MGE detailed information
MGE type: Prophage MGE length: 21675 bp
Accession: NZ_CP102379 Location: 1284440..1306114 Organism: Escherichia coli strain BM28 lysU Replicon: chromosome
Accession: NZ_CP102379 Location: 1284440..1306114 Organism: Escherichia coli strain BM28 lysU Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NR350_RS06240 (1280429) | 1280429..1280476 | + | 48 | WP_211180494.1 | protein YnaN | - |
| NR350_RS06245 (1280490) | 1280490..1281473 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| NR350_RS06250 (1281951) | 1281951..1283324 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| NR350_RS06255 (1283453) | 1283453..1284388 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| NR350_RS06260 (1284440) | 1284440..1285675 | - | 1236 | WP_000040852.1 | Putative defective protein IntQ ; Integrase | Integrase |
| NR350_RS06265 (1285677) | 1285677..1285892 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| - (1285996) | 1285996..1286174 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1285996) | 1285996..1286174 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1285996) | 1285996..1286174 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1285996) | 1285996..1286174 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| NR350_RS06270 (1285971) | 1285971..1286180 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| NR350_RS06275 (1286173) | 1286173..1286367 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| NR350_RS06280 (1286424) | 1286424..1287233 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| NR350_RS06285 (1287226) | 1287226..1289826 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| NR350_RS06290 (1289928) | 1289928..1290203 | - | 276 | WP_000632297.1 | protein RacC | - |
| NR350_RS06295 (1290278) | 1290278..1290448 | - | 171 | WP_001352098.1 | YdaE family protein | - |
| NR350_RS06300 (1290448) | 1290448..1290669 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| NR350_RS06305 (1291111) | 1291111..1291599 | + | 489 | WP_001312793.1 | superinfection exclusion B family protein | - |
| NR350_RS06310 (1291596) | 1291596..1291751 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| NR350_RS06315 (1291762) | 1291762..1291896 | - | 135 | WP_000233809.1 | phage protein | - |
| NR350_RS06320 (1292205) | 1292205..1292681 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| NR350_RS06325 (1292805) | 1292805..1293101 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| NR350_RS06330 (1293124) | 1293124..1293546 | + | 423 | WP_000693797.1 | toxin YdaT family protein | - |
| NR350_RS06335 (1293559) | 1293559..1294416 | + | 858 | WP_000899748.1 | YdaU family protein | - |
| NR350_RS06340 (1294423) | 1294423..1295169 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| NR350_RS06345 (1295192) | 1295192..1295644 | + | 453 | Protein_1233 | DUF1627 domain-containing protein | - |
| NR350_RS06350 (1295840) | 1295840..1296025 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| NR350_RS06355 (1296222) | 1296222..1297679 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| NR350_RS06360 (1297817) | 1297817..1298080 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| NR350_RS06365 (1298061) | 1298061..1298420 | + | 360 | WP_000091628.1 | protein YdaY | - |
| NR350_RS06370 (1298528) | 1298528..1298728 | + | 201 | WP_001755909.1 | hypothetical protein | - |
| NR350_RS06375 (1298894) | 1298894..1299826 | + | 933 | Protein_1239 | phage tail length tape measure family protein | - |
| NR350_RS06380 (1299829) | 1299829..1300044 | + | 216 | Protein_1240 | Ail/Lom family outer membrane beta-barrel protein | - |
| NR350_RS06385 (1300186) | 1300186..1301166 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| NR350_RS06390 (1301236) | 1301236..1301424 | + | 189 | Protein_1242 | Ail/Lom family outer membrane beta-barrel protein | - |
| NR350_RS06395 (1301489) | 1301489..1304851 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| NR350_RS06400 (1304851) | 1304851..1305426 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| NR350_RS06405 (1305524) | 1305524..1306114 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| NR350_RS06410 (1306431) | 1306431..1306664 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| NR350_RS06415 (1306733) | 1306733..1306846 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| NR350_RS06420 (1307186) | 1307186..1307359 | + | 174 | WP_001157926.1 | hypothetical protein | - |
| NR350_RS06425 (1307625) | 1307625..1308059 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| NR350_RS06430 (1308200) | 1308200..1309333 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20020 | CP009789 | 1385172..1414104 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Prophage | TA20061 | HG738867 | 1300529..1322203 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Prophage | TA6362 | NC_000913 | 1412000..1433674 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21432 | NC_007779 | 1413714..1435388 | 0 | |
| Escherichia coli str. K-12 substr. DH10B | Prophage | TA22680 | NC_010473 | 1499420..1521094 | 0 | |
| Escherichia coli BW2952 | Prophage | TA23848 | NC_012759 | 1302083..1323757 | 0 | |
| Escherichia coli DH1 | Prophage | TA27398 | NC_017638 | 1394182..1415856 | 0 | |
| Escherichia coli BW25113 | Prophage | TA48677 | NZ_CP009273 | 1406257..1427931 | 0 | |
| Escherichia coli strain DH5alpha | Prophage | TA90473 | NZ_CP025520 | 269442..291116 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Prophage | TA285012 | NZ_HG738867 | 1300529..1322203 | 0 |