MGE detailed information
MGE type: Mobilizable plasmid MGE length: 180424 bp
Accession: NZ_CP103403 Location: 1..180424 Organism: Pantoea agglomerans strain CHTF15 Replicon: plasmid unnamed2
Accession: NZ_CP103403 Location: 1..180424 Organism: Pantoea agglomerans strain CHTF15 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NYF24_RS21210 (NYF24_21210) | 1..1074 | + | 1074 | WP_010256943.1 | RepB family plasmid replication initiator protein | - |
| NYF24_RS21215 (NYF24_21215) | 2437..3624 | - | 1188 | WP_258996216.1 | diguanylate phosphodiesterase | - |
| NYF24_RS21220 (NYF24_21220) | 3876..4085 | - | 210 | WP_033759908.1 | DUF1471 domain-containing protein | - |
| NYF24_RS21225 (NYF24_21225) | 4285..6069 | - | 1785 | WP_010256951.1 | GGDEF and EAL domain-containing protein | - |
| NYF24_RS21230 (NYF24_21230) | 6590..6814 | - | 225 | WP_033770153.1 | DUF3606 domain-containing protein | - |
| NYF24_RS21235 (NYF24_21235) | 7183..7422 | + | 240 | WP_022624236.1 | hypothetical protein | - |
| NYF24_RS21240 (NYF24_21240) | 7598..8086 | + | 489 | WP_010256958.1 | Hsp20 family protein | - |
| NYF24_RS21245 (NYF24_21245) | 8160..8924 | - | 765 | WP_258996217.1 | MerR family transcriptional regulator | - |
| NYF24_RS21250 (NYF24_21250) | 9120..9329 | - | 210 | WP_129063446.1 | CsbD family protein | - |
| NYF24_RS21255 (NYF24_21255) | 9501..10718 | - | 1218 | WP_010256973.1 | diguanylate phosphodiesterase | - |
| NYF24_RS21260 (NYF24_21260) | 11677..11910 | + | 234 | WP_033781058.1 | hypothetical protein | - |
| NYF24_RS21265 (NYF24_21265) | 11986..12315 | - | 330 | WP_010256979.1 | hypothetical protein | - |
| NYF24_RS21270 (NYF24_21270) | 12958..14616 | + | 1659 | WP_258996218.1 | hypothetical protein | VF |
| NYF24_RS21275 (NYF24_21275) | 15219..17144 | + | 1926 | WP_010256986.1 | hypothetical protein | VF |
| NYF24_RS21280 (NYF24_21280) | 17200..18000 | - | 801 | WP_111534858.1 | MBL fold metallo-hydrolase | - |
| NYF24_RS21285 (NYF24_21285) | 18078..19193 | - | 1116 | WP_258996219.1 | metallophosphoesterase | - |
| NYF24_RS21290 (NYF24_21290) | 19431..21758 | - | 2328 | WP_033770142.1 | FdhF/YdeP family oxidoreductase | - |
| NYF24_RS21295 (NYF24_21295) | 22026..22556 | + | 531 | WP_258996220.1 | cyclophilin-like fold protein | - |
| NYF24_RS21300 (NYF24_21300) | 22730..23077 | - | 348 | WP_003850685.1 | HNH nuclease YajD | - |
| NYF24_RS21305 (NYF24_21305) | 23198..23479 | - | 282 | WP_201030365.1 | helix-turn-helix transcriptional regulator | - |
| NYF24_RS21310 (NYF24_21310) | 23734..26838 | + | 3105 | WP_045139847.1 | Multidrug resistance protein MexB | VF |
| NYF24_RS21315 (NYF24_21315) | 26898..27923 | - | 1026 | WP_010671942.1 | alpha/beta hydrolase | - |
| NYF24_RS21320 (NYF24_21320) | 27992..29116 | - | 1125 | WP_249655152.1 | MFS transporter | - |
| NYF24_RS21325 (NYF24_21325) | 29319..30215 | + | 897 | WP_010257019.1 | HTH-type transcriptional regulator PgrR | VF |
| NYF24_RS21330 (NYF24_21330) | 30279..30455 | - | 177 | WP_010257023.1 | KGG domain-containing protein | - |
| NYF24_RS21335 (NYF24_21335) | 30657..30953 | + | 297 | WP_258996221.1 | hypothetical protein | - |
| NYF24_RS21340 (NYF24_21340) | 30998..31285 | - | 288 | WP_258996222.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| NYF24_RS21345 (NYF24_21345) | 31285..31524 | - | 240 | WP_258996223.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| NYF24_RS21350 (NYF24_21350) | 31884..33857 | + | 1974 | WP_061902448.1 | hypothetical protein | VF |
