Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-RelB
Location 30998..31524 Replicon plasmid unnamed2
Accession NZ_CP103403
Organism Pantoea agglomerans strain CHTF15

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag NYF24_RS21340 Protein ID WP_258996222.1
Coordinates 30998..31285 (-) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag NYF24_RS21345 Protein ID WP_258996223.1
Coordinates 31285..31524 (-) Length 80 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NYF24_RS21315 (NYF24_21315) 26898..27923 - 1026 WP_010671942.1 alpha/beta hydrolase -
NYF24_RS21320 (NYF24_21320) 27992..29116 - 1125 WP_249655152.1 MFS transporter -
NYF24_RS21325 (NYF24_21325) 29319..30215 + 897 WP_010257019.1 LysR family transcriptional regulator -
NYF24_RS21330 (NYF24_21330) 30279..30455 - 177 WP_010257023.1 KGG domain-containing protein -
NYF24_RS21335 (NYF24_21335) 30657..30953 + 297 WP_258996221.1 hypothetical protein -
NYF24_RS21340 (NYF24_21340) 30998..31285 - 288 WP_258996222.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
NYF24_RS21345 (NYF24_21345) 31285..31524 - 240 WP_258996223.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
NYF24_RS21350 (NYF24_21350) 31884..33857 + 1974 WP_061902448.1 methyl-accepting chemotaxis protein -
NYF24_RS21355 (NYF24_21355) 33962..34978 + 1017 WP_010257039.1 NAD(P)-dependent alcohol dehydrogenase -
NYF24_RS21360 (NYF24_21360) 35028..35696 - 669 WP_033759936.1 DUF2268 domain-containing putative Zn-dependent protease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Mobilizable plasmid - - 1..180424 180424


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-83)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(2-79)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11028.89 Da        Isoelectric Point: 10.3173

>T255005 WP_258996222.1 NZ_CP103403:c31285-30998 [Pantoea agglomerans]
MAWQLEFDQRALKEWRKLGPTVREQLKKKLAECLESPRIEANKLSGIPDCYKIKLKSSGYRLVYQVIDDRVVVFVVAVGK
RERSEVYSAASRRLS

Download         Length: 288 bp

Antitoxin


Download         Length: 80 a.a.        Molecular weight: 8974.27 Da        Isoelectric Point: 4.2220

>AT255005 WP_258996223.1 NZ_CP103403:c31524-31285 [Pantoea agglomerans]
MGTINIRIDDDLKTRSYAALEKMGVTPSDALRLMLEYIADNERLPFKQTLLSDEDAALVDIVKERLQNPEPVRVTLDDL

Download         Length: 240 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References