MGE detailed information
MGE type: Conjugative plasmid MGE length: 103564 bp
Accession: NZ_CP098220 Location: 1..103564 Organism: Escherichia coli strain Z0117EC0013 Replicon: plasmid pZ0117EC0013-1
Accession: NZ_CP098220 Location: 1..103564 Organism: Escherichia coli strain Z0117EC0013 Replicon: plasmid pZ0117EC0013-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY13_RS23705 (552) | 552..740 | + | 189 | Protein_1 | restriction endonuclease subunit S | - |
| NBY13_RS23710 (794) | 794..1491 | + | 698 | WP_103215986.1 | IS1 family transposase IS1G | Transposase |
| NBY13_RS23715 (1628) | 1628..2521 | - | 894 | WP_001553853.1 | S-4TM family putative pore-forming effector | - |
| NBY13_RS23720 (2564) | 2564..3559 | - | 996 | WP_000246636.1 | hypothetical protein | - |
| NBY13_RS23725 (4267) | 4267..4485 | + | 219 | WP_000813634.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| NBY13_RS23730 (4487) | 4487..4792 | + | 306 | WP_001159868.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| NBY13_RS23735 (4793) | 4793..5575 | + | 783 | WP_072644413.1 | site-specific integrase | - |
| NBY13_RS23740 (6349) | 6349..7104 | + | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| NBY13_RS23745 (7692) | 7692..8858 | + | 1167 | WP_000772446.1 | hypothetical protein | VF |
| NBY13_RS23750 (8858) | 8858..9829 | + | 972 | WP_000817036.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| NBY13_RS23755 (10696) | 10696..11598 | + | 903 | WP_001348615.1 | DUF1281 domain-containing protein | - |
| NBY13_RS23760 (11595) | 11595..11906 | + | 312 | WP_032143366.1 | hypothetical protein | - |
| NBY13_RS23765 (11983) | 11983..12666 | + | 684 | WP_000086185.1 | DNA methylase | - |
| NBY13_RS23770 (12667) | 12667..12888 | + | 222 | WP_001104873.1 | hypothetical protein | - |
| NBY13_RS23775 (12818) | 12818..13336 | + | 519 | WP_123325260.1 | DUF1380 family protein | - |
| NBY13_RS23780 (13387) | 13387..14163 | + | 777 | WP_001753849.1 | hypothetical protein | - |
| NBY13_RS23785 (14580) | 14580..15005 | + | 426 | WP_001198928.1 | antirestriction protein | - |
| NBY13_RS23790 (15052) | 15052..15474 | + | 423 | WP_000271753.1 | DUF1380 family protein | - |
| NBY13_RS23795 (15471) | 15471..15662 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| NBY13_RS23800 (16697) | 16697..16927 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| NBY13_RS23805 (16979) | 16979..18100 | + | 1122 | WP_250838136.1 | DUF3560 domain-containing protein | - |
| NBY13_RS23810 (18147) | 18147..18851 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| NBY13_RS23815 (18904) | 18904..19818 | + | 915 | Protein_23 | conjugal transfer protein TraG | - |
| NBY13_RS23820 (19837) | 19837..20334 | + | 498 | WP_000605862.1 | entry exclusion protein | - |
| NBY13_RS23825 (20366) | 20366..21097 | + | 732 | WP_000850429.1 | conjugal transfer complement resistance protein TraT | - |
| NBY13_RS23830 (21300) | 21300..22079 | + | 780 | WP_000199914.1 | hypothetical protein | - |
| NBY13_RS23835 (22076) | 22076..24274 | + | 2199 | WP_024623315.1 | type IV conjugative transfer system coupling protein TraD | - |
| NBY13_RS23840 (24274) | 24274..24459 | + | 186 | WP_250838137.1 | Multifunctional conjugation protein TraI | Relaxase |
| NBY13_RS23845 (24496) | 24496..25200 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| NBY13_RS23850 (25250) | 25250..25468 | - | 219 | Protein_30 | IS4 family transposase | - |
| NBY13_RS23860 (26380) | 26380..26493 | + | 114 | Protein_32 | IS6 family transposase IS15DI | Transposase |
| NBY13_RS23865 (26631) | 26631..26801 | + | 171 | Protein_33 | DsbA family protein | - |
| NBY13_RS23870 (26791) | 26791..27297 | + | 507 | WP_000949452.1 | protein disulfide oxidoreductase | - |
