MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 98156 bp
Accession: NZ_CP099345 Location: 1..98156 Organism: Escherichia marmotae strain RHB35-E2-C08 Replicon: plasmid unnamed1
Accession: NZ_CP099345 Location: 1..98156 Organism: Escherichia marmotae strain RHB35-E2-C08 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFK54_RS23640 (1) | 1..858 | + | 858 | WP_181503376.1 | incFII family plasmid replication initiator RepA | - |
| NFK54_RS23645 (1829) | 1829..2140 | + | 312 | WP_279283674.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| NFK54_RS23650 (2140) | 2140..2427 | + | 288 | WP_024195838.1 | helix-turn-helix transcriptional regulator | - |
| NFK54_RS23655 (2426) | 2426..2539 | - | 114 | Protein_3 | IS91 family transposase | - |
| NFK54_RS23660 (2697) | 2697..4310 | - | 1614 | WP_279283675.1 | IS66 family transposase ISEc43 | Transposase |
| NFK54_RS23665 (4411) | 4411..7395 | - | 2985 | WP_273785354.1 | Tn3 family transposase TnpA_ISSba14 | Transposase |
| NFK54_RS23670 (7556) | 7556..8146 | + | 591 | WP_279283676.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| NFK54_RS23675 (8194) | 8194..8511 | - | 318 | Protein_7 | IS66 family transposase IS682 | Transposase |
| NFK54_RS23680 (8508) | 8508..8933 | - | 426 | WP_279283677.1 | IS66 family transposase IS682 | Transposase |
| NFK54_RS23685 (9019) | 9019..9144 | - | 126 | Protein_9 | transposase DNA-binding-containing protein | - |
| NFK54_RS23690 (10254) | 10254..10949 | - | 696 | WP_279283678.1 | hypothetical protein | VF |
| NFK54_RS23695 (11407) | 11407..11616 | - | 210 | WP_181479334.1 | hypothetical protein | - |
| NFK54_RS23700 (11629) | 11629..12555 | - | 927 | WP_279283679.1 | hypothetical protein | - |
| NFK54_RS23705 (12632) | 12632..12922 | - | 291 | WP_279283680.1 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| NFK54_RS23710 (12954) | 12954..13595 | - | 642 | WP_279283681.1 | DsbA family protein | - |
| NFK54_RS23715 (13633) | 13633..13758 | - | 126 | WP_279283682.1 | hypothetical protein | - |
| NFK54_RS23720 (13804) | 13804..14325 | - | 522 | WP_279283683.1 | F18 fimbrial protein FedE | - |
| NFK54_RS23725 (14312) | 14312..15004 | - | 693 | WP_279283684.1 | Chaperone protein FaeE | VF |
| NFK54_RS23730 (14997) | 14997..17408 | - | 2412 | WP_279283685.1 | putative outer membrane usher protein ElfC | VF |
| NFK54_RS23735 (17509) | 17509..18042 | - | 534 | WP_279283686.1 | hypothetical protein | VF |
| NFK54_RS23740 (18421) | 18421..18768 | - | 348 | WP_279283687.1 | Major pilu subunit operon regulatory protein PapB | VF |
| NFK54_RS23745 (19461) | 19461..19778 | - | 318 | WP_244977807.1 | PerC family transcriptional regulator | - |
| NFK54_RS23750 (20251) | 20251..22902 | + | 2652 | WP_279283692.1 | hypothetical protein | VF |
| NFK54_RS23755 (23283) | 23283..23936 | + | 654 | WP_279283688.1 | hypothetical protein | - |
| NFK54_RS23760 (24110) | 24110..26167 | - | 2058 | WP_001559890.1 | prolyl oligopeptidase family serine peptidase | - |
| NFK54_RS23765 (27332) | 27332..27556 | + | 225 | WP_237712275.1 | hypothetical protein | - |
| NFK54_RS23770 (27702) | 27702..28715 | - | 1014 | WP_024194532.1 | sulfite reductase subunit C | - |
| NFK54_RS23775 (28726) | 28726..29544 | - | 819 | WP_001542543.1 | anaerobic sulfite reductase subunit AsrB | - |
