MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 72595 bp
Accession: NZ_CP099346 Location: 1..72595 Organism: Escherichia marmotae strain RHB35-E2-C08 Replicon: plasmid unnamed2
Accession: NZ_CP099346 Location: 1..72595 Organism: Escherichia marmotae strain RHB35-E2-C08 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFK54_RS24215 (1) | 1..858 | + | 858 | WP_279283696.1 | incFII family plasmid replication initiator RepA | - |
| NFK54_RS24220 (2587) | 2587..3177 | - | 591 | WP_279283676.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| NFK54_RS24225 (3338) | 3338..6322 | + | 2985 | WP_273785354.1 | Tn3 family transposase TnpA_ISSba14 | Transposase |
| NFK54_RS24230 (6543) | 6543..7034 | + | 492 | WP_279283707.1 | type IV secretion protein Rhs | - |
| NFK54_RS24235 (7031) | 7031..7423 | + | 393 | WP_279283697.1 | hypothetical protein | - |
| NFK54_RS24240 (7436) | 7436..7969 | + | 534 | WP_107136013.1 | Major exported protein | VF |
| NFK54_RS24245 (9046) | 9046..9282 | - | 237 | WP_279283698.1 | protein L | - |
| NFK54_RS24250 (9301) | 9301..9561 | - | 261 | WP_279283699.1 | hypothetical protein | - |
| NFK54_RS24255 (9783) | 9783..10028 | + | 246 | WP_279283700.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| NFK54_RS24260 (10009) | 10009..10284 | + | 276 | WP_279283701.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| NFK54_RS24265 (10509) | 10509..11078 | + | 570 | Protein_10 | replication initiation protein | - |
| NFK54_RS24270 (11231) | 11231..11899 | + | 669 | WP_279283702.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| NFK54_RS24275 (11926) | 11926..12438 | + | 513 | WP_063101691.1 | molecular chaperone Tir | - |
| NFK54_RS24280 (12537) | 12537..13373 | - | 837 | WP_279283703.1 | DUF6430 domain-containing protein | - |
| NFK54_RS24285 (13482) | 13482..13664 | + | 183 | Protein_14 | resolvase | - |
| NFK54_RS24290 (13743) | 13743..13991 | - | 249 | Protein_15 | iron-containing alcohol dehydrogenase | - |
| NFK54_RS24295 (14076) | 14076..14699 | - | 624 | WP_279283704.1 | potassium channel family protein | - |
| NFK54_RS24300 (15576) | 15576..16583 | + | 1008 | WP_279283705.1 | hypothetical protein | - |
| NFK54_RS24305 (16654) | 16654..17049 | - | 396 | WP_112031848.1 | plasmid partitioning/stability family protein | - |
| NFK54_RS24310 (17049) | 17049..18008 | - | 960 | WP_000921959.1 | plasmid segregation protein ParM | - |
| NFK54_RS24315 (18448) | 18448..19350 | + | 903 | WP_279283708.1 | DUF1281 domain-containing protein | - |
| NFK54_RS24320 (19347) | 19347..19658 | + | 312 | WP_182140451.1 | hypothetical protein | - |
| NFK54_RS24325 (19735) | 19735..20418 | + | 684 | WP_000085890.1 | DNA methylase | - |
| NFK54_RS24330 (20419) | 20419..20640 | + | 222 | WP_001558391.1 | hypothetical protein | - |
| NFK54_RS24335 (20621) | 20621..21087 | + | 467 | Protein_24 | DUF1380 family protein | - |
| NFK54_RS24340 (21133) | 21133..21909 | + | 777 | WP_228929160.1 | hypothetical protein | - |
| NFK54_RS24345 (22325) | 22325..22750 | + | 426 | WP_021548776.1 | antirestriction protein | - |
| NFK54_RS24350 (22799) | 22799..22990 | + | 192 | WP_021548775.1 | hypothetical protein | - |
| NFK54_RS24355 (22969) | 22969..23442 | - | 474 | Protein_28 | hypothetical protein | - |
| NFK54_RS24360 (23959) | 23959..24186 | + | 228 | WP_000218654.1 | hypothetical protein | - |
| NFK54_RS24365 (24238) | 24238..25599 | + | 1362 | WP_180562525.1 | DUF3560 domain-containing protein | - |
