MGE detailed information
MGE type: Genomic_island MGE length: 8883 bp
Accession: NZ_CP102379 Location: 4228837..4237719 Organism: Escherichia coli strain BM28 lysU Replicon: chromosome
Accession: NZ_CP102379 Location: 4228837..4237719 Organism: Escherichia coli strain BM28 lysU Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NR350_RS20425 (4225568) | 4225568..4226287 | - | 720 | WP_000611288.1 | two-component system response regulator DcuR | - |
| NR350_RS20430 (4226284) | 4226284..4227915 | - | 1632 | WP_001216477.1 | sensor histidine kinase | - |
| NR350_RS20435 (4228096) | 4228096..4228326 | + | 231 | WP_000371704.1 | 4Fe-4S mono-cluster protein YjdI | - |
| NR350_RS20440 (4228338) | 4228338..4228610 | + | 273 | WP_000405651.1 | GNAT family N-acetyltransferase | - |
| NR350_RS20445 (4228837) | 4228837..4229133 | + | 297 | WP_000398619.1 | type V toxin-antitoxin system endoribonuclease antitoxin GhoS | Antitoxin Detail |
| NR350_RS20450 (4229161) | 4229161..4229334 | + | 174 | WP_001173343.1 | type V toxin-antitoxin system toxin GhoT | Toxin Detail |
| NR350_RS20455 (4229741) | 4229741..4230400 | + | 660 | WP_006286297.1 | Chloramphenicol acetyltransferase | ARG |
| NR350_RS20460 (4230739) | 4230739..4232196 | - | 1458 | WP_000856829.1 | dipeptide/tripeptide permease DtpC | - |
| NR350_RS20465 (4232255) | 4232255..4234402 | - | 2148 | WP_001295383.1 | lysine decarboxylase CadA | - |
| NR350_RS20470 (4234482) | 4234482..4235816 | - | 1335 | WP_000092909.1 | cadaverine/lysine antiporter | - |
| NR350_RS20475 (4236181) | 4236181..4237719 | - | 1539 | WP_001187173.1 | lysine decarboxylation/transport transcriptional activator CadC | - |
| NR350_RS20485 (4238518) | 4238518..4239093 | - | 576 | WP_001188520.1 | transcriptional regulator | - |
| NR350_RS20490 (4239130) | 4239130..4240827 | - | 1698 | WP_000068922.1 | protein-disulfide reductase DsbD | - |
| NR350_RS20495 (4240803) | 4240803..4241141 | - | 339 | WP_000883400.1 | divalent cation tolerance protein CutA | - |
| NR350_RS20500 (4241257) | 4241257..4242558 | - | 1302 | WP_000961959.1 | anaerobic C4-dicarboxylate transporter DcuA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20087 | HG738867 | 4238430..4247780 | 0.007 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21458 | NC_007779 | 4357262..4366612 | 0.007 | |
| Escherichia coli BW2952 | Genomic island | TA23874 | NC_012759 | 4289342..4298692 | 0.007 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285032 | NZ_HG738867 | 4238430..4247780 | 0.007 |