MGE detailed information
MGE type: Prophage MGE length: 17721 bp
Accession: NZ_CP098710 Location: 457945..475665 Organism: Yersinia ruckeri strain NVI-4479 Replicon: chromosome
Accession: NZ_CP098710 Location: 457945..475665 Organism: Yersinia ruckeri strain NVI-4479 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ND012_RS02080 (ND012_02080) | 453032..453481 | - | 450 | WP_004720451.1 | DNA polymerase III subunit chi | - |
| ND012_RS02085 (ND012_02085) | 453604..455115 | - | 1512 | WP_004720452.1 | leucyl aminopeptidase | - |
| ND012_RS02090 (ND012_02090) | 455395..456489 | + | 1095 | WP_004720454.1 | LPS export ABC transporter permease LptF | - |
| ND012_RS02095 (ND012_02095) | 456489..457559 | + | 1071 | WP_038241732.1 | LPS export ABC transporter permease LptG | - |
| ND012_RS02105 (ND012_02105) | 457945..459201 | + | 1257 | Protein_407 | Prophage integrase IntA ; Integrase | Integrase |
| ND012_RS02110 (ND012_02110) | 459535..463059 | + | 3525 | WP_248578730.1 | type I restriction-modification system endonuclease | - |
| ND012_RS02115 (ND012_02115) | 463139..464758 | + | 1620 | WP_248578731.1 | N-6 DNA methylase | - |
| ND012_RS02120 (ND012_02120) | 464758..466107 | + | 1350 | WP_248578732.1 | restriction endonuclease subunit S | - |
| ND012_RS02125 (ND012_02125) | 466107..466640 | + | 534 | WP_267262542.1 | hypothetical protein | - |
| ND012_RS02130 (ND012_02130) | 466674..467761 | + | 1088 | WP_099511755.1 | IS3 family transposase ISKpn20 | Transposase |
| ND012_RS02135 (ND012_02135) | 468166..469110 | - | 945 | WP_248578899.1 | hypothetical protein | - |
| ND012_RS02140 (ND012_02140) | 469624..470883 | + | 1260 | Protein_414 | integrase arm-type DNA-binding domain-containing protein | - |
| ND012_RS02145 (ND012_02145) | 471057..471311 | + | 255 | WP_005175264.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| ND012_RS02150 (ND012_02150) | 471301..471591 | + | 291 | WP_038275268.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| ND012_RS02155 (ND012_02155) | 471855..472244 | + | 390 | WP_234049240.1 | restriction endonuclease subunit S | - |
| ND012_RS02160 (ND012_02160) | 472368..472943 | + | 576 | WP_234049239.1 | DarT ssDNA thymidine ADP-ribosyltransferase family protein | - |
| ND012_RS02165 (ND012_02165) | 472946..473602 | + | 657 | WP_096823271.1 | DUF4433 domain-containing protein | Toxin Detail |
| ND012_RS02170 (ND012_02170) | 473599..474666 | + | 1068 | WP_096823272.1 | macro domain-containing protein | Antitoxin Detail |
| ND012_RS02175 (ND012_02175) | 474687..474953 | + | 267 | Protein_421 | hypothetical protein | - |
| ND012_RS02180 (ND012_02180) | 474972..475370 | - | 399 | Protein_422 | integrase core domain-containing protein | - |
| ND012_RS02185 (ND012_02185) | 475369..475665 | + | 297 | Protein_423 | IS3 family transposase IS1400 | Transposase |
| ND012_RS02190 (ND012_02190) | 475694..475814 | - | 121 | Protein_424 | transposase | - |
| ND012_RS02195 (ND012_02195) | 475807..475935 | - | 129 | Protein_425 | helix-turn-helix domain-containing protein | - |
| ND012_RS02200 (ND012_02200) | 476085..476315 | + | 231 | Protein_426 | DUF4942 domain-containing protein | - |
| ND012_RS02205 (ND012_02205) | 476390..476785 | + | 396 | WP_038245317.1 | DUF6088 family protein | - |
| ND012_RS02210 (ND012_02210) | 476778..477728 | + | 951 | WP_038275283.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | - |
| ND012_RS02215 (ND012_02215) | 478096..478221 | + | 126 | Protein_429 | antirestriction protein | - |
| ND012_RS02220 (ND012_02220) | 478247..478489 | + | 243 | Protein_430 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| ND012_RS02225 (ND012_02225) | 479024..480178 | + | 1155 | WP_038245380.1 | N-acetylneuraminate epimerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|