MGE detailed information
MGE type: Conjugative plasmid MGE length: 93173 bp
Accession: NZ_CP100704 Location: 1..93173 Organism: Salmonella enterica subsp. enterica serovar Thompson strain R18.0872 Replicon: plasmid pR18.0872_93k
Accession: NZ_CP100704 Location: 1..93173 Organism: Salmonella enterica subsp. enterica serovar Thompson strain R18.0872 Replicon: plasmid pR18.0872_93k
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NL734_RS24150 (1) | 1..1032 | + | 1032 | WP_022630251.1 | plasmid replication initiator RepA | - |
| NL734_RS24155 (1949) | 1949..2218 | + | 270 | WP_000079942.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| NL734_RS24160 (2218) | 2218..2496 | + | 279 | WP_001384452.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| NL734_RS24165 (2542) | 2542..2754 | + | 213 | Protein_3 | 3'-5' exonuclease | - |
| NL734_RS24170 (3013) | 3013..3942 | - | 930 | WP_000102288.1 | hypothetical protein | - |
| NL734_RS24175 (4379) | 4379..5566 | - | 1188 | WP_001697863.1 | IS91 family transposase ISEc37 | Transposase |
| NL734_RS24180 (5566) | 5566..5931 | - | 366 | WP_000124134.1 | hypothetical protein | - |
| NL734_RS24185 (6079) | 6079..7371 | - | 1293 | Protein_7 | ISL3 family transposase ISEc38 | Transposase |
| NL734_RS24190 (7381) | 7381..7857 | - | 477 | Protein_8 | IS256 family transposase IS1414 | Transposase |
| NL734_RS24195 (7914) | 7914..10595 | - | 2682 | WP_167654536.1 | DNA repair protein | - |
| NL734_RS24200 (11130) | 11130..11444 | + | 315 | WP_058905653.1 | hypothetical protein | - |
| NL734_RS24205 (11506) | 11506..12276 | + | 771 | WP_001499400.1 | hypothetical protein | - |
| NL734_RS24210 (12321) | 12321..13106 | + | 786 | WP_077249540.1 | site-specific integrase | - |
| NL734_RS24215 (13244) | 13244..13519 | - | 276 | WP_000239529.1 | hypothetical protein | - |
| NL734_RS24220 (13513) | 13513..14157 | - | 645 | WP_000633913.1 | division plane positioning ATPase MipZ | - |
| NL734_RS24225 (14386) | 14386..15357 | + | 972 | WP_001103690.1 | plasmid segregation protein ParM | - |
| NL734_RS24230 (15362) | 15362..15754 | + | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
| NL734_RS24235 (15759) | 15759..17030 | - | 1272 | WP_000457496.1 | Y-family DNA polymerase | - |
| NL734_RS24240 (17030) | 17030..17467 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| NL734_RS24245 (17464) | 17464..17712 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| NL734_RS24250 (18130) | 18130..19032 | + | 903 | WP_001298864.1 | DUF1281 domain-containing protein | - |
| NL734_RS24255 (19029) | 19029..19340 | + | 312 | WP_032141194.1 | hypothetical protein | - |
| NL734_RS24260 (19416) | 19416..20099 | + | 684 | WP_000085874.1 | DNA methylase | - |
| NL734_RS24265 (20100) | 20100..20321 | + | 222 | WP_001104885.1 | hypothetical protein | - |
| NL734_RS24270 (20302) | 20302..20768 | + | 467 | Protein_24 | DUF1380 domain-containing protein | - |
| NL734_RS24275 (20819) | 20819..21589 | + | 771 | WP_058799122.1 | hypothetical protein | - |
| NL734_RS24280 (22006) | 22006..22431 | + | 426 | WP_001198941.1 | antirestriction protein | - |
| NL734_RS24285 (22478) | 22478..22900 | + | 423 | WP_000271679.1 | DUF1380 family protein | - |
| NL734_RS24290 (22897) | 22897..23088 | + | 192 | WP_001027500.1 | hypothetical protein | - |
| NL734_RS24295 (23159) | 23159..23473 | + | 315 | WP_024184663.1 | hypothetical protein | - |
| NL734_RS24300 (23857) | 23857..24384 | + | 528 | WP_167654544.1 | single-stranded DNA-binding protein | - |
| NL734_RS24305 (24442) | 24442..24675 | + | 234 | WP_000005985.1 | DUF905 family protein | - |
| NL734_RS24310 (24734) | 24734..26692 | + | 1959 | WP_254521172.1 | ParB/RepB/Spo0J family partition protein | - |
