MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 170947 bp
Accession: NZ_CP100139 Location: 1..170947 Organism: Burkholderia glumae strain R93 Replicon: plasmid p932p
Accession: NZ_CP100139 Location: 1..170947 Organism: Burkholderia glumae strain R93 Replicon: plasmid p932p
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NIV78_RS29935 | 101..745 | + | 645 | WP_017432350.1 | AAA family ATPase | - |
| NIV78_RS29940 | 748..1785 | + | 1038 | WP_017432351.1 | ParB/RepB/Spo0J family partition protein | - |
| NIV78_RS29945 | 1870..3174 | - | 1305 | WP_017432352.1 | replication initiation protein | - |
| NIV78_RS29950 | 4703..5602 | - | 900 | WP_257758134.1 | Crp/Fnr family transcriptional regulator | - |
| NIV78_RS29955 | 6019..7356 | - | 1338 | WP_017923863.1 | DUF1173 domain-containing protein | - |
| NIV78_RS29960 | 7371..7790 | - | 420 | WP_237657883.1 | hypothetical protein | - |
| NIV78_RS29965 | 7787..8440 | - | 654 | WP_017923861.1 | hypothetical protein | - |
| NIV78_RS29970 | 8457..9665 | - | 1209 | WP_257758135.1 | Autotransporter adhesin UpaG | VF |
| NIV78_RS29975 | 9708..9761 | - | 54 | Protein_8 | hypothetical protein | - |
| NIV78_RS29980 | 9829..10557 | - | 729 | WP_252836676.1 | IS6 family transposase ISDge13 | Transposase |
| NIV78_RS29985 | 10600..11244 | + | 645 | WP_254220801.1 | site-specific integrase | - |
| NIV78_RS29990 | 11347..11754 | + | 408 | WP_230674618.1 | hypothetical protein | - |
| NIV78_RS29995 | 12017..12268 | + | 252 | WP_012734108.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| NIV78_RS30000 | 12262..12612 | + | 351 | WP_012734107.1 | type II toxin-antitoxin system ChpB family toxin | Toxin Detail |
| NIV78_RS30005 | 12671..12865 | + | 195 | WP_124837685.1 | hypothetical protein | - |
| NIV78_RS30010 | 13015..13236 | + | 222 | WP_017433768.1 | hypothetical protein | - |
| NIV78_RS30015 | 13459..13923 | + | 465 | WP_012734106.1 | Lrp/AsnC family transcriptional regulator | - |
| NIV78_RS30020 | 14225..16612 | + | 2388 | WP_051071184.1 | TonB-dependent receptor | - |
| NIV78_RS30025 | 16644..17390 | + | 747 | WP_232252306.1 | hypothetical protein | VF |
| NIV78_RS30030 | 17414..18148 | + | 735 | WP_012733849.1 | MotA/TolQ/ExbB proton channel family protein | - |
| NIV78_RS30035 | 18163..18585 | + | 423 | WP_012734103.1 | biopolymer transporter ExbD | - |
| NIV78_RS30040 | 18693..20354 | + | 1662 | WP_257758136.1 | ABC transporter ATP-binding protein/permease | - |
| NIV78_RS30045 | 20436..21674 | + | 1239 | WP_100556612.1 | thioredoxin | - |
| NIV78_RS30050 | 21972..22340 | + | 369 | Protein_23 | IS6 family transposase | - |
| NIV78_RS30055 | 22496..23611 | - | 1116 | WP_012734101.1 | dimethyl sulfone monooxygenase SfnG | - |
| NIV78_RS30060 | 23641..24264 | - | 624 | WP_045678665.1 | FMN reductase | - |
| NIV78_RS30065 | 25103..26218 | + | 1116 | WP_017923789.1 | Transcriptional regulatory protein ZraR | VF |
| NIV78_RS30070 | 26578..26838 | + | 261 | WP_237657893.1 | tyrosine-type recombinase/integrase | - |
| NIV78_RS30075 | 27160..28224 | + | 1065 | Protein_28 | IS21 family transposase ISAlisp1 | Transposase |
| NIV78_RS30080 | 28337..29086 | - | 750 | WP_006400877.1 | IS21 family transposase ISBmu3 | Transposase |
| NIV78_RS30085 | 29102..30652 | - | 1551 | WP_153477359.1 | IS21 family transposase ISBmu3 | Transposase |
| NIV78_RS30090 | 30701..30838 | + | 138 | WP_017924734.1 | hypothetical protein | - |
