (5007628) | 5007628..5007930 | - | 303 | WP_000172738.1 | transcriptional regulator | - |
| NUE47_RS24805 (5008028) | 5008028..5008399 | + | 372 | WP_001169686.1 | hypothetical protein | - |
| NUE47_RS24810 (5008420) | 5008420..5008611 | + | 192 | WP_001302048.1 | hypothetical protein | Antitoxin Detail |
| NUE47_RS24815 (5008613) | 5008613..5008891 | + | 279 | WP_001303511.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| NUE47_RS24820 (5009244) | 5009244..5009543 | + | 300 | WP_001240334.1 | hypothetical protein | - |
| NUE47_RS24825 (5009615) | 5009615..5009833 | + | 219 | WP_001171930.1 | protein YdfC | - |
| NUE47_RS24830 (5010402) | 5010402..5010590 | + | 189 | WP_000449192.1 | cell division inhibition protein DicB | - |
| NUE47_RS24835 (5010587) | 5010587..5010778 | + | 192 | WP_001090200.1 | DUF1482 family protein | - |
| NUE47_RS24840 (5010871) | 5010871..5013342 | + | 2472 | WP_000048458.1 | exonuclease | - |
| NUE47_RS24845 (5013415) | 5013415..5013666 | + | 252 | WP_000005552.1 | excisionase family protein | - |
| NUE47_RS24850 (5013701) | 5013701..5014383 | + | 683 | Protein_4844 | DUF3596 domain-containing protein | - |
| NUE47_RS24855 (5014363) | 5014363..5014449 | - | 87 | Protein_4845 | hypothetical protein | - |
| NUE47_RS24860 (5014655) | 5014655..5014981 | - | 327 | WP_001302046.1 | YnfA family protein | - |
| NUE47_RS24865 (5015116) | 5015116..5015457 | + | 342 | WP_000705189.1 | DUF1283 family protein | - |
| NUE47_RS24870 (5015492) | 5015492..5016052 | + | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| NUE47_RS24875 (5016055) | 5016055..5016765 | - | 711 | WP_001303515.1 | YnfC family lipoprotein | - |
| NUE47_RS24880 (5016873) | 5016873..5017178 | + | 306 | WP_000778147.1 | DUF1161 domain-containing protein | - |
| NUE47_RS24885 (5017377) | 5017377..5019803 | + | 2427 | WP_000041704.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| NUE47_RS24890 (5019864) | 5019864..5022287 | + | 2424 | WP_001414236.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| NUE47_RS24895 (5022298) | 5022298..5022915 | + | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| NUE47_RS24900 (5022917) | 5022917..5023771 | + | 855 | WP_000526515.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| NUE47_RS24905 (5023814) | 5023814..5024428 | + | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| NUE47_RS24910 (5024586) | 5024586..5025878 | + | 1293 | WP_071525082.1 | voltage-gated ClC-type chloride channel ClcB | - |
| NUE47_RS24915 (5025831) | 5025831..5026526 | - | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| NUE47_RS24920 (5026651) | 5026651..5027871 | - | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli O157:H7 str. EDL933 | Prophage | TA20321 | NC_002655 | 2282958..2329636 | 0.01 |