Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-YafN |
| Location | 66336..66871 | Replicon | plasmid unnamed2 |
| Accession | NZ_CP103403 | ||
| Organism | Pantoea agglomerans strain CHTF15 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | NYF24_RS21500 | Protein ID | WP_172608109.1 |
| Coordinates | 66584..66871 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | A0A379LU84 |
| Locus tag | NYF24_RS21495 | Protein ID | WP_022624281.1 |
| Coordinates | 66336..66587 (+) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NYF24_RS21475 (NYF24_21475) | 61939..62208 | - | 270 | WP_010257103.1 | DUF1471 family periplasmic protein YahO | - |
| NYF24_RS21480 (NYF24_21480) | 62484..63620 | - | 1137 | WP_033786324.1 | HlyD family secretion protein | - |
| NYF24_RS21485 (NYF24_21485) | 63622..63948 | - | 327 | WP_010257107.1 | DUF3302 domain-containing protein | - |
| NYF24_RS21490 (NYF24_21490) | 64543..66195 | + | 1653 | WP_228312812.1 | intermembrane transport protein PqiB | - |
| NYF24_RS21495 (NYF24_21495) | 66336..66587 | + | 252 | WP_022624281.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| NYF24_RS21500 (NYF24_21500) | 66584..66871 | + | 288 | WP_172608109.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| NYF24_RS21505 (NYF24_21505) | 67141..67431 | - | 291 | WP_022624282.1 | XRE family transcriptional regulator | - |
| NYF24_RS21510 (NYF24_21510) | 67462..67737 | - | 276 | Protein_60 | SAM-dependent DNA methyltransferase | - |
| NYF24_RS21515 (NYF24_21515) | 67915..68106 | + | 192 | WP_233267992.1 | hypothetical protein | - |
| NYF24_RS21520 (NYF24_21520) | 68211..68576 | - | 366 | WP_022624285.1 | 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF | - |
| NYF24_RS21525 (NYF24_21525) | 68573..68893 | - | 321 | WP_010257131.1 | 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE | - |
| NYF24_RS21530 (NYF24_21530) | 68893..70560 | - | 1668 | WP_258996230.1 | lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase | - |
| NYF24_RS21535 (NYF24_21535) | 70560..71462 | - | 903 | WP_258996231.1 | 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Mobilizable plasmid | - | - | 1..180424 | 180424 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|