| NFK54_RS24370 (25647) | 25647..26210 | + | 564 | WP_045896587.1 | class I SAM-dependent methyltransferase | - |
| NFK54_RS24375 (26299) | 26299..26733 | - | 435 | Protein_32 | hypothetical protein | - |
| NFK54_RS24380 (26803) | 26803..27009 | + | 207 | WP_024195845.1 | hypothetical protein | - |
| NFK54_RS24385 (27035) | 27035..27574 | + | 540 | WP_045896589.1 | single-stranded DNA-binding protein | - |
| NFK54_RS24390 (27631) | 27631..27864 | + | 234 | WP_001470808.1 | DUF905 domain-containing protein | - |
| NFK54_RS24395 (27928) | 27928..29892 | + | 1965 | WP_279283706.1 | ParB/RepB/Spo0J family partition protein | - |
| NFK54_RS24400 (29961) | 29961..30395 | + | 435 | WP_089587306.1 | conjugation system SOS inhibitor PsiB | - |
| NFK54_RS24405 (30392) | 30392..31154 | + | 763 | Protein_38 | plasmid SOS inhibition protein A | - |
| - (31280) | 31280..31345 | + | 66 | NuclAT_1 | - | Antitoxin Detail |
| - (31123) | 31123..31347 | + | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (31123) | 31123..31347 | + | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (31123) | 31123..31347 | + | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (31123) | 31123..31347 | + | 225 | NuclAT_0 | - | Antitoxin Detail |
| - (31123) | 31123..31347 | - | 225 | NuclAT_0 | - | Antitoxin Detail |
| NFK54_RS24410 (31333) | 31333..31482 | + | 150 | Protein_39 | plasmid maintenance protein Mok | - |
| NFK54_RS24415 (31424) | 31424..31549 | + | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| NFK54_RS24420 (31850) | 31850..32146 | - | 297 | Protein_41 | hypothetical protein | - |
| NFK54_RS24425 (32216) | 32216..32422 | + | 207 | WP_127766627.1 | single-stranded DNA-binding protein | - |
| NFK54_RS24430 (32446) | 32446..32742 | + | 297 | WP_032083169.1 | hypothetical protein | - |
| NFK54_RS24435 (32901) | 32901..33143 | + | 243 | WP_000540591.1 | hypothetical protein | - |
| NFK54_RS24440 (33140) | 33140..33259 | + | 120 | Protein_45 | class I SAM-dependent methyltransferase | - |
| NFK54_RS24445 (33348) | 33348..33764 | - | 417 | Protein_46 | hypothetical protein | - |
| NFK54_RS24450 (33834) | 33834..34040 | + | 207 | WP_279283664.1 | single-stranded DNA-binding protein | - |
| NFK54_RS24455 (34063) | 34063..34359 | + | 297 | WP_001272240.1 | hypothetical protein | - |
| NFK54_RS24460 (34466) | 34466..35287 | + | 822 | WP_001234451.1 | DUF932 domain-containing protein | - |
| NFK54_RS24465 (35566) | 35566..36018 | - | 453 | WP_024212709.1 | hypothetical protein | VF |
| NFK54_RS24470 (36531) | 36531..36926 | + | 396 | WP_001137965.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| NFK54_RS24475 (37088) | 37088..37816 | + | 729 | WP_135403573.1 | hypothetical protein | - |
| NFK54_RS24480 (37901) | 37901..38107 | + | 207 | WP_135403572.1 | TraY domain-containing protein | - |
| NFK54_RS24485 (38409) | 38409..38792 | + | 384 | WP_279283665.1 | type IV conjugative transfer system pilin TraA | - |
| NFK54_RS24490 (38823) | 38823..39122 | + | 300 | WP_001204091.1 | type IV conjugative transfer system protein TraL | - |
| NFK54_RS24495 (39133) | 39133..39711 | + | 579 | WP_000365869.1 | type IV conjugative transfer system protein TraE | - |
| NFK54_RS24500 (39686) | 39686..40465 | + | 780 | WP_279283666.1 | type-F conjugative transfer system secretin TraK | - |
| NFK54_RS24505 (40458) | 40458..41792 | + | 1335 | WP_053272771.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| NFK54_RS24510 (41804) | 41804..42316 | + | 513 | WP_001558300.1 | type IV conjugative transfer system lipoprotein TraV | - |
