MGE detailed information
MGE type: Genomic_island MGE length: 10427 bp
Accession: NZ_CP101388 Location: 1028488..1038914 Organism: Salmonella enterica strain SC2017167 Replicon: chromosome
Accession: NZ_CP101388 Location: 1028488..1038914 Organism: Salmonella enterica strain SC2017167 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NMU38_RS04930 (1023601) | 1023601..1023981 | + | 381 | WP_001070479.1 | DUF4440 domain-containing protein | - |
| NMU38_RS04935 (1024037) | 1024037..1026604 | - | 2568 | WP_001005807.1 | DNA mismatch repair protein MutS | - |
| NMU38_RS04940 (1026763) | 1026763..1027284 | + | 522 | WP_000858988.1 | hypothetical protein | - |
| NMU38_RS04945 (1027456) | 1027456..1028112 | - | 657 | WP_000420452.1 | protein-serine/threonine phosphatase | - |
| NMU38_RS04950 (1028459) | 1028459..1028664 | + | 206 | Protein_971 | IS5 family transposase ISEcl3 | Transposase |
| NMU38_RS04955 (1028737) | 1028737..1029264 | - | 528 | WP_000971655.1 | GNAT family N-acetyltransferase | Toxin Detail |
| NMU38_RS04960 (1029261) | 1029261..1029551 | - | 291 | WP_000855692.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| NMU38_RS04965 (1029821) | 1029821..1029999 | - | 179 | Protein_974 | IS3 family transposase | - |
| NMU38_RS04970 (1030240) | 1030240..1030566 | + | 327 | WP_000393302.1 | hypothetical protein | - |
| NMU38_RS04975 (1030839) | 1030839..1031186 | - | 348 | WP_001669174.1 | DUF1493 family protein | - |
| NMU38_RS04980 (1031171) | 1031171..1031620 | - | 450 | WP_000381610.1 | membrane protein | - |
| NMU38_RS04985 (1032051) | 1032051..1032494 | - | 444 | WP_000715092.1 | Type 3 secretion system pilotin | VF |
| NMU38_RS04990 (1032951) | 1032951..1033601 | + | 651 | WP_001674874.1 | Invasion protein InvF | VF |
| NMU38_RS04995 (1033598) | 1033598..1035286 | + | 1689 | WP_000848113.1 | Type 3 secretion system secretin | VF |
| NMU38_RS05000 (1035283) | 1035283..1036401 | + | 1119 | WP_000612171.1 | Protein MxiC | VF |
| NMU38_RS05005 (1036426) | 1036426..1038483 | + | 2058 | WP_000927219.1 | Invasion protein InvA | VF |
| NMU38_RS05010 (1038507) | 1038507..1038914 | + | 408 | WP_001164066.1 | Surface presentation of antigens protein SpaK | VF |
| NMU38_RS05015 (1038911) | 1038911..1040206 | + | 1296 | WP_000856766.1 | SctN family type III secretion system ATPase InvC | - |
| NMU38_RS05020 (1040184) | 1040184..1040627 | + | 444 | WP_001520714.1 | SPI-1 type III secretion system protein SpaM | - |
| NMU38_RS05025 (1040627) | 1040627..1041637 | + | 1011 | WP_000503098.1 | SPI-1 type III secretion system protein SpaN | - |
| NMU38_RS05030 (1041637) | 1041637..1042548 | + | 912 | WP_000058734.1 | SPI-1 type III secretion system protein SpaO | - |
| NMU38_RS05035 (1042538) | 1042538..1043212 | + | 675 | WP_000526016.1 | SPI-1 type III secretion system export apparatus protein SpaP | - |
| NMU38_RS05040 (1043238) | 1043238..1043498 | + | 261 | WP_000342503.1 | SPI-1 type III secretion system export apparatus protein SpaQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA10052 | UFRD01000002 | 4599654..4610080 | 0 |