| NIV78_RS30095 | 30985..31395 | + | 411 | Protein_32 | IS21 family transposase ISAav1 | Transposase |
| NIV78_RS30100 | 31388..32185 | + | 798 | WP_012732720.1 | IS21 family transposase ISPa65 | Transposase |
| NIV78_RS30105 | 32665..32763 | + | 99 | Protein_34 | IS6 family transposase | - |
| NIV78_RS30110 | 32932..33711 | - | 780 | WP_157384131.1 | TIM barrel protein | - |
| NIV78_RS30115 | 33767..34399 | - | 633 | WP_039202354.1 | 3-isopropylmalate dehydratase small subunit | - |
| NIV78_RS30120 | 34402..35826 | - | 1425 | WP_017923146.1 | 3-isopropylmalate dehydratase large subunit | - |
| NIV78_RS30125 | 35870..37042 | - | 1173 | WP_039202356.1 | CaiB/BaiF CoA-transferase family protein | - |
| NIV78_RS30130 | 37114..38697 | - | 1584 | WP_017923148.1 | 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase | VF |
| NIV78_RS30135 | 38758..39564 | - | 807 | WP_017923149.1 | citryl-CoA lyase | - |
| NIV78_RS30140 | 39583..40461 | - | 879 | WP_017923150.1 | intradiol ring-cleavage dioxygenase | - |
| NIV78_RS30145 | 40636..41553 | + | 918 | WP_039202362.1 | HTH-type transcriptional regulator CynR | VF |
| NIV78_RS30150 | 41796..43118 | + | 1323 | WP_171467056.1 | IS701 family transposase ISCARN42 | Transposase |
| NIV78_RS30155 | 43763..44248 | + | 486 | Protein_44 | IS66 family transposase zinc-finger binding domain-containing protein | - |
| NIV78_RS30160 | 44326..44976 | + | 651 | WP_257758140.1 | IS66 family transposase ISPre3 | Transposase |
| NIV78_RS30165 | 45061..46317 | + | 1257 | WP_012734039.1 | IS21 family transposase ISBcen28 | Transposase |
| NIV78_RS30170 | 46314..47180 | + | 867 | WP_012732871.1 | IS21 family transposase ISBcen28 | Transposase |
| NIV78_RS30175 | 47248..47867 | - | 620 | Protein_48 | IS5 family transposase IS1421 | Transposase |
| NIV78_RS30180 | 48733..48987 | + | 255 | WP_012734091.1 | antitoxin | - |
| NIV78_RS30185 | 48978..49388 | + | 411 | WP_039203971.1 | type II toxin-antitoxin system VapC family toxin | - |
| NIV78_RS30190 | 49451..49768 | + | 318 | WP_017925051.1 | hypothetical protein | - |
| NIV78_RS30195 | 49803..50183 | + | 381 | WP_257758141.1 | hypothetical protein | - |
| NIV78_RS30200 | 50180..52003 | + | 1824 | WP_039203972.1 | site-specific integrase | - |
| NIV78_RS30205 | 52046..52255 | + | 210 | WP_017925019.1 | hypothetical protein | - |
| NIV78_RS30210 | 52471..53154 | + | 684 | WP_124837551.1 | IS6 family transposase ISDge13 | Transposase |
| NIV78_RS30215 | 53561..56068 | + | 2508 | WP_039203083.1 | type VI secretion system Vgr family protein | - |
| NIV78_RS30220 | 56121..59024 | + | 2904 | WP_171467053.1 | SH3 domain-containing protein | - |
| NIV78_RS30225 | 59032..59568 | + | 537 | WP_017924909.1 | hypothetical protein | - |
| NIV78_RS30230 | 59581..59820 | + | 240 | WP_257758144.1 | hypothetical protein | VF |
| NIV78_RS30235 | 59853..60581 | - | 729 | WP_252836676.1 | IS6 family transposase ISDge13 | Transposase |
| NIV78_RS30240 | 61057..61320 | - | 264 | WP_017432678.1 | hypothetical protein | - |
| NIV78_RS30245 | 61329..61652 | - | 324 | WP_080630273.1 | DNA-binding protein Bv3F | VF |
| NIV78_RS30250 | 61788..63152 | + | 1365 | Protein_63 | error-prone DNA polymerase | - |
| NIV78_RS30260 | 64501..65967 | + | 1467 | WP_039203994.1 | 3'-5' exonuclease | - |
| NIV78_RS30265 | 66025..66492 | + | 468 | Protein_66 | IS5 family transposase IS1421 | Transposase |
