MGE detailed information
MGE type: Genomic_island MGE length: 10427 bp
Accession: NZ_CP098438 Location: 1038396..1048822 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain ATOMSal-L6 Replicon: chromosome
Accession: NZ_CP098438 Location: 1038396..1048822 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain ATOMSal-L6 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M9193_RS04930 (1033509) | 1033509..1033889 | + | 381 | WP_001070479.1 | DUF4440 domain-containing protein | - |
| M9193_RS04935 (1033945) | 1033945..1036512 | - | 2568 | WP_088365275.1 | DNA mismatch repair protein MutS | - |
| M9193_RS04940 (1036671) | 1036671..1037192 | + | 522 | WP_000858988.1 | hypothetical protein | - |
| M9193_RS04945 (1037364) | 1037364..1038020 | - | 657 | WP_000420452.1 | protein-serine/threonine phosphatase | - |
| M9193_RS04950 (1038367) | 1038367..1038572 | + | 206 | Protein_973 | IS5 family transposase ISEcl3 | Transposase |
| M9193_RS04955 (1038645) | 1038645..1039172 | - | 528 | WP_000971655.1 | GNAT family N-acetyltransferase | Toxin Detail |
| M9193_RS04960 (1039169) | 1039169..1039459 | - | 291 | WP_000855692.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| M9193_RS04965 (1039729) | 1039729..1039907 | - | 179 | Protein_976 | IS3 family transposase | - |
| M9193_RS04970 (1040148) | 1040148..1040474 | + | 327 | WP_000393302.1 | hypothetical protein | - |
| M9193_RS04975 (1040747) | 1040747..1041094 | - | 348 | WP_001669174.1 | DUF1493 family protein | - |
| M9193_RS04980 (1041079) | 1041079..1041528 | - | 450 | WP_000381610.1 | membrane protein | - |
| M9193_RS04985 (1041959) | 1041959..1042402 | - | 444 | WP_000715092.1 | Type 3 secretion system pilotin | VF |
| M9193_RS04990 (1042859) | 1042859..1043509 | + | 651 | WP_001674874.1 | Invasion protein InvF | VF |
| M9193_RS04995 (1043506) | 1043506..1045194 | + | 1689 | WP_000848113.1 | Type 3 secretion system secretin | VF |
| M9193_RS05000 (1045191) | 1045191..1046309 | + | 1119 | WP_000612171.1 | Protein MxiC | VF |
| M9193_RS05005 (1046334) | 1046334..1048391 | + | 2058 | WP_000927219.1 | Invasion protein InvA | VF |
| M9193_RS05010 (1048415) | 1048415..1048822 | + | 408 | WP_001164066.1 | Surface presentation of antigens protein SpaK | VF |
| M9193_RS05015 (1048819) | 1048819..1050114 | + | 1296 | WP_000856766.1 | SctN family type III secretion system ATPase InvC | - |
| M9193_RS05020 (1050092) | 1050092..1050535 | + | 444 | WP_001520714.1 | SPI-1 type III secretion system protein SpaM | - |
| M9193_RS05025 (1050535) | 1050535..1051545 | + | 1011 | WP_000503098.1 | SPI-1 type III secretion system protein SpaN | - |
| M9193_RS05030 (1051545) | 1051545..1052456 | + | 912 | WP_000058734.1 | SPI-1 type III secretion system protein SpaO | - |
| M9193_RS05035 (1052446) | 1052446..1053120 | + | 675 | WP_000526016.1 | SPI-1 type III secretion system export apparatus protein SpaP | - |
| M9193_RS05040 (1053146) | 1053146..1053406 | + | 261 | WP_000342503.1 | SPI-1 type III secretion system export apparatus protein SpaQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Genomic island | TA10052 | UFRD01000002 | 4599654..4610080 | 0 |