MGE detailed information
MGE type: Conjugative plasmid MGE length: 87908 bp
Accession: NZ_CP100488 Location: 1..87908 Organism: Escherichia coli strain LH85-a Replicon: plasmid pLH85-a-B
Accession: NZ_CP100488 Location: 1..87908 Organism: Escherichia coli strain LH85-a Replicon: plasmid pLH85-a-B
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NLZ16_RS24950 (46) | 46..1077 | + | 1032 | WP_044706701.1 | plasmid replication initiator RepA | - |
| NLZ16_RS24955 (1986) | 1986..2255 | + | 270 | WP_032181987.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| NLZ16_RS24960 (2255) | 2255..2533 | + | 279 | WP_001384452.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| NLZ16_RS24965 (2573) | 2573..3421 | + | 849 | WP_001057996.1 | 3'-5' exonuclease | - |
| NLZ16_RS24970 (3538) | 3538..4011 | + | 474 | WP_001334658.1 | hypothetical protein | - |
| NLZ16_RS24975 (4488) | 4488..4754 | - | 267 | WP_000627831.1 | hypothetical protein | - |
| NLZ16_RS24980 (4754) | 4754..5248 | - | 495 | WP_001350009.1 | hypothetical protein | - |
| NLZ16_RS24985 (5304) | 5304..5906 | - | 603 | WP_045133169.1 | ProQ/FINO family protein | - |
| NLZ16_RS24990 (6260) | 6260..7606 | + | 1347 | WP_001132021.1 | protein YagA | - |
| NLZ16_RS24995 (7885) | 7885..9765 | + | 1881 | WP_001283356.1 | colicin Ia central receptor-binding domain-containing protein | - |
| NLZ16_RS25000 (9783) | 9783..10130 | - | 348 | WP_000762580.1 | colicin E1 family microcin immunity protein | - |
| NLZ16_RS25005 (10249) | 10249..10596 | + | 348 | WP_000142424.1 | DUF6404 family protein | - |
| NLZ16_RS25010 (10614) | 10614..11204 | - | 591 | WP_000194561.1 | hypothetical protein | - |
| NLZ16_RS25015 (11201) | 11201..11461 | - | 261 | WP_000343102.1 | hypothetical protein | - |
| NLZ16_RS25020 (12030) | 12030..12443 | + | 414 | WP_000465034.1 | hypothetical protein | - |
| NLZ16_RS25025 (12445) | 12445..13230 | + | 786 | WP_001164192.1 | site-specific integrase | - |
| NLZ16_RS25030 (13814) | 13814..14446 | + | 633 | WP_000312331.1 | ParA family protein | - |
| NLZ16_RS25035 (14446) | 14446..14820 | + | 375 | WP_000752652.1 | hypothetical protein | - |
| NLZ16_RS25040 (15070) | 15070..16044 | + | 975 | WP_001217836.1 | plasmid segregation protein ParM | - |
| NLZ16_RS25045 (16048) | 16048..16440 | + | 393 | WP_000272884.1 | plasmid partitioning/stability family protein | - |
| NLZ16_RS25050 (17121) | 17121..18023 | + | 903 | WP_123000501.1 | DUF1281 domain-containing protein | - |
| NLZ16_RS25055 (18020) | 18020..18331 | + | 312 | WP_010891263.1 | hypothetical protein | - |
| NLZ16_RS25060 (18408) | 18408..19091 | + | 684 | WP_000086178.1 | DNA methylase | - |
| NLZ16_RS25065 (19092) | 19092..19313 | + | 222 | WP_001104887.1 | hypothetical protein | - |
| NLZ16_RS25070 (19273) | 19273..19759 | + | 487 | Protein_24 | DUF1380 domain-containing protein | - |
| NLZ16_RS25075 (19810) | 19810..20580 | + | 771 | WP_024133193.1 | hypothetical protein | - |
| NLZ16_RS25080 (20998) | 20998..21423 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| NLZ16_RS25085 (21470) | 21470..21892 | + | 423 | WP_000271725.1 | DUF1380 family protein | - |
| NLZ16_RS25090 (21889) | 21889..22080 | + | 192 | WP_254521341.1 | hypothetical protein | - |
| NLZ16_RS25095 (22408) | 22408..22476 | - | 69 | Protein_29 | pilus protein | - |
| NLZ16_RS25100 (22845) | 22845..23372 | + | 528 | WP_001276116.1 | single-stranded DNA-binding protein | - |
| NLZ16_RS25105 (23430) | 23430..23663 | + | 234 | WP_000006012.1 | DUF905 family protein | - |
