MGE detailed information
MGE type: Prophage MGE length: 23494 bp
Accession: NZ_CP099588 Location: 2216211..2239704 Organism: Escherichia coli strain EMG2 Replicon: chromosome
Accession: NZ_CP099588 Location: 2216211..2239704 Organism: Escherichia coli strain EMG2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NHF38_RS10625 (2211462) | 2211462..2212172 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| NHF38_RS10630 (2212175) | 2212175..2212735 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| NHF38_RS10635 (2212770) | 2212770..2213111 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| NHF38_RS10640 (2213246) | 2213246..2213572 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| NHF38_RS10645 (2213778) | 2213778..2214992 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| NHF38_RS10650 (2215004) | 2215004..2216023 | + | 1020 | WP_000836066.1 | Zn-dependent oxidoreductase | - |
| NHF38_RS10655 (2216211) | 2216211..2217368 | - | 1158 | Protein_2093 | Putative defective protein IntQ ; Integrase | Integrase |
| NHF38_RS10660 (2217382) | 2217382..2218077 | - | 696 | Protein_2094 | IS3 family transposase IS2 | Transposase |
| NHF38_RS10665 (2218074) | 2218074..2218841 | - | 768 | Protein_2095 | exonuclease | - |
| NHF38_RS10670 (2218934) | 2218934..2219125 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| NHF38_RS10675 (2219122) | 2219122..2219310 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| NHF38_RS10680 (2219878) | 2219878..2220096 | - | 219 | WP_001171942.1 | protein YdfC | - |
| NHF38_RS23305 (2220126) | 2220126..2220254 | - | 129 | WP_000344964.1 | protein YdfB | - |
| NHF38_RS10685 (2220256) | 2220256..2220411 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| NHF38_RS10690 (2220578) | 2220578..2220985 | - | 408 | WP_000448564.1 | DNA-binding transcriptional dual regulator DicA | - |
| NHF38_RS10695 (2221069) | 2221069..2221299 | + | 231 | WP_000920568.1 | dicB transcriptional regulator DicC | - |
| NHF38_RS10700 (2221283) | 2221283..2221561 | + | 279 | Protein_2103 | protein YdfX | - |
| NHF38_RS10705 (2221596) | 2221596..2221745 | + | 150 | WP_011443592.1 | protein YdfW | - |
| NHF38_RS10710 (2222182) | 2222182..2222514 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| NHF38_RS10715 (2222717) | 2222717..2223022 | - | 306 | WP_001326990.1 | protein YdfV | - |
| NHF38_RS10720 (2223047) | 2223047..2223286 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| NHF38_RS10725 (2223286) | 2223286..2223573 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| NHF38_RS10730 (2223645) | 2223645..2223800 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| NHF38_RS10735 (2224017) | 2224017..2224268 | + | 252 | WP_000980994.1 | protein Rem | - |
| NHF38_RS10740 (2224335) | 2224335..2224613 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| NHF38_RS10745 (2224615) | 2224615..2225664 | + | 1050 | WP_001393597.1 | DUF968 domain-containing protein | - |
| NHF38_RS10750 (2225678) | 2225678..2226430 | + | 753 | WP_001047135.1 | antitermination protein | - |
| NHF38_RS10755 (2226708) | 2226708..2226797 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| NHF38_RS10760 (2226852) | 2226852..2227064 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| NHF38_RS10765 (2227365) | 2227365..2227580 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| NHF38_RS10770 (2227944) | 2227944..2228114 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| NHF38_RS10775 (2228334) | 2228334..2228549 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| NHF38_RS10780 (2228554) | 2228554..2228865 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| NHF38_RS10785 (2228862) | 2228862..2229395 | + | 534 | WP_001092971.1 | lysozyme | - |
| NHF38_RS10790 (2229392) | 2229392..2229889 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| NHF38_RS10795 (2230252) | 2230252..2230464 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| NHF38_RS10800 (2230475) | 2230475..2230663 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| NHF38_RS10805 (2230666) | 2230666..2230731 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| NHF38_RS10810 (2230810) | 2230810..2230965 | + | 156 | WP_001309517.1 | protein YnfN | - |
| NHF38_RS10815 (2231137) | 2231137..2231310 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| NHF38_RS10820 (2231462) | 2231462..2231872 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| NHF38_RS10825 (2231930) | 2231930..2232163 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| NHF38_RS10830 (2232552) | 2232552..2233121 | + | 570 | WP_000453612.1 | DNA-packaging protein | - |
| NHF38_RS10835 (2233072) | 2233072..2234034 | + | 963 | WP_001027733.1 | phage tail protein | - |
| NHF38_RS10840 (2234034) | 2234034..2234609 | + | 576 | WP_000885611.1 | tail fiber assembly protein | - |
| NHF38_RS10845 (2234707) | 2234707..2235297 | - | 591 | WP_000078177.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| NHF38_RS10850 (2235614) | 2235614..2235847 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| NHF38_RS10855 (2235916) | 2235916..2236029 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| NHF38_RS10860 (2236550) | 2236550..2237917 | + | 1368 | Protein_2135 | MHS family MFS transporter | - |
| NHF38_RS10865 (2238006) | 2238006..2239466 | + | 1461 | WP_000527743.1 | mannitol dehydrogenase family protein | - |
| NHF38_RS10870 (2239501) | 2239501..2239704 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| NHF38_RS10875 (2239881) | 2239881..2240567 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| NHF38_RS10880 (2240656) | 2240656..2241402 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
| NHF38_RS10885 (2241539) | 2241539..2243584 | + | 2046 | WP_000210373.1 | peptidyl-dipeptidase Dcp | - |
| NHF38_RS10890 (2243628) | 2243628..2244146 | - | 519 | WP_001024746.1 | 2-oxo-tetronate isomerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Prophage | TA20026 | CP009789 | 1611431..1634475 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 | Prophage | TA21438 | NC_007779 | 1632716..1654422 | 0.002 | |
| Escherichia coli DH1 | Prophage | TA27404 | NC_017638 | 1615804..1634890 | 0.005 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Prophage | TA68425 | NZ_CP017979 | 1534772..1559021 | 0.004 | |
| Escherichia coli strain DH5alpha | Prophage | TA90479 | NZ_CP025520 | 488442..510148 | 0.002 |