| NFK54_RS23780 (29548) | 29548..30591 | - | 1044 | WP_181479329.1 | anaerobic sulfite reductase subunit AsrA | - |
| NFK54_RS23785 (31019) | 31019..31657 | + | 639 | WP_071601926.1 | uracil-DNA glycosylase | - |
| NFK54_RS23790 (31854) | 31854..32276 | - | 423 | WP_181479328.1 | universal stress protein | - |
| NFK54_RS23795 (32973) | 32973..34010 | - | 1038 | WP_279283689.1 | nucleotidyltransferase | - |
| NFK54_RS23800 (34691) | 34691..35005 | + | 315 | WP_001302628.1 | hypothetical protein | - |
| NFK54_RS23805 (35067) | 35067..35837 | + | 771 | WP_001499400.1 | hypothetical protein | - |
| NFK54_RS23810 (35882) | 35882..36667 | + | 786 | WP_077248910.1 | site-specific integrase | - |
| NFK54_RS23815 (36805) | 36805..37080 | - | 276 | WP_000239529.1 | hypothetical protein | - |
| NFK54_RS23820 (37074) | 37074..37718 | - | 645 | WP_000633913.1 | division plane positioning ATPase MipZ | - |
| NFK54_RS23825 (37947) | 37947..38918 | + | 972 | WP_001103690.1 | plasmid segregation protein ParM | - |
| NFK54_RS23830 (38923) | 38923..39315 | + | 393 | WP_000340829.1 | plasmid partitioning/stability family protein | - |
| NFK54_RS23835 (39320) | 39320..40591 | - | 1272 | WP_279283690.1 | Y-family DNA polymerase | - |
| NFK54_RS23840 (40591) | 40591..41028 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| NFK54_RS23845 (41025) | 41025..41273 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| NFK54_RS23850 (41691) | 41691..42593 | + | 903 | WP_001302618.1 | DUF1281 domain-containing protein | - |
| NFK54_RS23855 (42590) | 42590..42901 | + | 312 | WP_181503390.1 | hypothetical protein | - |
| NFK54_RS23860 (42978) | 42978..43661 | + | 684 | WP_000085890.1 | DNA methylase | - |
| NFK54_RS23865 (43662) | 43662..43883 | + | 222 | WP_001558391.1 | hypothetical protein | - |
| NFK54_RS23870 (43864) | 43864..44330 | + | 467 | Protein_46 | DUF1380 family protein | - |
| NFK54_RS23875 (44376) | 44376..45152 | + | 777 | WP_001558394.1 | hypothetical protein | - |
| NFK54_RS23880 (45565) | 45565..45990 | + | 426 | WP_105632989.1 | antirestriction protein | - |
| NFK54_RS23885 (46037) | 46037..46456 | + | 420 | WP_192958210.1 | DUF1380 family protein | - |
| NFK54_RS23890 (46467) | 46467..46940 | - | 474 | Protein_50 | hypothetical protein | - |
| NFK54_RS23895 (47453) | 47453..47683 | + | 231 | WP_105288677.1 | hypothetical protein | - |
| NFK54_RS23900 (47735) | 47735..49096 | + | 1362 | WP_279283691.1 | DUF3560 domain-containing protein | - |
| NFK54_RS23905 (49143) | 49143..49706 | + | 564 | WP_021548773.1 | class I SAM-dependent methyltransferase | - |
| NFK54_RS23910 (49795) | 49795..50235 | - | 441 | Protein_54 | hypothetical protein | - |
| NFK54_RS23915 (50305) | 50305..50511 | + | 207 | WP_069894508.1 | single-stranded DNA-binding protein | - |
| NFK54_RS23920 (50537) | 50537..50992 | + | 456 | WP_112021089.1 | single-stranded DNA-binding protein | - |
| NFK54_RS23925 (51049) | 51049..51282 | + | 234 | WP_001470808.1 | DUF905 domain-containing protein | - |
| NFK54_RS23930 (51346) | 51346..53310 | + | 1965 | WP_279283662.1 | ParB/RepB/Spo0J family partition protein | - |
| NFK54_RS23935 (53379) | 53379..53813 | + | 435 | WP_279283663.1 | conjugation system SOS inhibitor PsiB | - |