| NIV78_RS30270 | 66499..68964 | - | 2466 | WP_012732758.1 | Baeyer-Villiger monooxygenase | VF |
| NIV78_RS30275 | 68951..70651 | - | 1701 | WP_012732757.1 | GMC family oxidoreductase N-terminal domain-containing protein | - |
| NIV78_RS30280 | 70678..72099 | - | 1422 | WP_012732756.1 | coniferyl aldehyde dehydrogenase | - |
| NIV78_RS30285 | 72244..73296 | + | 1053 | WP_012732755.1 | AraC family transcriptional regulator | - |
| NIV78_RS30290 | 73525..74001 | + | 477 | WP_039203908.1 | IS66 family transposase ISRtr5 | Transposase |
| NIV78_RS30295 | 73977..74327 | + | 351 | WP_012732753.1 | IS66 family transposase ISBmu30 | Transposase |
| NIV78_RS30300 | 74359..75915 | + | 1557 | WP_171467055.1 | IS66 family transposase ISAeh1 | Transposase |
| NIV78_RS30305 | 75937..76131 | + | 195 | Protein_74 | ISL3 family transposase ISRta1 | Transposase |
| NIV78_RS30310 | 76162..77820 | - | 1659 | WP_051071153.1 | CocE/NonD family hydrolase | - |
| NIV78_RS30315 | 78314..79231 | + | 918 | WP_017923352.1 | transporter | - |
| NIV78_RS30320 | 79313..79871 | - | 559 | Protein_77 | plasmid pRiA4b ORF-3 family protein | - |
| NIV78_RS30325 | 79883..80122 | - | 240 | Protein_78 | IS66 family transposase ISBcen14 | Transposase |
| NIV78_RS30330 | 80191..81057 | - | 867 | WP_012732871.1 | IS21 family transposase ISBcen28 | Transposase |
| NIV78_RS30335 | 81054..82310 | - | 1257 | WP_012734039.1 | IS21 family transposase ISBcen28 | Transposase |
| NIV78_RS30340 | 82435..82626 | + | 192 | Protein_81 | IS5 family transposase IS1421 | Transposase |
| NIV78_RS30345 | 82773..83555 | - | 783 | WP_012734088.1 | helix-turn-helix transcriptional regulator | - |
| NIV78_RS30350 | 83658..84317 | + | 660 | WP_012734087.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| NIV78_RS30355 | 84453..85074 | + | 622 | Protein_84 | DDE-type integrase/transposase/recombinase | - |
| NIV78_RS30360 | 85379..86926 | + | 1548 | WP_012734086.1 | Methyl-accepting chemotaxis protein I | VF |
| NIV78_RS30365 | 87286..87786 | + | 501 | WP_012734085.1 | hypothetical protein | VF |
| NIV78_RS30370 | 87984..88271 | + | 288 | WP_017924497.1 | hypothetical protein | - |
| NIV78_RS30375 | 88464..88754 | + | 291 | WP_230674603.1 | DDE-type integrase/transposase/recombinase | - |
| NIV78_RS30380 | 89013..89153 | - | 141 | WP_080569432.1 | integrase | - |
| NIV78_RS30385 | 89216..89747 | - | 532 | Protein_90 | IS3 family transposase ISBvi3 | Transposase |
| NIV78_RS30390 | 89869..90048 | + | 180 | Protein_91 | hypothetical protein | - |
| NIV78_RS30400 | 91007..92854 | - | 1848 | WP_012734082.1 | clostripain-related cysteine peptidase | - |
| NIV78_RS30405 | 92950..94437 | - | 1488 | WP_124837819.1 | hypothetical protein | - |
| NIV78_RS30410 | 95111..95914 | - | 804 | Protein_95 | IS5 family transposase | - |
| NIV78_RS30415 | 96129..96866 | + | 738 | WP_017423070.1 | Regulatory protein AtoC | VF |
| NIV78_RS30420 | 97086..97865 | + | 780 | WP_012734079.1 | Alkaline phosphatase synthesis transcriptional regulatory protein PhoP | VF |
| NIV78_RS30425 | 98015..100549 | + | 2535 | WP_230674415.1 | Virulence sensor protein BvgS | VF |
| NIV78_RS30430 | 100581..100913 | - | 333 | Protein_99 | IS3 family transposase IS1416 | Transposase |
| NIV78_RS30435 | 100940..101191 | - | 252 | Protein_100 | transposase domain-containing protein | - |
| NIV78_RS30440 | 101275..101709 | + | 435 | WP_257758129.1 | IS66 family transposase ISRm2 | Transposase |