| NYF24_RS21355 (NYF24_21355) | 33962..34978 | + | 1017 | WP_010257039.1 | NAD(P)-dependent alcohol dehydrogenase | - |
| NYF24_RS21360 (NYF24_21360) | 35028..35696 | - | 669 | WP_033759936.1 | DUF2268 domain-containing putative Zn-dependent protease | - |
| NYF24_RS21365 (NYF24_21365) | 36047..36826 | + | 780 | WP_010671936.1 | MBL fold metallo-hydrolase | - |
| NYF24_RS21370 (NYF24_21370) | 36902..37894 | + | 993 | WP_122459955.1 | HTH-type transcriptional regulator CdhR | VF |
| NYF24_RS21375 (NYF24_21375) | 37986..38387 | - | 402 | WP_258996224.1 | H-NS family nucleoid-associated regulatory protein | - |
| NYF24_RS21380 (NYF24_21380) | 38663..40225 | + | 1563 | WP_258996225.1 | hypothetical protein | VF |
| NYF24_RS21385 (NYF24_21385) | 40294..40731 | + | 438 | WP_022624259.1 | VOC family protein | - |
| NYF24_RS21390 (NYF24_21390) | 40969..41370 | - | 402 | WP_010257055.1 | H-NS family nucleoid-associated regulatory protein | - |
| NYF24_RS21395 (NYF24_21395) | 42243..42428 | + | 186 | WP_010671932.1 | DUF2256 domain-containing protein | - |
| NYF24_RS21400 (NYF24_21400) | 42481..42783 | - | 303 | WP_159227256.1 | hypothetical protein | - |
| NYF24_RS21405 (NYF24_21405) | 42889..43431 | - | 543 | WP_033770122.1 | YfaZ family outer membrane protein | - |
| NYF24_RS21410 (NYF24_21410) | 43495..43731 | - | 237 | WP_010257065.1 | YgdI/YgdR family lipoprotein | - |
| NYF24_RS21415 (NYF24_21415) | 44703..45083 | + | 381 | WP_010671929.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| NYF24_RS21420 (NYF24_21420) | 45579..45803 | + | 225 | WP_022624265.1 | FeoA domain-containing protein | - |
| NYF24_RS21425 (NYF24_21425) | 45803..48130 | + | 2328 | WP_258996226.1 | Fe(2+) transporter FeoB | VF |
| NYF24_RS21430 (NYF24_21430) | 48566..49603 | - | 1038 | WP_258996227.1 | tyrosine-type recombinase/integrase | - |
| NYF24_RS21435 (NYF24_21435) | 50537..51007 | + | 471 | WP_033770116.1 | SgcJ/EcaC family oxidoreductase | - |
| NYF24_RS21440 (NYF24_21440) | 51302..52519 | - | 1218 | WP_258996228.1 | monooxygenase | - |
| NYF24_RS21445 (NYF24_21445) | 52512..53972 | - | 1461 | WP_033759963.1 | MFS transporter | - |
| NYF24_RS21450 (NYF24_21450) | 54331..55740 | - | 1410 | WP_154210779.1 | LLM class flavin-dependent oxidoreductase | - |
| NYF24_RS21455 (NYF24_21455) | 55809..57221 | - | 1413 | WP_258996229.1 | FAD-dependent oxidoreductase | - |
| NYF24_RS21460 (NYF24_21460) | 57241..58413 | - | 1173 | WP_010257094.1 | FMNH2-dependent alkanesulfonate monooxygenase | - |
| NYF24_RS21465 (NYF24_21465) | 58688..60577 | + | 1890 | WP_060678742.1 | Anaerobic nitric oxide reductase transcription regulator NorR | VF |
| NYF24_RS21470 (NYF24_21470) | 60697..61623 | + | 927 | WP_258996236.1 | sulfonate ABC transporter substrate-binding protein | - |
| NYF24_RS21475 (NYF24_21475) | 61939..62208 | - | 270 | WP_010257103.1 | DUF1471 family periplasmic protein YahO | - |
| NYF24_RS21480 (NYF24_21480) | 62484..63620 | - | 1137 | WP_033786324.1 | HlyD family secretion protein | - |
| NYF24_RS21485 (NYF24_21485) | 63622..63948 | - | 327 | WP_010257107.1 | DUF3302 domain-containing protein | - |
| NYF24_RS21490 (NYF24_21490) | 64543..66195 | + | 1653 | WP_228312812.1 | intermembrane transport protein PqiB | - |