| NBY13_RS23875 (27534) | 27534..28295 | + | 762 | WP_001225378.1 | Na(+)-translocating NADH-quinone reductase subunit C | - |
| NBY13_RS23880 (28642) | 28642..30528 | + | 1887 | WP_000118029.1 | FTR1 family protein | - |
| NBY13_RS23885 (30569) | 30569..31096 | + | 528 | WP_000178050.1 | iron transporter | - |
| NBY13_RS23890 (31200) | 31200..32579 | + | 1380 | WP_000119836.1 | Fe-S-containing protein | - |
| NBY13_RS23895 (32582) | 32582..33865 | + | 1284 | WP_000964653.1 | ABC transporter permease | - |
| NBY13_RS23900 (33855) | 33855..34985 | + | 1131 | WP_000729218.1 | ABC transporter permease | - |
| NBY13_RS23905 (34990) | 34990..35685 | + | 696 | WP_000117262.1 | Lipoprotein-releasing system ATP-binding protein LolD | VF |
| NBY13_RS23910 (35672) | 35672..36157 | + | 486 | WP_001267176.1 | TlpA disulfide reductase family protein | - |
| NBY13_RS23915 (36182) | 36182..36667 | + | 486 | WP_000874189.1 | hypothetical protein | - |
| NBY13_RS23920 (36789) | 36789..37422 | + | 634 | Protein_44 | histidine-type phosphatase | - |
| NBY13_RS23925 (37572) | 37572..37745 | - | 174 | Protein_45 | IS5 family transposase ISKpn26 | Transposase |
| NBY13_RS23930 (37746) | 37746..38060 | - | 315 | Protein_46 | IS5 family transposase ISKpn26 | Transposase |
| NBY13_RS23935 (38733) | 38733..39472 | - | 740 | Protein_47 | IS3 family transposase IS629 | Transposase |
| NBY13_RS23940 (39574) | 39574..39834 | + | 261 | WP_000371882.1 | hypothetical protein | - |
| NBY13_RS23945 (39831) | 39831..40340 | + | 510 | WP_000194542.1 | hypothetical protein | - |
| NBY13_RS23950 (40360) | 40360..40707 | - | 348 | WP_000142452.1 | DUF6404 family protein | - |
| NBY13_RS23955 (40836) | 40836..41171 | + | 336 | WP_001080732.1 | colicin E1 family microcin immunity protein | - |
| NBY13_RS23965 (43400) | 43400..44025 | + | 626 | Protein_53 | replication initiation protein | - |
| NBY13_RS23970 (44399) | 44399..45274 | + | 876 | WP_001224623.1 | ChaN family lipoprotein | - |
| NBY13_RS23975 (45282) | 45282..46058 | + | 777 | WP_000981091.1 | energy transducer TonB | - |
| NBY13_RS23980 (46227) | 46227..48488 | + | 2262 | WP_001100763.1 | TonB-dependent receptor | - |
| NBY13_RS23985 (48557) | 48557..49732 | + | 1176 | WP_001020413.1 | putative protein YncE | VF |
| NBY13_RS23990 (50255) | 50255..50560 | - | 306 | Protein_58 | IS91 family transposase ISSbo1 | Transposase |
| NBY13_RS23995 (50586) | 50586..51325 | + | 740 | Protein_59 | IS3 family transposase IS629 | Transposase |
| NBY13_RS24000 (51998) | 51998..53506 | + | 1509 | WP_001189113.1 | group II intron reverse transcriptase/maturase | - |
| NBY13_RS24005 (53590) | 53590..53928 | + | 339 | Protein_61 | IS3 family transposase IS629 | Transposase |
| NBY13_RS24010 (54008) | 54008..54412 | + | 405 | WP_000839179.1 | IS66 family transposase ISEc22 | Transposase |
| NBY13_RS24015 (54409) | 54409..54756 | + | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| NBY13_RS24020 (54805) | 54805..55750 | + | 946 | Protein_64 | IS66 family transposase ISEc8 | Transposase |
| NBY13_RS24025 (55836) | 55836..56858 | + | 1023 | WP_001310017.1 | IS21 family transposase IS100kyp | Transposase |
| NBY13_RS24030 (56855) | 56855..57637 | + | 783 | WP_001300609.1 | IS21 family transposase IS100kyp | Transposase |
| NBY13_RS24035 (57705) | 57705..58313 | + | 609 | Protein_67 | IS66 family transposase ISEc22 | Transposase |
| NBY13_RS24040 (58376) | 58376..59167 | - | 792 | WP_000977394.1 | DUF4198 domain-containing protein | - |
| NBY13_RS24045 (59174) | 59174..61144 | - | 1971 | WP_001298664.1 | Hemin receptor | VF |
| NBY13_RS24050 (61426) | 61426..61850 | + | 425 | Protein_70 | IS3 family transposase IS2 | Transposase |