| NIV78_RS30445 | 101719..103275 | - | 1557 | WP_012732752.1 | IS66 family transposase ISAeh1 | Transposase |
| NIV78_RS30450 | 103307..103657 | - | 351 | WP_012732753.1 | IS66 family transposase ISBmu30 | Transposase |
| NIV78_RS30455 | 103633..104109 | - | 477 | WP_039203908.1 | IS66 family transposase ISRtr5 | Transposase |
| NIV78_RS30460 | 104199..104898 | - | 700 | Protein_105 | IS3 family transposase | - |
| NIV78_RS30830 | 104998..106557 | - | 1560 | WP_012734076.1 | Aerotaxis receptor | VF |
| NIV78_RS30475 | 107406..107787 | + | 382 | Protein_107 | transposase | - |
| NIV78_RS30480 | 108114..108602 | - | 489 | WP_080569430.1 | hypothetical protein | - |
| NIV78_RS30485 | 108821..110545 | - | 1725 | WP_039204250.1 | Methyl-accepting chemotaxis protein I | VF |
| NIV78_RS30490 | 110721..112418 | - | 1698 | WP_012732723.1 | Methyl-accepting chemotaxis protein I | VF |
| NIV78_RS30495 | 112458..112802 | - | 345 | WP_017432531.1 | hypothetical protein | - |
| NIV78_RS30500 | 113285..114868 | + | 1584 | WP_012732724.1 | Methyl-accepting chemotaxis protein IV | VF |
| NIV78_RS30505 | 114992..116090 | - | 1099 | Protein_113 | tyrosine-type recombinase/integrase | - |
| NIV78_RS30510 | 116386..116982 | - | 597 | WP_236577948.1 | HD-GYP domain-containing protein | - |
| NIV78_RS30520 | 118302..119321 | + | 1020 | WP_045678676.1 | IS110 family transposase IS884 | Transposase |
| NIV78_RS30525 | 119680..120975 | - | 1296 | WP_012734070.1 | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | - |
| NIV78_RS30530 | 121125..121391 | + | 267 | Protein_118 | IS1182 family transposase ISThsp18 | Transposase |
| NIV78_RS30535 | 121507..122322 | - | 816 | WP_035976812.1 | sulfotransferase | - |
| NIV78_RS30540 | 122395..123078 | - | 684 | WP_012734068.1 | putative adenylyl-sulfate kinase | VF |
| NIV78_RS30545 | 124075..125628 | + | 1554 | WP_245163844.1 | IS91 family transposase ISAzo26 | Transposase |
| NIV78_RS30550 | 125668..125958 | + | 291 | WP_017425259.1 | Tn3 family transposase TnpR_ISThsp9 | Transposase |
| NIV78_RS30555 | 126083..126754 | + | 672 | WP_012734065.1 | site-specific integrase | - |
| NIV78_RS30560 | 126866..127114 | + | 249 | WP_012734064.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| NIV78_RS30565 | 127108..127428 | + | 321 | WP_012734063.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| NIV78_RS30570 | 127440..127703 | + | 264 | WP_017433216.1 | hypothetical protein | - |
| NIV78_RS30575 | 127716..127958 | + | 243 | WP_012734062.1 | hypothetical protein | - |
| NIV78_RS30580 | 128022..128324 | + | 303 | WP_124837730.1 | hypothetical protein | - |
| NIV78_RS30585 | 128394..128588 | + | 195 | WP_124837731.1 | hypothetical protein | - |
| NIV78_RS30595 | 129593..130390 | - | 798 | WP_012732720.1 | IS21 family transposase ISPa65 | Transposase |
| NIV78_RS30600 | 130383..130679 | - | 297 | Protein_132 | IS21 family transposase ISAav1 | Transposase |
| NIV78_RS30605 | 130706..132262 | - | 1557 | WP_012732752.1 | IS66 family transposase ISAeh1 | Transposase |
| NIV78_RS30610 | 132294..132644 | - | 351 | WP_012732753.1 | IS66 family transposase ISBmu30 | Transposase |
| NIV78_RS30615 | 132620..133096 | - | 477 | WP_012734051.1 | IS66 family transposase ISRtr5 | Transposase |
| NIV78_RS30620 | 133186..133602 | - | 417 | Protein_136 | IS21 family transposase ISLisp1 | Transposase |
| NIV78_RS30630 | 134517..135317 | - | 801 | Protein_138 | IS21 family transposase ISAlisp1 | Transposase |