| NFK54_RS23940 (53810) | 53810..54596 | + | 787 | Protein_60 | plasmid SOS inhibition protein A | - |
| - (54541) | 54541..54738 | + | 198 | NuclAT_0 | - | Antitoxin Detail |
| - (54541) | 54541..54738 | + | 198 | NuclAT_0 | - | Antitoxin Detail |
| - (54541) | 54541..54738 | + | 198 | NuclAT_0 | - | Antitoxin Detail |
| - (54541) | 54541..54738 | + | 198 | NuclAT_0 | - | Antitoxin Detail |
| NFK54_RS23945 (54746) | 54746..54898 | + | 153 | Protein_61 | DUF5431 family protein | - |
| NFK54_RS23950 (54843) | 54843..54965 | + | 123 | WP_223163518.1 | Hok/Gef family protein | Toxin Detail |
| NFK54_RS23955 (55266) | 55266..55562 | - | 297 | Protein_63 | hypothetical protein | - |
| NFK54_RS23960 (55632) | 55632..55838 | + | 207 | WP_245146926.1 | single-stranded DNA-binding protein | - |
| NFK54_RS23965 (55862) | 55862..56158 | + | 297 | WP_105282070.1 | hypothetical protein | - |
| NFK54_RS23970 (56317) | 56317..56559 | + | 243 | WP_000540591.1 | hypothetical protein | - |
| NFK54_RS23975 (56556) | 56556..56675 | + | 120 | Protein_67 | class I SAM-dependent methyltransferase | - |
| NFK54_RS23980 (56764) | 56764..57180 | - | 417 | Protein_68 | hypothetical protein | - |
| NFK54_RS23985 (57250) | 57250..57456 | + | 207 | WP_279283664.1 | single-stranded DNA-binding protein | - |
| NFK54_RS23990 (57479) | 57479..57775 | + | 297 | WP_001272240.1 | hypothetical protein | - |
| NFK54_RS23995 (57882) | 57882..58703 | + | 822 | WP_001234451.1 | DUF932 domain-containing protein | - |
| NFK54_RS24000 (58982) | 58982..59434 | - | 453 | WP_024212709.1 | hypothetical protein | VF |
| NFK54_RS24005 (59947) | 59947..60342 | + | 396 | WP_001137965.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| NFK54_RS24010 (60504) | 60504..61232 | + | 729 | WP_135403573.1 | hypothetical protein | - |
| NFK54_RS24015 (61317) | 61317..61523 | + | 207 | WP_135403572.1 | TraY domain-containing protein | - |
| NFK54_RS24020 (61825) | 61825..62208 | + | 384 | WP_279283665.1 | type IV conjugative transfer system pilin TraA | - |
| NFK54_RS24025 (62239) | 62239..62538 | + | 300 | WP_001204091.1 | type IV conjugative transfer system protein TraL | - |
| NFK54_RS24030 (62549) | 62549..63127 | + | 579 | WP_000365869.1 | type IV conjugative transfer system protein TraE | - |
| NFK54_RS24035 (63102) | 63102..63881 | + | 780 | WP_279283666.1 | type-F conjugative transfer system secretin TraK | - |
| NFK54_RS24040 (63874) | 63874..65208 | + | 1335 | WP_053272771.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| NFK54_RS24045 (65220) | 65220..65732 | + | 513 | WP_001558300.1 | type IV conjugative transfer system lipoprotein TraV | - |
| NFK54_RS24050 (65729) | 65729..68368 | + | 2640 | WP_279283667.1 | type IV secretion system protein TraC | - |
| NFK54_RS24055 (68347) | 68347..68763 | + | 417 | WP_279283668.1 | type-F conjugative transfer system protein TrbI | - |
| NFK54_RS24060 (68766) | 68766..68990 | + | 225 | WP_000752802.1 | TraR/DksA C4-type zinc finger protein | - |
| NFK54_RS24065 (68987) | 68987..69604 | + | 618 | WP_167780306.1 | type-F conjugative transfer system protein TraW | - |
| NFK54_RS24070 (69601) | 69601..69996 | + | 396 | WP_151567967.1 | hypothetical protein | - |
