MGE detailed information
MGE type: Genomic_island MGE length: 10427 bp
Accession: NZ_CP100707 Location: 1027819..1038245 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain R18.0409 Replicon: chromosome
Accession: NZ_CP100707 Location: 1027819..1038245 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain R18.0409 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL735_RS04925 (1022932) | 1022932..1023312 | + | 381 | WP_001070479.1 | DUF4440 domain-containing protein | - |
| NL735_RS04930 (1023368) | 1023368..1025935 | - | 2568 | WP_001005807.1 | DNA mismatch repair protein MutS | - |
| NL735_RS04935 (1026094) | 1026094..1026615 | + | 522 | WP_000858988.1 | hypothetical protein | - |
| NL735_RS04940 (1026787) | 1026787..1027443 | - | 657 | WP_000420452.1 | protein-serine/threonine phosphatase | - |
| NL735_RS04945 (1027790) | 1027790..1027995 | + | 206 | Protein_970 | IS5 family transposase ISEcl3 | Transposase |
| NL735_RS04950 (1028068) | 1028068..1028595 | - | 528 | WP_000971655.1 | GNAT family N-acetyltransferase | Toxin Detail |
| NL735_RS04955 (1028592) | 1028592..1028882 | - | 291 | WP_000855692.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| NL735_RS04960 (1029152) | 1029152..1029330 | - | 179 | Protein_973 | IS3 family transposase | - |
| NL735_RS04965 (1029571) | 1029571..1029897 | + | 327 | WP_000393302.1 | hypothetical protein | - |
| NL735_RS04970 (1030170) | 1030170..1030517 | - | 348 | WP_001669174.1 | DUF1493 family protein | - |
| NL735_RS04975 (1030502) | 1030502..1030951 | - | 450 | WP_000381610.1 | membrane protein | - |
| NL735_RS04980 (1031382) | 1031382..1031825 | - | 444 | WP_000715092.1 | Type 3 secretion system pilotin | VF |
| NL735_RS04985 (1032282) | 1032282..1032932 | + | 651 | WP_001674874.1 | Invasion protein InvF | VF |
| NL735_RS04990 (1032929) | 1032929..1034617 | + | 1689 | WP_000848113.1 | Type 3 secretion system secretin | VF |
| NL735_RS04995 (1034614) | 1034614..1035732 | + | 1119 | WP_000612171.1 | Protein MxiC | VF |
| NL735_RS05000 (1035757) | 1035757..1037814 | + | 2058 | WP_000927219.1 | Invasion protein InvA | VF |
| NL735_RS05005 (1037838) | 1037838..1038245 | + | 408 | WP_001164066.1 | Surface presentation of antigens protein SpaK | VF |
| NL735_RS05010 (1038242) | 1038242..1039537 | + | 1296 | WP_000856766.1 | SctN family type III secretion system ATPase InvC | - |
| NL735_RS05015 (1039515) | 1039515..1039958 | + | 444 | WP_001520714.1 | SPI-1 type III secretion system protein SpaM | - |
| NL735_RS05020 (1039958) | 1039958..1040968 | + | 1011 | WP_000503098.1 | SPI-1 type III secretion system protein SpaN | - |
| NL735_RS05025 (1040968) | 1040968..1041879 | + | 912 | WP_000058734.1 | SPI-1 type III secretion system protein SpaO | - |
| NL735_RS05030 (1041869) | 1041869..1042543 | + | 675 | WP_000526016.1 | SPI-1 type III secretion system export apparatus protein SpaP | - |
| NL735_RS05035 (1042569) | 1042569..1042829 | + | 261 | WP_000342503.1 | SPI-1 type III secretion system export apparatus protein SpaQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA10052 | UFRD01000002 | 4599654..4610080 | 0 |