MGE detailed information
MGE type: Conjugative plasmid MGE length: 91188 bp
Accession: NZ_CP098191 Location: 1..91188 Organism: Escherichia coli strain Z0117EC0117 Replicon: plasmid pZ0117EC0117-4
Accession: NZ_CP098191 Location: 1..91188 Organism: Escherichia coli strain Z0117EC0117 Replicon: plasmid pZ0117EC0117-4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBY25_RS25240 (433) | 433..1704 | + | 1272 | WP_250782060.1 | Y-family DNA polymerase | - |
| NBY25_RS25245 (1908) | 1908..2534 | + | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| NBY25_RS25250 (2531) | 2531..2833 | + | 303 | WP_001245884.1 | hypothetical protein | - |
| NBY25_RS25830 (3360) | 3360..3611 | - | 252 | Protein_4 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| NBY25_RS25255 (3609) | 3609..5507 | - | 1899 | Protein_5 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| NBY25_RS25260 (5511) | 5511..6071 | - | 561 | WP_001161490.1 | Tn3 family transposase TnpR_TnAs1 | Transposase |
| NBY25_RS25265 (6381) | 6381..6917 | + | 537 | Protein_7 | PAS domain-containing protein | - |
| NBY25_RS25270 (6985) | 6985..8082 | - | 1098 | Protein_8 | TonB-dependent receptor | - |
| NBY25_RS25275 (8139) | 8139..9107 | - | 969 | WP_013362812.1 | IS5 family transposase IS903B | Transposase |
| NBY25_RS25280 (9142) | 9142..10017 | - | 876 | WP_001617865.1 | Beta-lactamase CTX-M-97 | ARG |
| NBY25_RS25285 (10267) | 10267..11529 | - | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| NBY25_RS25290 (11717) | 11717..12814 | - | 1098 | Protein_12 | protein YagA | - |
| NBY25_RS25295 (13167) | 13167..13769 | + | 603 | WP_032291854.1 | ProQ/FINO family protein | - |
| NBY25_RS25300 (13825) | 13825..14334 | + | 510 | WP_032291091.1 | hypothetical protein | - |
| NBY25_RS25305 (14650) | 14650..15498 | - | 849 | WP_032291092.1 | 3'-5' exonuclease | - |
| NBY25_RS25310 (15538) | 15538..15816 | - | 279 | WP_001384452.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| NBY25_RS25315 (15816) | 15816..16085 | - | 270 | WP_032291093.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| NBY25_RS25320 (16140) | 16140..16298 | - | 159 | WP_038349023.1 | hypothetical protein | - |
| NBY25_RS25325 (16996) | 16996..18027 | - | 1032 | WP_052991836.1 | plasmid replication initiator RepA | - |
| NBY25_RS25330 (18985) | 18985..19143 | + | 159 | Protein_20 | ash family protein | - |
| NBY25_RS25335 (19181) | 19181..19468 | + | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| NBY25_RS25340 (19910) | 19910..20443 | + | 534 | WP_001372168.1 | transcription termination/antitermination NusG family protein | - |
| NBY25_RS25345 (20697) | 20697..21380 | + | 684 | WP_001377964.1 | hypothetical protein | - |
| NBY25_RS25350 (21552) | 21552..21806 | + | 255 | WP_001492938.1 | PilI type IV pilus biogenesis protein | - |
| NBY25_RS25355 (22067) | 22067..22333 | + | 267 | WP_023143690.1 | hypothetical protein | - |
| NBY25_RS25360 (23010) | 23010..24077 | + | 1068 | WP_250782061.1 | hypothetical protein | VF |
| NBY25_RS25365 (24077) | 24077..24514 | + | 438 | WP_000539811.1 | hypothetical protein | VF |
| NBY25_RS25370 (24528) | 24528..26210 | + | 1683 | WP_000748143.1 | hypothetical protein | VF |
| NBY25_RS25375 (26203) | 26203..27498 | + | 1296 | WP_000752780.1 | type 4b pilus protein PilO2 | - |
| NBY25_RS25380 (27485) | 27485..27937 | + | 453 | WP_250782062.1 | hypothetical protein | VF |
| NBY25_RS25385 (27948) | 27948..29501 | + | 1554 | WP_063118132.1 | hypothetical protein | VF |
| NBY25_RS25390 (29514) | 29514..30599 | + | 1086 | WP_001208802.1 | hypothetical protein | VF |
| NBY25_RS25395 (30616) | 30616..31227 | + | 612 | WP_250782063.1 | hypothetical protein | VF |
| NBY25_RS25400 (31237) | 31237..31797 | + | 561 | WP_000014005.1 | hypothetical protein | VF |