| NL734_RS24315 (26747) | 26747..27181 | + | 435 | WP_000845900.1 | conjugation system SOS inhibitor PsiB | - |
| NL734_RS24320 (27178) | 27178..27897 | + | 720 | WP_001276261.1 | plasmid SOS inhibition protein A | - |
| NL734_RS24325 (27894) | 27894..28490 | + | 597 | WP_000978012.1 | hypothetical protein | - |
| NL734_RS24330 (28953) | 28953..29453 | + | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| NL734_RS24335 (30182) | 30182..30616 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| NL734_RS24340 (30710) | 30710..30976 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| NL734_RS24345 (31041) | 31041..31979 | + | 939 | WP_000038403.1 | Recombination-promoting nuclease RpnA | VF |
| NL734_RS24350 (32002) | 32002..32199 | + | 198 | WP_001348086.1 | hypothetical protein | - |
| NL734_RS24355 (32230) | 32230..32481 | - | 252 | WP_000148285.1 | helix-turn-helix transcriptional regulator | - |
| NL734_RS24360 (33061) | 33061..33909 | + | 849 | WP_001077024.1 | DUF4942 domain-containing protein | - |
| NL734_RS24365 (33995) | 33995..34330 | - | 336 | WP_167654532.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| NL734_RS24370 (34564) | 34564..34896 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| NL734_RS24375 (34907) | 34907..37606 | + | 2700 | WP_011264053.1 | Protein TraI | Relaxase |
| NL734_RS24380 (37644) | 37644..39935 | - | 2292 | WP_011264051.1 | F-type conjugative transfer protein TrbC | - |
| NL734_RS24385 (39928) | 39928..40998 | - | 1071 | WP_011264050.1 | IncI1-type conjugal transfer protein TrbB | - |
| NL734_RS24390 (41017) | 41017..42225 | - | 1209 | WP_011264049.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (42405) | 42405..42462 | - | 58 | NuclAT_1 | - | - |
| - (42405) | 42405..42462 | - | 58 | NuclAT_1 | - | - |
| - (42405) | 42405..42462 | - | 58 | NuclAT_1 | - | - |
| - (42405) | 42405..42462 | - | 58 | NuclAT_1 | - | - |
| NL734_RS24395 (42532) | 42532..43314 | - | 783 | WP_023063753.1 | protein FinQ | - |
| NL734_RS24400 (43510) | 43510..43827 | + | 318 | WP_000118520.1 | quaternary ammonium compound efflux SMR transporter SugE | - |
| NL734_RS24405 (43824) | 43824..44357 | - | 534 | WP_001221666.1 | lipocalin family protein | - |
| NL734_RS24410 (44451) | 44451..45596 | - | 1146 | WP_000976514.1 | Beta-lactamase | ARG |
| NL734_RS24415 (45920) | 45920..47182 | - | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| NL734_RS24420 (47335) | 47335..47709 | - | 375 | WP_223349261.1 | hypothetical protein | - |
| - (47918) | 47918..47978 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (47918) | 47918..47978 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (47918) | 47918..47978 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (47918) | 47918..47978 | - | 61 | NuclAT_0 | - | Antitoxin Detail |
| NL734_RS24425 (48030) | 48030..48182 | + | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| NL734_RS24430 (48254) | 48254..48505 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| NL734_RS24435 (48805) | 48805..49101 | + | 297 | WP_011264046.1 | DinQ-like type I toxin DqlB | - |
| NL734_RS24440 (49166) | 49166..49342 | - | 177 | WP_001054897.1 | hypothetical protein | - |
| NL734_RS24445 (49734) | 49734..49943 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| NL734_RS24450 (50015) | 50015..50677 | - | 663 | WP_000644796.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| NL734_RS24455 (50748) | 50748..52916 | - | 2169 | WP_023518847.1 | DotA/TraY family protein | - |
| NL734_RS24460 (53013) | 53013..53597 | - | 585 | WP_001746157.1 | IncI1-type conjugal transfer protein TraX | - |
| NL734_RS24465 (53626) | 53626..54828 | - | 1203 | WP_001189160.1 | IncI1-type conjugal transfer protein TraW | - |