| NIV78_RS30635 | 135408..135659 | + | 252 | Protein_139 | integrase core domain-containing protein | - |
| NIV78_RS30640 | 135688..136833 | - | 1146 | WP_017923366.1 | DUF2827 domain-containing protein | - |
| NIV78_RS30645 | 136848..137957 | - | 1110 | WP_017923365.1 | DUF2827 domain-containing protein | - |
| NIV78_RS30650 | 138387..138752 | - | 366 | WP_244102839.1 | DNA-binding protein Bv3F | VF |
| NIV78_RS30655 | 139068..140306 | - | 1239 | WP_017923362.1 | tetratricopeptide repeat protein | - |
| NIV78_RS30660 | 140729..145126 | - | 4398 | WP_276585518.1 | YadA-like family protein | - |
| NIV78_RS30665 | 145363..146082 | - | 720 | WP_080630261.1 | response regulator transcription factor | - |
| NIV78_RS30670 | 147275..148162 | + | 888 | WP_039202686.1 | Rhamnosyltransferase 1 subunit A | VF |
| NIV78_RS30675 | 148309..149667 | + | 1359 | WP_039202683.1 | Glycosyltransferase GtfC | VF |
| NIV78_RS30680 | 149790..151304 | + | 1515 | WP_063778003.1 | putative multidrug resistance protein EmrY | VF |
| NIV78_RS30685 | 151362..152300 | + | 939 | WP_017924488.1 | hypothetical protein | VF |
| NIV78_RS30690 | 152297..153853 | + | 1557 | WP_039202682.1 | efflux transporter outer membrane subunit | - |
| NIV78_RS30695 | 153858..155051 | + | 1194 | WP_017923420.1 | Multidrug export protein EmrA | VF |
| NIV78_RS30700 | 156234..156551 | - | 318 | Protein_152 | integrase core domain-containing protein | - |
| NIV78_RS30705 | 156733..157209 | + | 477 | WP_012734051.1 | IS66 family transposase ISRtr5 | Transposase |
| NIV78_RS30710 | 157185..157535 | + | 351 | WP_012732753.1 | IS66 family transposase ISBmu30 | Transposase |
| NIV78_RS30715 | 157567..159123 | + | 1557 | WP_012732752.1 | IS66 family transposase ISAeh1 | Transposase |
| NIV78_RS30720 | 159045..159383 | + | 339 | Protein_156 | IS6 family transposase ISApr5 | Transposase |
| NIV78_RS30725 | 159600..160328 | + | 729 | WP_252836676.1 | IS6 family transposase ISDge13 | Transposase |
| NIV78_RS30730 | 160369..160614 | - | 246 | WP_171467079.1 | hypothetical protein | - |
| NIV78_RS30735 | 160632..161195 | - | 564 | WP_012735346.1 | hypothetical protein | - |
| NIV78_RS30740 | 161210..161611 | - | 402 | WP_012735347.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| NIV78_RS30745 | 161611..161847 | - | 237 | WP_017924531.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| NIV78_RS30750 | 162279..163988 | - | 1710 | WP_153479184.1 | Methyl-accepting chemotaxis protein I | VF |
| NIV78_RS30755 | 164202..164609 | - | 408 | WP_230674553.1 | hypothetical protein | - |
| NIV78_RS30760 | 164712..166547 | - | 1836 | WP_257758146.1 | site-specific integrase | - |
| NIV78_RS30765 | 166550..166891 | - | 342 | WP_257758096.1 | hypothetical protein | - |
| NIV78_RS30770 | 166948..167193 | - | 246 | WP_127913916.1 | hypothetical protein | - |
| NIV78_RS30775 | 167190..167432 | - | 243 | WP_124837682.1 | hypothetical protein | - |
| NIV78_RS30780 | 167446..167730 | - | 285 | WP_017432347.1 | hypothetical protein | - |
| NIV78_RS30785 | 168137..168625 | - | 489 | WP_012732893.1 | GNAT family N-acetyltransferase | - |
| NIV78_RS30790 | 168622..168891 | - | 270 | WP_012732894.1 | DUF1778 domain-containing protein | - |
| NIV78_RS30795 | 169097..169282 | - | 186 | WP_153479281.1 | hypothetical protein | - |
| NIV78_RS30800 | 169767..170369 | + | 603 | WP_127913917.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|