| NYF24_RS21495 (NYF24_21495) | 66336..66587 | + | 252 | WP_022624281.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| NYF24_RS21500 (NYF24_21500) | 66584..66871 | + | 288 | WP_172608109.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| NYF24_RS21505 (NYF24_21505) | 67141..67431 | - | 291 | WP_022624282.1 | XRE family transcriptional regulator | - |
| NYF24_RS21510 (NYF24_21510) | 67462..67737 | - | 276 | Protein_60 | SAM-dependent DNA methyltransferase | - |
| NYF24_RS21515 (NYF24_21515) | 67915..68106 | + | 192 | WP_233267992.1 | hypothetical protein | - |
| NYF24_RS21520 (NYF24_21520) | 68211..68576 | - | 366 | WP_022624285.1 | 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF | - |
| NYF24_RS21525 (NYF24_21525) | 68573..68893 | - | 321 | WP_010257131.1 | 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE | - |
| NYF24_RS21530 (NYF24_21530) | 68893..70560 | - | 1668 | WP_258996230.1 | lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase | - |
| NYF24_RS21535 (NYF24_21535) | 70560..71462 | - | 903 | WP_258996231.1 | 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase | - |
| NYF24_RS21540 (NYF24_21540) | 71462..73441 | - | 1980 | WP_258996232.1 | Bifunctional polymyxin resistance protein ArnA | VF |
| NYF24_RS21545 (NYF24_21545) | 73438..74421 | - | 984 | WP_033759991.1 | Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase | VF |
| NYF24_RS21550 (NYF24_21550) | 74423..75559 | - | 1137 | WP_060678748.1 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | VF |
| NYF24_RS21555 (NYF24_21555) | 76256..76834 | + | 579 | WP_033774155.1 | YceI family protein | - |
| NYF24_RS21560 (NYF24_21560) | 76857..77642 | - | 786 | WP_258996233.1 | hypothetical protein | - |
| NYF24_RS21565 (NYF24_21565) | 77639..78139 | - | 501 | WP_080669865.1 | RNA polymerase sigma factor | - |
| NYF24_RS21570 (NYF24_21570) | 78176..78712 | - | 537 | WP_010257155.1 | tetratricopeptide repeat protein | - |
| NYF24_RS21575 (NYF24_21575) | 78856..79869 | - | 1014 | WP_033786442.1 | Gfo/Idh/MocA family oxidoreductase | - |
| NYF24_RS21580 (NYF24_21580) | 79978..80988 | + | 1011 | WP_258996237.1 | LacI family DNA-binding transcriptional regulator | - |
| NYF24_RS21585 (NYF24_21585) | 81591..82034 | + | 444 | WP_022624297.1 | PACE efflux transporter | - |
| NYF24_RS21590 (NYF24_21590) | 82269..82472 | + | 204 | WP_010257166.1 | Hha/YmoA family nucleoid-associated regulatory protein | - |
| NYF24_RS21595 (NYF24_21595) | 83010..83222 | - | 213 | WP_244213019.1 | DUF333 domain-containing protein | - |
| NYF24_RS21600 (NYF24_21600) | 83881..86778 | + | 2898 | WP_061902470.1 | hypothetical protein | VF |
| NYF24_RS21605 (NYF24_21605) | 86819..87136 | + | 318 | WP_258996234.1 | NirD/YgiW/YdeI family stress tolerance protein | - |
| NYF24_RS21610 (NYF24_21610) | 87199..88443 | - | 1245 | WP_258996235.1 | HlyD family type I secretion periplasmic adaptor subunit | - |
| NYF24_RS21615 (NYF24_21615) | 88440..90662 | - | 2223 | WP_258996238.1 | type I secretion system permease/ATPase | - |
| NYF24_RS21620 (NYF24_21620) | 90805..92019 | - | 1215 | WP_258996192.1 | TolC family protein | - |
| NYF24_RS21625 (NYF24_21625) | 92414..103570 | - | 11157 | WP_258996193.1 | Ig-like domain-containing protein | - |
| NYF24_RS21630 (NYF24_21630) | 103934..104653 | - | 720 | WP_258996194.1 | hypothetical protein | - |
| NYF24_RS21635 (NYF24_21635) | 104794..105429 | - | 636 | WP_010256756.1 | LuxR family transcriptional regulator | - |
| NYF24_RS21640 (NYF24_21640) | 105475..106065 | - | 591 | WP_033770258.1 | helix-turn-helix domain-containing protein | - |
