MGE detailed information
MGE type: Genomic_island MGE length: 10427 bp
Accession: NZ_CP098834 Location: 1027919..1038345 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain GD19PS1 Replicon: chromosome
Accession: NZ_CP098834 Location: 1027919..1038345 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain GD19PS1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NFH28_RS04920 (1023032) | 1023032..1023412 | + | 381 | WP_001070479.1 | DUF4440 domain-containing protein | - |
| NFH28_RS04925 (1023468) | 1023468..1026035 | - | 2568 | WP_001005807.1 | DNA mismatch repair protein MutS | - |
| NFH28_RS04930 (1026194) | 1026194..1026715 | + | 522 | WP_000858988.1 | hypothetical protein | - |
| NFH28_RS04935 (1026887) | 1026887..1027543 | - | 657 | WP_000420452.1 | protein-serine/threonine phosphatase | - |
| NFH28_RS04940 (1027890) | 1027890..1028095 | + | 206 | Protein_972 | IS5 family transposase ISEcl3 | Transposase |
| NFH28_RS04945 (1028168) | 1028168..1028695 | - | 528 | WP_000971655.1 | GNAT family N-acetyltransferase | Toxin Detail |
| NFH28_RS04950 (1028692) | 1028692..1028982 | - | 291 | WP_000855692.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| NFH28_RS04955 (1029252) | 1029252..1029430 | - | 179 | Protein_975 | IS3 family transposase | - |
| NFH28_RS04960 (1029671) | 1029671..1029997 | + | 327 | WP_000393302.1 | hypothetical protein | - |
| NFH28_RS04965 (1030270) | 1030270..1030617 | - | 348 | WP_001669174.1 | DUF1493 family protein | - |
| NFH28_RS04970 (1030602) | 1030602..1031051 | - | 450 | WP_000381610.1 | membrane protein | - |
| NFH28_RS04975 (1031482) | 1031482..1031925 | - | 444 | WP_000715092.1 | Type 3 secretion system pilotin | VF |
| NFH28_RS04980 (1032382) | 1032382..1033032 | + | 651 | WP_001674874.1 | Invasion protein InvF | VF |
| NFH28_RS04985 (1033029) | 1033029..1034717 | + | 1689 | WP_000848113.1 | Type 3 secretion system secretin | VF |
| NFH28_RS04990 (1034714) | 1034714..1035832 | + | 1119 | WP_000612171.1 | Protein MxiC | VF |
| NFH28_RS04995 (1035857) | 1035857..1037914 | + | 2058 | WP_252321608.1 | Invasion protein InvA | VF |
| NFH28_RS05000 (1037938) | 1037938..1038345 | + | 408 | WP_001164066.1 | Surface presentation of antigens protein SpaK | VF |
| NFH28_RS05005 (1038342) | 1038342..1039637 | + | 1296 | WP_000856766.1 | SctN family type III secretion system ATPase InvC | - |
| NFH28_RS05010 (1039615) | 1039615..1040058 | + | 444 | WP_001520714.1 | SPI-1 type III secretion system protein SpaM | - |
| NFH28_RS05015 (1040058) | 1040058..1041068 | + | 1011 | WP_000503098.1 | SPI-1 type III secretion system protein SpaN | - |
| NFH28_RS05020 (1041068) | 1041068..1041979 | + | 912 | WP_000058734.1 | SPI-1 type III secretion system protein SpaO | - |
| NFH28_RS05025 (1041969) | 1041969..1042643 | + | 675 | WP_000526016.1 | SPI-1 type III secretion system export apparatus protein SpaP | - |
| NFH28_RS05030 (1042669) | 1042669..1042929 | + | 261 | WP_000342503.1 | SPI-1 type III secretion system export apparatus protein SpaQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA10052 | UFRD01000002 | 4599654..4610080 | 0 |