| NLZ16_RS25110 (23722) | 23722..25680 | + | 1959 | WP_001145458.1 | ParB/RepB/Spo0J family partition protein | - |
| NLZ16_RS25115 (25735) | 25735..26169 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| NLZ16_RS25120 (26166) | 26166..26885 | + | 720 | WP_001276260.1 | plasmid SOS inhibition protein A | - |
| NLZ16_RS25125 (27015) | 27015..28190 | + | 1176 | WP_000942657.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| NLZ16_RS25130 (28637) | 28637..29137 | + | 501 | WP_000117611.1 | antirestriction protein ArdA | - |
| NLZ16_RS25135 (29866) | 29866..30300 | + | 435 | WP_000218863.1 | hypothetical protein | - |
| NLZ16_RS25140 (30394) | 30394..30660 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| NLZ16_RS25145 (30725) | 30725..31603 | + | 879 | WP_241360070.1 | Recombination-promoting nuclease RpnA | VF |
| NLZ16_RS25150 (31665) | 31665..31871 | + | 207 | WP_001532090.1 | hypothetical protein | VF |
| NLZ16_RS25155 (31902) | 31902..32153 | - | 252 | WP_000148286.1 | helix-turn-helix transcriptional regulator | - |
| NLZ16_RS25160 (32262) | 32262..32489 | - | 228 | WP_001455299.1 | hypothetical protein | - |
| NLZ16_RS25165 (32733) | 32733..33581 | + | 849 | WP_001077032.1 | DUF4942 domain-containing protein | - |
| NLZ16_RS25170 (33667) | 33667..34002 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| NLZ16_RS25175 (34236) | 34236..34568 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| NLZ16_RS25180 (34579) | 34579..37278 | + | 2700 | WP_001474686.1 | Protein TraI | Relaxase |
| NLZ16_RS25185 (37315) | 37315..39606 | - | 2292 | WP_001289271.1 | F-type conjugative transfer protein TrbC | - |
| NLZ16_RS25190 (39599) | 39599..40669 | - | 1071 | WP_000151575.1 | IncI1-type conjugal transfer protein TrbB | - |
| NLZ16_RS25195 (40688) | 40688..41896 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| - (42076) | 42076..42138 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (42076) | 42076..42138 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (42076) | 42076..42138 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| - (42076) | 42076..42138 | - | 63 | NuclAT_0 | - | Antitoxin Detail |
| NLZ16_RS25200 (42188) | 42188..42340 | + | 153 | WP_001303307.1 | Hok/Gef family protein | Toxin Detail |
| NLZ16_RS25205 (42412) | 42412..42663 | - | 252 | WP_001291965.1 | hypothetical protein | - |
| - (43050) | 43050..43101 | - | 52 | NuclAT_1 | - | - |
| - (43050) | 43050..43101 | - | 52 | NuclAT_1 | - | - |
| - (43050) | 43050..43101 | - | 52 | NuclAT_1 | - | - |
| - (43050) | 43050..43101 | - | 52 | NuclAT_1 | - | - |
| NLZ16_RS25210 (43587) | 43587..43763 | - | 177 | WP_001054900.1 | hypothetical protein | - |
| NLZ16_RS25215 (44155) | 44155..44364 | + | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| NLZ16_RS25220 (44436) | 44436..45098 | - | 663 | WP_045721922.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| NLZ16_RS25225 (45163) | 45163..47325 | - | 2163 | WP_045721921.1 | DotA/TraY family protein | - |
| NLZ16_RS25230 (47422) | 47422..48006 | - | 585 | WP_001037998.1 | conjugal transfer protein TraX | - |
| NLZ16_RS25235 (48035) | 48035..49237 | - | 1203 | WP_001189158.1 | IncI1-type conjugal transfer protein TraW | - |
| NLZ16_RS25240 (49204) | 49204..49818 | - | 615 | WP_000337394.1 | IncI1-type conjugal transfer protein TraV | - |
| NLZ16_RS25245 (49818) | 49818..52862 | - | 3045 | WP_001024752.1 | IncI1-type conjugal transfer protein TraU | - |