| NBY13_RS24055 (62387) | 62387..62659 | + | 273 | WP_001322642.1 | adhesin biosynthesis transcription regulatory family protein | - |
| NBY13_RS24060 (63105) | 63105..63280 | + | 176 | Protein_72 | IS3 family transposase | - |
| NBY13_RS24065 (63506) | 63506..64675 | - | 1170 | WP_001072358.1 | hypothetical protein | - |
| NBY13_RS24070 (65042) | 65042..65230 | + | 189 | WP_001309252.1 | hypothetical protein | - |
| NBY13_RS24075 (65351) | 65351..66090 | + | 740 | Protein_75 | tyrosine-type recombinase/integrase | - |
| NBY13_RS24080 (66355) | 66355..67366 | - | 1012 | Protein_76 | RepB family plasmid replication initiator protein | - |
| NBY13_RS24085 (68036) | 68036..68740 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| NBY13_RS24090 (68793) | 68793..70288 | + | 1496 | Protein_78 | IS66 family transposase ISEc23 | Transposase |
| NBY13_RS24095 (70366) | 70366..70643 | + | 278 | Protein_79 | DUF2726 domain-containing protein | - |
| - (70619) | 70619..70678 | - | 60 | NuclAT_2 | - | Antitoxin Detail |
| - (70619) | 70619..70678 | - | 60 | NuclAT_2 | - | Antitoxin Detail |
| - (70619) | 70619..70678 | - | 60 | NuclAT_2 | - | Antitoxin Detail |
| - (70619) | 70619..70678 | - | 60 | NuclAT_2 | - | Antitoxin Detail |
| NBY13_RS24100 (70723) | 70723..70857 | + | 135 | WP_023144756.1 | Hok/Gef family protein | Toxin Detail |
| NBY13_RS24105 (71154) | 71154..71408 | + | 255 | WP_000083850.1 | replication regulatory protein RepA | - |
| NBY13_RS24115 (71644) | 71644..71718 | + | 75 | WP_031943482.1 | RepA leader peptide Tap | - |
| NBY13_RS24120 (71711) | 71711..72568 | + | 858 | WP_001617855.1 | incFII family plasmid replication initiator RepA | - |
| NBY13_RS24125 (73504) | 73504..73656 | + | 153 | WP_171004014.1 | hypothetical protein | - |
| NBY13_RS24130 (73704) | 73704..73949 | - | 246 | WP_250838133.1 | hypothetical protein | - |
| NBY13_RS24135 (73966) | 73966..74154 | + | 189 | WP_231550408.1 | CPBP family glutamic-type intramembrane protease | - |
| NBY13_RS24140 (74247) | 74247..74500 | + | 254 | Protein_87 | type II toxin-antitoxin system antitoxin PemI | - |
| NBY13_RS24145 (74469) | 74469..74831 | + | 363 | Protein_88 | type II toxin-antitoxin system toxin endoribonuclease PemK | - |
| NBY13_RS24150 (75222) | 75222..75488 | + | 267 | WP_250838134.1 | DUF262 domain-containing protein | - |
| NBY13_RS24155 (75685) | 75685..76422 | + | 738 | WP_224271570.1 | hypothetical protein | - |
| NBY13_RS24160 (76451) | 76451..76549 | + | 99 | Protein_91 | IS1 family transposase | - |
| NBY13_RS24165 (76699) | 76699..77559 | - | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| NBY13_RS24170 (77691) | 77691..78395 | + | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| NBY13_RS24175 (78454) | 78454..78813 | - | 360 | Protein_94 | type IV conjugative transfer system protein TraE | - |
| NBY13_RS24180 (78835) | 78835..79146 | - | 312 | WP_000012107.1 | type IV conjugative transfer system protein TraL | - |
| NBY13_RS24185 (79151) | 79151..79513 | - | 363 | WP_000338606.1 | type IV conjugative transfer system pilin TraA | - |
| NBY13_RS24190 (79547) | 79547..79774 | - | 228 | WP_001254388.1 | conjugal transfer relaxosome protein TraY | - |
| NBY13_RS24195 (79862) | 79862..80539 | - | 678 | WP_001348626.1 | PAS domain-containing protein | - |
| NBY13_RS24200 (80673) | 80673..81056 | - | 384 | WP_001151566.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| NBY13_RS24205 (81399) | 81399..81989 | + | 591 | WP_001376243.1 | hypothetical protein | VF |
| NBY13_RS24210 (82286) | 82286..83107 | - | 822 | WP_001234469.1 | DUF932 domain-containing protein | - |
| NBY13_RS24215 (83226) | 83226..83513 | - | 288 | WP_000107535.1 | hypothetical protein | - |