| NBY25_RS25405 (31782) | 31782..32438 | + | 657 | WP_001193549.1 | hypothetical protein | VF |
| NBY25_RS25410 (32438) | 32438..33730 | + | 1293 | WP_001619585.1 | hypothetical protein | VF |
| NBY25_RS25415 (33727) | 33727..34134 | - | 408 | WP_250782064.1 | prepilin, shufflon protein A | - |
| NBY25_RS25420 (34133) | 34133..35287 | + | 1155 | WP_001139955.1 | site-specific integrase | - |
| NBY25_RS25425 (35438) | 35438..36262 | + | 825 | WP_023518851.1 | conjugal transfer protein TraE | - |
| NBY25_RS25430 (36348) | 36348..37550 | + | 1203 | WP_000976353.1 | conjugal transfer protein TraF | - |
| NBY25_RS25435 (37610) | 37610..38194 | + | 585 | WP_000977522.1 | histidine phosphatase family protein | - |
| NBY25_RS25440 (38589) | 38589..39047 | + | 459 | WP_001079808.1 | hypothetical protein | VF |
| NBY25_RS25445 (39044) | 39044..39862 | + | 819 | WP_000646097.1 | hypothetical protein | VF |
| NBY25_RS25450 (39859) | 39859..41007 | + | 1149 | WP_078207115.1 | putative protein YggR | VF |
| NBY25_RS25455 (41004) | 41004..41294 | + | 291 | WP_001314267.1 | hypothetical protein | - |
| NBY25_RS25460 (41309) | 41309..41860 | + | 552 | WP_000014586.1 | Phospholipase D | VF |
| NBY25_RS25465 (41950) | 41950..45714 | + | 3765 | WP_233109165.1 | DUF5710 domain-containing protein | - |
| NBY25_RS25470 (45732) | 45732..46079 | + | 348 | WP_001055900.1 | conjugal transfer protein | - |
| NBY25_RS25475 (46076) | 46076..46768 | + | 693 | WP_000138550.1 | DotI/IcmL family type IV secretion protein | - |
| NBY25_RS25480 (46779) | 46779..47762 | + | 984 | WP_001191880.1 | hypothetical protein | VF |
| NBY25_RS25485 (47765) | 47765..49054 | + | 1290 | WP_080060525.1 | conjugal transfer protein TraO | - |
| NBY25_RS25490 (49054) | 49054..49758 | + | 705 | WP_000801920.1 | IncI1-type conjugal transfer protein TraP | - |
| NBY25_RS25495 (49758) | 49758..50285 | + | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| NBY25_RS25500 (50336) | 50336..50740 | + | 405 | WP_025769131.1 | IncI1-type conjugal transfer protein TraR | - |
| NBY25_RS25505 (50804) | 50804..50992 | + | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| NBY25_RS25510 (50976) | 50976..51776 | + | 801 | WP_001164788.1 | IncI1-type conjugal transfer protein TraT | - |
| NBY25_RS25515 (51866) | 51866..54910 | + | 3045 | WP_001024783.1 | IncI1-type conjugal transfer protein TraU | - |
| NBY25_RS25520 (54910) | 54910..55524 | + | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| NBY25_RS25525 (55491) | 55491..56693 | + | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| NBY25_RS25530 (56722) | 56722..57306 | + | 585 | WP_001037982.1 | IncI1-type conjugal transfer protein TraX | - |
| NBY25_RS25535 (57403) | 57403..59571 | + | 2169 | WP_250782059.1 | DotA/TraY family protein | - |
| NBY25_RS25540 (59645) | 59645..60295 | + | 651 | WP_001178506.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| NBY25_RS25545 (60367) | 60367..60576 | - | 210 | WP_000062603.1 | HEAT repeat domain-containing protein | - |
| NBY25_RS25550 (60968) | 60968..61144 | + | 177 | WP_001054903.1 | hypothetical protein | - |
| NBY25_RS25835 (61209) | 61209..61304 | - | 96 | WP_000609148.1 | DinQ-like type I toxin DqlB | - |
| NBY25_RS25560 (61805) | 61805..62056 | + | 252 | WP_001291964.1 | hypothetical protein | - |
| NBY25_RS25565 (62128) | 62128..62280 | - | 153 | WP_001387489.1 | Hok/Gef family protein | Toxin Detail |
| - (62332) | 62332..62392 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (62332) | 62332..62392 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (62332) | 62332..62392 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| - (62332) | 62332..62392 | + | 61 | NuclAT_0 | - | Antitoxin Detail |
| NBY25_RS25570 (62907) | 62907..63686 | + | 780 | WP_275542888.1 | protein FinQ | - |