| NFK54_RS24075 (69993) | 69993..70991 | + | 999 | WP_001558295.1 | conjugal transfer pilus assembly protein TraU | - |
| NFK54_RS24080 (71000) | 71000..71485 | + | 486 | WP_000216829.1 | hypothetical protein | - |
| NFK54_RS24085 (71667) | 71667..71915 | + | 249 | Protein_89 | conjugal transfer protein TraP | - |
| NFK54_RS24090 (71902) | 71902..72219 | + | 318 | Protein_90 | conjugal transfer protein TrbD | - |
| NFK54_RS24095 (72387) | 72387..72992 | + | 606 | WP_250130495.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| NFK54_RS24100 (72989) | 72989..74923 | + | 1935 | WP_279283669.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| NFK54_RS24105 (74925) | 74925..75710 | + | 786 | WP_001247978.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| NFK54_RS24110 (75728) | 75728..76000 | + | 273 | WP_001558287.1 | hypothetical protein | - |
| NFK54_RS24115 (76002) | 76002..76577 | + | 576 | WP_000265824.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| NFK54_RS24120 (76574) | 76574..76963 | + | 390 | WP_001202475.1 | hypothetical protein | - |
| NFK54_RS24125 (77029) | 77029..78435 | + | 1407 | WP_001558285.1 | conjugal transfer pilus assembly protein TraH | - |
| NFK54_RS24130 (78435) | 78435..81344 | + | 2910 | WP_279283670.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| NFK54_RS24135 (81359) | 81359..82006 | + | 648 | WP_097456829.1 | hypothetical protein | - |
| NFK54_RS24140 (82078) | 82078..82815 | + | 738 | WP_000926075.1 | conjugal transfer complement resistance protein TraT | - |
| NFK54_RS24145 (82943) | 82943..83506 | + | 564 | WP_279283671.1 | hypothetical protein | - |
| NFK54_RS24150 (83778) | 83778..84146 | + | 369 | WP_245146932.1 | DUF2726 domain-containing protein | - |
| NFK54_RS24155 (84163) | 84163..84561 | - | 399 | WP_000911306.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| NFK54_RS24160 (84561) | 84561..84788 | - | 228 | WP_000450523.1 | toxin-antitoxin system antitoxin VapB | - |
| NFK54_RS24165 (84921) | 84921..87107 | + | 2187 | WP_000099426.1 | type IV conjugative transfer system coupling protein TraD | - |
| NFK54_RS24170 (87107) | 87107..92323 | + | 5217 | WP_279283672.1 | Multifunctional conjugation protein TraI | Relaxase |
| NFK54_RS24175 (92323) | 92323..93081 | + | 759 | WP_279283673.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| NFK54_RS24180 (93155) | 93155..93715 | + | 561 | WP_000139377.1 | fertility inhibition protein FinO | - |
| NFK54_RS24185 (93848) | 93848..94048 | + | 201 | WP_001558275.1 | hypothetical protein | - |
| NFK54_RS24190 (94436) | 94436..95035 | + | 600 | WP_273780567.1 | PIN domain-containing protein | - |
| - (95978) | 95978..96036 | - | 59 | NuclAT_1 | - | - |
| - (95978) | 95978..96036 | - | 59 | NuclAT_1 | - | - |
| - (95978) | 95978..96036 | - | 59 | NuclAT_1 | - | - |
| - (95978) | 95978..96036 | - | 59 | NuclAT_1 | - | - |
| NFK54_RS24195 (96083) | 96083..96232 | + | 150 | WP_001312851.1 | Hok/Gef family protein | - |
| NFK54_RS24200 (96547) | 96547..96837 | + | 291 | WP_001558271.1 | DUF1778 domain-containing protein | - |
| NFK54_RS24205 (96828) | 96828..97310 | + | 483 | WP_001558270.1 | GNAT family N-acetyltransferase | - |
| NFK54_RS24210 (97595) | 97595..97855 | + | 261 | WP_000078108.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|