| NBY13_RS24220 (83538) | 83538..83744 | - | 207 | WP_000275859.1 | hypothetical protein | - |
| NBY13_RS24225 (83814) | 83814..83987 | + | 174 | Protein_104 | hypothetical protein | - |
| NBY13_RS24230 (83985) | 83985..84215 | - | 231 | WP_001426396.1 | hypothetical protein | - |
| NBY13_RS24235 (84435) | 84435..84560 | - | 126 | WP_001372321.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| NBY13_RS24240 (84502) | 84502..84651 | - | 150 | Protein_107 | plasmid maintenance protein Mok | - |
| - (84637) | 84637..84677 | - | 41 | NuclAT_1 | - | Antitoxin Detail |
| - (84637) | 84637..84677 | - | 41 | NuclAT_1 | - | Antitoxin Detail |
| - (84637) | 84637..84677 | - | 41 | NuclAT_1 | - | Antitoxin Detail |
| - (84637) | 84637..84677 | - | 41 | NuclAT_1 | - | Antitoxin Detail |
| - (86121) | 86121..86307 | - | 187 | NuclAT_0 | - | - |
| - (86121) | 86121..86307 | - | 187 | NuclAT_0 | - | - |
| - (86121) | 86121..86307 | - | 187 | NuclAT_0 | - | - |
| - (86121) | 86121..86307 | - | 187 | NuclAT_0 | - | - |
| NBY13_RS24250 (86276) | 86276..87038 | - | 763 | Protein_109 | plasmid SOS inhibition protein A | - |
| NBY13_RS24255 (87035) | 87035..87469 | - | 435 | WP_000845940.1 | conjugation system SOS inhibitor PsiB | - |
| NBY13_RS24260 (87524) | 87524..89482 | - | 1959 | WP_000117179.1 | ParB/RepB/Spo0J family partition protein | - |
| NBY13_RS24265 (89548) | 89548..89781 | - | 234 | WP_000005990.1 | DUF905 family protein | - |
| NBY13_RS24270 (89844) | 89844..90383 | - | 540 | WP_000290841.1 | single-stranded DNA-binding protein | - |
| NBY13_RS24275 (90409) | 90409..90615 | - | 207 | WP_000547975.1 | hypothetical protein | - |
| NBY13_RS24280 (90856) | 90856..91107 | - | 252 | WP_071579736.1 | hypothetical protein | - |
| NBY13_RS24285 (91026) | 91026..91232 | - | 207 | WP_001774176.1 | hypothetical protein | - |
| NBY13_RS24290 (91258) | 91258..91821 | - | 564 | WP_250838135.1 | class I SAM-dependent methyltransferase | - |
| NBY13_RS24295 (91869) | 91869..92132 | - | 264 | Protein_118 | hydrolase | - |
| NBY13_RS24300 (92186) | 92186..92890 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| NBY13_RS24305 (92955) | 92955..93347 | + | 393 | Protein_120 | tunicamycin resistance protein | - |
| NBY13_RS24310 (93945) | 93945..94649 | - | 705 | WP_001067858.1 | IS6 family transposase IS15DI | Transposase |
| NBY13_RS24315 (94714) | 94714..95214 | + | 501 | Protein_122 | hypothetical protein | - |
| NBY13_RS24320 (95373) | 95373..95531 | - | 159 | WP_228955855.1 | abortive infection family protein | - |
| NBY13_RS24325 (95679) | 95679..96376 | + | 698 | WP_223293341.1 | IS1 family transposase IS1R | Transposase |
| NBY13_RS24330 (96392) | 96392..96721 | + | 330 | Protein_125 | TOBE domain-containing protein | - |
| NBY13_RS24335 (96830) | 96830..97762 | - | 933 | WP_000081352.1 | homocysteine S-methyltransferase | - |
| NBY13_RS24340 (97749) | 97749..99152 | - | 1404 | WP_001373486.1 | S-methylmethionine permease | - |
| NBY13_RS24345 (99396) | 99396..100376 | + | 981 | WP_000019407.1 | IS5 family transposase IS5D | Transposase |
| NBY13_RS24350 (100586) | 100586..100921 | + | 336 | WP_169329198.1 | type I deoxyribonuclease HsdR | - |
| NBY13_RS24355 (100871) | 100871..101284 | - | 414 | Protein_130 | integrase core domain-containing protein | - |
| NBY13_RS24360 (101289) | 101289..101567 | - | 279 | Protein_131 | pdcB | - |
| NBY13_RS24365 (101595) | 101595..101774 | - | 180 | WP_001513661.1 | hypothetical protein | - |
| NBY13_RS24370 (101779) | 101779..102159 | - | 381 | WP_001216034.1 | type II toxin-antitoxin system death-on-curing family toxin | - |
| NBY13_RS24375 (102159) | 102159..102380 | - | 222 | WP_001190712.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|