| NLZ16_RS25250 (52952) | 52952..53752 | - | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| NLZ16_RS25255 (53736) | 53736..53924 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| NLZ16_RS25260 (53988) | 53988..54392 | - | 405 | WP_001422824.1 | IncI1-type conjugal transfer protein TraR | - |
| NLZ16_RS25265 (54443) | 54443..54970 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| NLZ16_RS25270 (54970) | 54970..55674 | - | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| NLZ16_RS25275 (55674) | 55674..56963 | - | 1290 | WP_001271997.1 | conjugal transfer protein TraO | - |
| NLZ16_RS25280 (56966) | 56966..57949 | - | 984 | WP_001191878.1 | hypothetical protein | VF |
| NLZ16_RS25285 (57960) | 57960..58652 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| NLZ16_RS25290 (58649) | 58649..58996 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| NLZ16_RS25295 (59014) | 59014..62778 | - | 3765 | WP_241360061.1 | DUF5710 domain-containing protein | - |
| NLZ16_RS25300 (62868) | 62868..63419 | - | 552 | WP_000014586.1 | Phospholipase D | VF |
| NLZ16_RS25305 (63434) | 63434..63724 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| NLZ16_RS25310 (63721) | 63721..64869 | - | 1149 | WP_001024972.1 | putative protein YggR | VF |
| NLZ16_RS25315 (64866) | 64866..65684 | - | 819 | WP_032220737.1 | hypothetical protein | VF |
| NLZ16_RS25320 (65681) | 65681..66139 | - | 459 | WP_241360060.1 | hypothetical protein | VF |
| NLZ16_RS25325 (66534) | 66534..67118 | - | 585 | WP_045133143.1 | lipopolysaccharide core heptose(II)-phosphate phosphatase | - |
| NLZ16_RS25330 (67178) | 67178..68380 | - | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| NLZ16_RS25335 (68466) | 68466..69290 | - | 825 | WP_001690630.1 | conjugal transfer protein TraE | - |
| NLZ16_RS25340 (69441) | 69441..70595 | - | 1155 | WP_001139955.1 | site-specific integrase | - |
| NLZ16_RS25345 (72229) | 72229..73665 | - | 1437 | WP_015058206.1 | hypothetical protein | VF |
| NLZ16_RS25350 (73653) | 73653..74309 | - | 657 | WP_001193549.1 | hypothetical protein | VF |
| NLZ16_RS25355 (74294) | 74294..74854 | - | 561 | WP_000014005.1 | hypothetical protein | VF |
| NLZ16_RS25360 (74864) | 74864..75478 | - | 615 | WP_000908226.1 | hypothetical protein | VF |
| NLZ16_RS25365 (75495) | 75495..76580 | - | 1086 | WP_001208802.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| NLZ16_RS25370 (76593) | 76593..78146 | - | 1554 | WP_000362206.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| NLZ16_RS25375 (78157) | 78157..78609 | - | 453 | WP_001247337.1 | hypothetical protein | VF |
| NLZ16_RS25380 (78596) | 78596..79891 | - | 1296 | WP_000752780.1 | type 4b pilus protein PilO2 | - |
| NLZ16_RS25385 (79884) | 79884..81566 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| NLZ16_RS25390 (81580) | 81580..82017 | - | 438 | WP_000539807.1 | hypothetical protein | VF |
| NLZ16_RS25395 (82017) | 82017..83084 | - | 1068 | WP_001360287.1 | hypothetical protein | VF |
| NLZ16_RS25400 (84056) | 84056..84475 | - | 420 | WP_072115345.1 | PilI type IV pilus biogenesis protein | - |
| NLZ16_RS25405 (84602) | 84602..85285 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| NLZ16_RS25410 (85538) | 85538..86071 | - | 534 | WP_001306770.1 | transcription termination/antitermination NusG family protein | - |
| NLZ16_RS25415 (86513) | 86513..86800 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| NLZ16_RS25420 (86718) | 86718..86948 | - | 231 | WP_228772074.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|