| NFK54_RS24515 (42313) | 42313..44952 | + | 2640 | WP_279283667.1 | type IV secretion system protein TraC | - |
| NFK54_RS24520 (44931) | 44931..45347 | + | 417 | WP_279283668.1 | type-F conjugative transfer system protein TrbI | - |
| NFK54_RS24525 (45350) | 45350..45574 | + | 225 | WP_000752802.1 | TraR/DksA C4-type zinc finger protein | - |
| NFK54_RS24530 (45571) | 45571..46188 | + | 618 | WP_167780306.1 | type-F conjugative transfer system protein TraW | - |
| NFK54_RS24535 (46185) | 46185..46580 | + | 396 | WP_151567967.1 | hypothetical protein | - |
| NFK54_RS24540 (46577) | 46577..47575 | + | 999 | WP_001558295.1 | conjugal transfer pilus assembly protein TraU | - |
| NFK54_RS24545 (47584) | 47584..48069 | + | 486 | WP_000216829.1 | hypothetical protein | - |
| NFK54_RS24550 (48251) | 48251..48499 | + | 249 | Protein_67 | conjugal transfer protein TraP | - |
| NFK54_RS24555 (48486) | 48486..48803 | + | 318 | Protein_68 | conjugal transfer protein TrbD | - |
| NFK54_RS24560 (48971) | 48971..49576 | + | 606 | WP_250130495.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| NFK54_RS24565 (49573) | 49573..51507 | + | 1935 | WP_279283669.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| NFK54_RS24570 (51509) | 51509..52294 | + | 786 | WP_001247978.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| NFK54_RS24575 (52312) | 52312..52584 | + | 273 | WP_001558287.1 | hypothetical protein | - |
| NFK54_RS24580 (52586) | 52586..53161 | + | 576 | WP_000265824.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| NFK54_RS24585 (53158) | 53158..53547 | + | 390 | WP_001202475.1 | hypothetical protein | - |
| NFK54_RS24590 (53613) | 53613..55019 | + | 1407 | WP_001558285.1 | conjugal transfer pilus assembly protein TraH | - |
| NFK54_RS24595 (55019) | 55019..57895 | + | 2877 | WP_279283693.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| NFK54_RS24600 (57910) | 57910..58821 | + | 912 | WP_001558283.1 | hypothetical protein | - |
| NFK54_RS24605 (58893) | 58893..59630 | + | 738 | WP_000926075.1 | conjugal transfer complement resistance protein TraT | - |
| NFK54_RS24610 (59758) | 59758..60450 | + | 693 | WP_000235175.1 | hypothetical protein | - |
| NFK54_RS24615 (60592) | 60592..60960 | + | 369 | WP_237708211.1 | DUF2726 domain-containing protein | - |
| NFK54_RS24620 (61001) | 61001..63187 | + | 2187 | WP_000099426.1 | type IV conjugative transfer system coupling protein TraD | - |
| NFK54_RS24625 (63187) | 63187..68403 | + | 5217 | WP_279283694.1 | Multifunctional conjugation protein TraI | Relaxase |
| NFK54_RS24630 (68403) | 68403..68624 | + | 222 | WP_000412081.1 | hypothetical protein | - |
| NFK54_RS24635 (68632) | 68632..69381 | + | 750 | WP_279283695.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| NFK54_RS24640 (69455) | 69455..70015 | + | 561 | WP_000139377.1 | fertility inhibition protein FinO | - |
| NFK54_RS24645 (70148) | 70148..70348 | + | 201 | WP_001558275.1 | hypothetical protein | - |
| NFK54_RS24650 (70736) | 70736..71335 | + | 600 | WP_024195840.1 | PIN domain-containing protein | - |
| NFK54_RS24655 (72042) | 72042..72302 | + | 261 | WP_000083819.1 | replication regulatory protein RepA | - |
| NFK54_RS24660 (72333) | 72333..72447 | - | 115 | Protein_89 | replication protein RepA | - |
| NFK54_RS24665 (72397) | 72397..72583 | + | 187 | Protein_90 | plasmid copy control protein CopA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|