| NYF24_RS21645 (NYF24_21645) | 107091..107408 | + | 318 | WP_010256762.1 | hypothetical protein | - |
| NYF24_RS21650 (NYF24_21650) | 107418..107639 | + | 222 | WP_010256766.1 | hypothetical protein | - |
| NYF24_RS21655 (NYF24_21655) | 107734..108261 | + | 528 | WP_060678767.1 | Major fimbrial subunit SMF-1 | VF |
| NYF24_RS21660 (NYF24_21660) | 108324..109061 | + | 738 | WP_245115374.1 | putative fimbrial chaperone YadV | VF |
| NYF24_RS21665 (NYF24_21665) | 109218..111677 | + | 2460 | WP_258996195.1 | Outer membrane usher protein HtrE | VF |
| NYF24_RS21670 (NYF24_21670) | 111690..112745 | + | 1056 | WP_258996196.1 | fimbrial protein | - |
| NYF24_RS21675 (NYF24_21675) | 112805..113467 | + | 663 | WP_187515728.1 | response regulator transcription factor | - |
| NYF24_RS21680 (NYF24_21680) | 113502..114824 | + | 1323 | WP_010256785.1 | TolC family outer membrane protein | - |
| NYF24_RS21685 (NYF24_21685) | 114850..116109 | + | 1260 | WP_258996197.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| NYF24_RS21690 (NYF24_21690) | 116126..118309 | + | 2184 | WP_029519681.1 | peptidase domain-containing ABC transporter | - |
| NYF24_RS21695 (NYF24_21695) | 118302..118736 | + | 435 | WP_258996199.1 | DUF1795 domain-containing protein | - |
| NYF24_RS21700 (NYF24_21700) | 118849..119346 | - | 498 | WP_022624196.1 | FidL-like protein | - |
| NYF24_RS21705 (NYF24_21705) | 119343..120176 | - | 834 | WP_258996200.1 | winged helix-turn-helix domain-containing protein | - |
| NYF24_RS21710 (NYF24_21710) | 120377..121297 | - | 921 | WP_010256805.1 | substrate-binding domain-containing protein | - |
| NYF24_RS21715 (NYF24_21715) | 121366..122145 | - | 780 | WP_258996201.1 | TIM barrel protein | - |
| NYF24_RS21720 (NYF24_21720) | 122145..123158 | - | 1014 | WP_033759856.1 | Gfo/Idh/MocA family oxidoreductase | - |
| NYF24_RS21725 (NYF24_21725) | 123155..124618 | - | 1464 | WP_258996202.1 | sugar porter family MFS transporter | - |
| NYF24_RS21730 (NYF24_21730) | 124808..126766 | + | 1959 | WP_033781126.1 | Acetoin dehydrogenase operon transcriptional activator AcoR | VF |
| NYF24_RS21735 (NYF24_21735) | 126911..127525 | + | 615 | WP_258996203.1 | hypothetical protein | VF |
| NYF24_RS21740 (NYF24_21740) | 127763..129046 | + | 1284 | WP_258996204.1 | beta-ketoacyl-ACP synthase II | - |
| NYF24_RS21745 (NYF24_21745) | 129288..130166 | + | 879 | WP_010256830.1 | ROK family protein | - |
| NYF24_RS21750 (NYF24_21750) | 130281..131231 | - | 951 | WP_029519683.1 | ISNCY family transposase ISRor2 | VF |
| NYF24_RS21755 (NYF24_21755) | 131562..131684 | - | 123 | WP_254920079.1 | hypothetical protein | - |
| NYF24_RS21760 (NYF24_21760) | 131693..132478 | - | 786 | WP_010256837.1 | MipA/OmpV family protein | - |
| NYF24_RS21765 (NYF24_21765) | 132608..133306 | + | 699 | WP_258996206.1 | Transcriptional regulatory protein SrrA | VF |
| NYF24_RS21770 (NYF24_21770) | 133303..134472 | + | 1170 | WP_064689858.1 | ATP-binding protein | - |
| NYF24_RS21775 (NYF24_21775) | 134566..135699 | + | 1134 | WP_258996207.1 | efflux RND transporter periplasmic adaptor subunit | - |
| NYF24_RS21780 (NYF24_21780) | 135696..138740 | + | 3045 | WP_258996208.1 | efflux RND transporter permease subunit | - |
| NYF24_RS21785 (NYF24_21785) | 138791..139036 | - | 246 | WP_010256845.1 | hypothetical protein | - |
| NYF24_RS21790 (NYF24_21790) | 139108..140013 | - | 906 | WP_022624205.1 | LysR family transcriptional regulator | - |