| - (63756) | 63756..63813 | + | 58 | NuclAT_1 | - | - |
| - (63756) | 63756..63813 | + | 58 | NuclAT_1 | - | - |
| - (63756) | 63756..63813 | + | 58 | NuclAT_1 | - | - |
| - (63756) | 63756..63813 | + | 58 | NuclAT_1 | - | - |
| NBY25_RS25575 (63993) | 63993..65201 | + | 1209 | WP_011264049.1 | IncI1-type conjugal transfer protein TrbA | - |
| NBY25_RS25580 (65220) | 65220..66290 | + | 1071 | WP_000151590.1 | IncI1-type conjugal transfer protein TrbB | - |
| NBY25_RS25585 (66283) | 66283..68574 | + | 2292 | WP_011264051.1 | F-type conjugative transfer protein TrbC | - |
| NBY25_RS25590 (68611) | 68611..71310 | - | 2700 | WP_011264053.1 | hypothetical protein | Relaxase |
| NBY25_RS25595 (71321) | 71321..71653 | - | 333 | WP_063119516.1 | IncI1-type relaxosome accessory protein NikA | - |
| NBY25_RS25600 (71887) | 71887..72222 | + | 336 | WP_000157082.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| NBY25_RS25605 (72308) | 72308..73156 | - | 849 | WP_012783929.1 | DUF4942 domain-containing protein | - |
| NBY25_RS25610 (73737) | 73737..73988 | + | 252 | WP_063117899.1 | hypothetical protein | - |
| NBY25_RS25615 (74019) | 74019..74942 | - | 924 | WP_063117900.1 | ISNCY family transposase ISSen7 | VF |
| NBY25_RS25620 (74939) | 74939..75328 | - | 390 | WP_000833767.1 | hypothetical protein | - |
| NBY25_RS25625 (75505) | 75505..75771 | - | 267 | WP_000804663.1 | hypothetical protein | - |
| NBY25_RS25630 (75863) | 75863..76297 | - | 435 | WP_000218857.1 | hypothetical protein | - |
| NBY25_RS25635 (77026) | 77026..77526 | - | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| NBY25_RS25640 (77988) | 77988..78584 | - | 597 | WP_000977995.1 | hypothetical protein | - |
| NBY25_RS25645 (78581) | 78581..79300 | - | 720 | WP_001276270.1 | plasmid SOS inhibition protein A | - |
| NBY25_RS25650 (79297) | 79297..79731 | - | 435 | WP_001579792.1 | conjugation system SOS inhibitor PsiB | - |
| NBY25_RS25655 (79784) | 79784..81742 | - | 1959 | WP_078207109.1 | ParB/RepB/Spo0J family partition protein | - |
| NBY25_RS25660 (81801) | 81801..82034 | - | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| NBY25_RS25665 (82092) | 82092..82619 | - | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| NBY25_RS25670 (83003) | 83003..83236 | - | 234 | WP_139288298.1 | hypothetical protein | - |
| NBY25_RS25675 (83389) | 83389..83580 | - | 192 | WP_001027495.1 | hypothetical protein | - |
| NBY25_RS25680 (83577) | 83577..83999 | - | 423 | WP_000271727.1 | DUF1380 family protein | - |
| NBY25_RS25685 (84046) | 84046..84471 | - | 426 | WP_001198928.1 | antirestriction protein | - |
| NBY25_RS25690 (84887) | 84887..85657 | - | 771 | WP_077132299.1 | hypothetical protein | - |
| NBY25_RS25695 (85702) | 85702..86220 | - | 519 | WP_223350510.1 | DUF1380 family protein | - |
| NBY25_RS25700 (86150) | 86150..86371 | - | 222 | WP_001104873.1 | hypothetical protein | - |
| NBY25_RS25705 (86372) | 86372..87055 | - | 684 | WP_000086127.1 | DNA methylase | - |
| NBY25_RS25710 (87131) | 87131..87442 | - | 312 | WP_033863049.1 | hypothetical protein | - |
| NBY25_RS25715 (87446) | 87446..87868 | - | 423 | WP_000774832.1 | plasmid partitioning/stability family protein | - |
| NBY25_RS25720 (87871) | 87871..88851 | - | 981 | WP_012783921.1 | plasmid segregation protein ParM | - |
| NBY25_RS25725 (89189) | 89189..89524 | + | 336 | WP_001340323.1 | hypothetical protein | - |
| NBY25_RS25730 (89529) | 89529..89615 | - | 87 | Protein_100 | hypothetical protein | - |
| NBY25_RS25735 (89619) | 89619..90521 | - | 903 | WP_001739825.1 | DUF1281 domain-containing protein | - |
| NBY25_RS25740 (90939) | 90939..91187 | + | 249 | WP_000618110.1 | DinI-like family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|