| NL734_RS24470 (54795) | 54795..55409 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| NL734_RS24475 (55409) | 55409..58453 | - | 3045 | WP_023518848.1 | IncI1-type conjugal transfer protein TraU | - |
| NL734_RS24480 (58543) | 58543..59343 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| NL734_RS24485 (59327) | 59327..59515 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| NL734_RS24490 (59579) | 59579..59983 | - | 405 | WP_000086965.1 | IncI1-type conjugal transfer protein TraR | - |
| NL734_RS24495 (60034) | 60034..60561 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| NL734_RS24500 (60561) | 60561..61265 | - | 705 | WP_001493811.1 | IncI1-type conjugal transfer protein TraP | - |
| NL734_RS24505 (61265) | 61265..62554 | - | 1290 | WP_011264042.1 | conjugal transfer protein TraO | - |
| NL734_RS24510 (62557) | 62557..63540 | - | 984 | WP_001191880.1 | hypothetical protein | VF |
| NL734_RS24515 (63551) | 63551..64243 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| NL734_RS24520 (64240) | 64240..64587 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| NL734_RS24525 (64605) | 64605..68372 | - | 3768 | WP_023518849.1 | DUF5710 domain-containing protein | - |
| NL734_RS24530 (68462) | 68462..69013 | - | 552 | WP_000014584.1 | Phospholipase D | VF |
| NL734_RS24535 (69028) | 69028..69318 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| NL734_RS24540 (69315) | 69315..70463 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| NL734_RS24545 (70460) | 70460..71278 | - | 819 | WP_167654534.1 | hypothetical protein | VF |
| NL734_RS24550 (71275) | 71275..71733 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| NL734_RS24555 (72128) | 72128..72712 | - | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| NL734_RS24560 (72772) | 72772..73974 | - | 1203 | WP_000976351.1 | conjugal transfer protein TraF | - |
| NL734_RS24565 (74060) | 74060..74884 | - | 825 | WP_023518851.1 | conjugal transfer protein TraE | - |
| NL734_RS24570 (75035) | 75035..76189 | - | 1155 | WP_001139955.1 | site-specific integrase | - |
| NL734_RS24575 (76188) | 76188..76472 | + | 285 | WP_187642572.1 | pilus assembly protein PilV | - |
| NL734_RS24580 (77494) | 77494..78930 | - | 1437 | WP_015058206.1 | hypothetical protein | VF |
| NL734_RS24585 (78918) | 78918..79574 | - | 657 | WP_001401940.1 | hypothetical protein | VF |
| NL734_RS24590 (79559) | 79559..80119 | - | 561 | WP_000014005.1 | hypothetical protein | VF |
| NL734_RS24595 (80129) | 80129..80743 | - | 615 | WP_000908227.1 | hypothetical protein | VF |
| NL734_RS24600 (80760) | 80760..81845 | - | 1086 | WP_001208802.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| NL734_RS24605 (81858) | 81858..83411 | - | 1554 | WP_023518854.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| NL734_RS24610 (83422) | 83422..83874 | - | 453 | WP_001247337.1 | hypothetical protein | VF |
| NL734_RS24615 (83861) | 83861..85156 | - | 1296 | WP_023518855.1 | type 4b pilus protein PilO2 | - |
| NL734_RS24620 (85149) | 85149..86831 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| NL734_RS24625 (86845) | 86845..87282 | - | 438 | WP_000539806.1 | hypothetical protein | VF |
| NL734_RS24630 (87282) | 87282..88349 | - | 1068 | WP_001360287.1 | hypothetical protein | VF |
| NL734_RS24635 (89396) | 89396..89650 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| NL734_RS24640 (89822) | 89822..90505 | - | 684 | WP_023518856.1 | conjugal transfer protein TraC | - |
| NL734_RS24645 (90758) | 90758..91291 | - | 534 | WP_001306770.1 | transcription termination/antitermination NusG family protein | - |
| NL734_RS24650 (91733) | 91733..92020 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| NL734_RS24655 (91938) | 91938..92168 | - | 231 | WP_228772074.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|