| NYF24_RS21795 (NYF24_21795) | 140118..140900 | + | 783 | WP_033781025.1 | acetolactate decarboxylase | - |
| NYF24_RS21800 (NYF24_21800) | 140915..142594 | + | 1680 | WP_154210809.1 | acetolactate synthase AlsS | - |
| NYF24_RS21805 (NYF24_21805) | 142616..143389 | + | 774 | WP_154210826.1 | Diacetyl reductase [(S)-acetoin forming] | VF |
| NYF24_RS21810 (NYF24_21810) | 143595..145046 | + | 1452 | WP_072044064.1 | Flagellin | VF |
| NYF24_RS21815 (NYF24_21815) | 145387..146700 | + | 1314 | WP_258996209.1 | CitMHS family transporter | - |
| NYF24_RS21820 (NYF24_21820) | 146868..147707 | + | 840 | WP_010256859.1 | MBL fold metallo-hydrolase | - |
| NYF24_RS21825 (NYF24_21825) | 147759..148072 | - | 314 | Protein_123 | HigA family addiction module antitoxin | - |
| NYF24_RS21830 (NYF24_21830) | 148172..150709 | - | 2538 | WP_258996210.1 | UvrABC system protein A | VF |
| NYF24_RS21835 (NYF24_21835) | 151372..151830 | + | 459 | WP_031292265.1 | hypothetical protein | - |
| NYF24_RS21840 (NYF24_21840) | 151824..152117 | + | 294 | WP_022624214.1 | DUF1493 family protein | - |
| NYF24_RS21845 (NYF24_21845) | 152217..153310 | + | 1094 | WP_258996239.1 | IS3 family transposase ISEhe4 | Transposase |
| NYF24_RS21850 (NYF24_21850) | 153524..155002 | - | 1479 | WP_158132441.1 | DUF2382 domain-containing protein | - |
| NYF24_RS21855 (NYF24_21855) | 155289..155858 | - | 570 | WP_258996211.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| NYF24_RS21860 (NYF24_21860) | 156118..156702 | + | 585 | WP_045139833.1 | GNAT family protein | - |
| NYF24_RS21865 (NYF24_21865) | 156758..158893 | - | 2136 | WP_258996212.1 | EAL domain-containing protein | - |
| NYF24_RS21870 (NYF24_21870) | 159299..159538 | - | 240 | WP_010256895.1 | hypothetical protein | - |
| NYF24_RS21875 (NYF24_21875) | 159900..161333 | - | 1434 | WP_258996213.1 | hypothetical protein | VF |
| NYF24_RS21880 (NYF24_21880) | 161680..163461 | + | 1782 | WP_029519494.1 | GGDEF and EAL domain-containing protein | - |
| NYF24_RS21885 (NYF24_21885) | 163486..165069 | - | 1584 | WP_022624223.1 | sensor domain-containing diguanylate cyclase | - |
| NYF24_RS21890 (NYF24_21890) | 165468..165641 | - | 174 | WP_010256913.1 | hypothetical protein | - |
| NYF24_RS21895 (NYF24_21895) | 166160..167071 | + | 912 | WP_064689867.1 | GNAT family N-acetyltransferase | - |
| NYF24_RS21900 (NYF24_21900) | 167073..167318 | - | 246 | WP_010256916.1 | hypothetical protein | - |
| NYF24_RS21905 (NYF24_21905) | 167701..168246 | + | 546 | WP_158132448.1 | chorismate mutase | - |
| NYF24_RS21910 (NYF24_21910) | 168269..169459 | + | 1191 | WP_064689868.1 | cytochrome P450 | - |
| NYF24_RS21915 (NYF24_21915) | 169485..170489 | - | 1005 | WP_010256922.1 | LacI family DNA-binding transcriptional regulator | - |
| NYF24_RS21920 (NYF24_21920) | 170519..171928 | - | 1410 | WP_022624228.1 | sucrose-6-phosphate hydrolase | - |
| NYF24_RS21925 (NYF24_21925) | 171928..173298 | - | 1371 | WP_010256928.1 | sucrose-specific PTS transporter subunit IIBC | - |
| NYF24_RS21930 (NYF24_21930) | 173366..174901 | - | 1536 | WP_258996214.1 | carbohydrate porin | - |
| NYF24_RS21935 (NYF24_21935) | 175059..175985 | - | 927 | WP_258996215.1 | aminoimidazole riboside kinase | - |
| NYF24_RS21940 (NYF24_21940) | 176205..177176 | - | 972 | WP_122889906.1 | ParB family protein | - |
| NYF24_RS21945 (NYF24_21945) | 177173..178375 | - | 1203 | WP_010256940.1 | Plasmid partition protein A | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|